View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8511_low_28 (Length: 429)
Name: NF8511_low_28
Description: NF8511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8511_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 60 - 412
Target Start/End: Complemental strand, 42936579 - 42936227
Alignment:
| Q |
60 |
gggttgtggaagatagagtggaaaagagactatcataatagtgttctctattctctattttgatttaatgtcaaagataaacttggttatggtggggaag |
159 |
Q |
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| T |
42936579 |
gggttgtggaagatagagtggaaaagagactatcataatagtgttctctattctctattttgatttaatgtcaaagataaacttggttatggtggggaag |
42936480 |
T |
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| Q |
160 |
tttgtcacttctccatgctaaatgccaccatgtttatcacctacaaaccttaaacttcatcaaagaaaaactaaaaaccacagcttgataataccttagc |
259 |
Q |
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| T |
42936479 |
tttgtctcttctccatgctaaatgccaccatgtttatcacctacaaaccttaaacttcatcaaagaaaaactaaaaaccacaacttgataataccttagc |
42936380 |
T |
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| Q |
260 |
atctacatcatttttattcagcaaagatgatcggagtacatggatcaattgattaaatactctctcgataatgagagaaagacatgtaatgtacaatcgt |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42936379 |
atctacatcatttttattcagcaaagatgatcggagtacatggatcaattgattaaatactctctcgataatgagagaaagacatgtaatgtacaatcgt |
42936280 |
T |
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| Q |
360 |
ggagttgtggttcttcttggaccaaattttgttgccttatttagtgttaagac |
412 |
Q |
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| T |
42936279 |
ggagttgtggttcttcttggaccaaattttgttgccttatttagtgttaagac |
42936227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 38
Target Start/End: Complemental strand, 42936629 - 42936601
Alignment:
| Q |
10 |
ggtggtggaactggaatgctcacaacaac |
38 |
Q |
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| T |
42936629 |
ggtggtggaactggaatgctcacaacaac |
42936601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 188
Target Start/End: Complemental strand, 23621195 - 23621155
Alignment:
| Q |
148 |
atggtggggaagtttgtcacttctccatgctaaatgccacc |
188 |
Q |
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| T |
23621195 |
atggtggggaaatttatcacttctctatgctaaatgccacc |
23621155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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