View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8511_low_27 (Length: 436)
Name: NF8511_low_27
Description: NF8511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8511_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 19 - 422
Target Start/End: Original strand, 2661962 - 2662365
Alignment:
| Q |
19 |
gtaatattgcaatttgatcataaggttgaggattacgcattgccggtgtaaaacttaattgcaccttcatccgatcagatttctctatgatgtcaatttg |
118 |
Q |
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| T |
2661962 |
gtaatattgcaatttgatcataaggttgaggattacgcattgccggtgtaaaacttaattgcaccttcatccgatcagatttctctatgatgtcaatttg |
2662061 |
T |
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| Q |
119 |
ttattacactataccggcaaacatttatatggtagaatttgattggatgattgttacactgtcagtgcatagttctcaaactctttgattatttcagata |
218 |
Q |
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| T |
2662062 |
ttattacactataccggcaaacatttatatggtagaatttgattggatgattgttacactgtcagtgcatagttctcaaactctttgattatttcagata |
2662161 |
T |
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| Q |
219 |
catgcgcattcattataatactcacatggcctaagagattcaacttgtgatcagggtgaaaaaatcctctgtttttcttgccactcaatagctctaaaag |
318 |
Q |
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| T |
2662162 |
catgcgcattcattataatactcacatggcctaagagattcaacttgtgatcagggtgaaaaaatcctctgtttttcttgccactcaacagctctaaaag |
2662261 |
T |
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| Q |
319 |
taaaactccaaagctataaacatcagatttgaaagagaaatgtccatccattgtgtactctggaggcatgtatccactgcaacaatttcagaacatagaa |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2662262 |
taaaactccaaagctataaacatcagatttgaaagagaaatgtccatccattgcgtactctggaggcatgtatccactgcaacaatttcagaacatagaa |
2662361 |
T |
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| Q |
419 |
taat |
422 |
Q |
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| T |
2662362 |
taat |
2662365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 400
Target Start/End: Complemental strand, 5829949 - 5829871
Alignment:
| Q |
322 |
aactccaaagctataaacatcagatttgaaagagaaatgtccatccattgtgtactctggaggcatgtatccactgcaa |
400 |
Q |
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| T |
5829949 |
aactccaaagctaaaaacatcagattttattgagaaaaacccatgcactgcatactctggaggcatatatccactgcaa |
5829871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 400
Target Start/End: Complemental strand, 5804192 - 5804115
Alignment:
| Q |
323 |
actccaaagctataaacatcagatttgaaagagaaatgtccatccattgtgtactctggaggcatgtatccactgcaa |
400 |
Q |
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||||| |||||| ||||||||||||| | ||||||| ||||| || || || ||||||||||| |||||||||||| |
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| T |
5804192 |
actccgaagctaaaaacatcagattttatagagaaagatccatgcactgcatattctggaggcatatatccactgcaa |
5804115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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