View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8511_low_29 (Length: 426)
Name: NF8511_low_29
Description: NF8511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8511_low_29 |
 | |
|
| [»] scaffold0015 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 48356549 - 48356941
Alignment:
| Q |
1 |
aagatcaaagtcaagtcttcacctctccttctgccacctatgtcggtgtttatgacggtcatggtggtcctgaagcttctagatttgtcaacaaccgtct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48356549 |
aagatcaaagtcaagtcttcacctctccttctgccacctatgtcggtgtttatgacggtcatggtggtcctgaagcttctagatttgtcaacaaccgtct |
48356648 |
T |
|
| Q |
101 |
tttcccctatttacacagttagtatcttccattactcttaattattatt-------gtttcacaagtttggtgtggcattggaacaattaagtaataatc |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48356649 |
tttcccctatttacacagttagtatcttccattactcttaattattgtttatctgtgtttgacaagtttggtgtggcattggaacaattaagtaataatc |
48356748 |
T |
|
| Q |
194 |
aacacaattatatttcttgtgttttgtattaagatccatttatttcaagttatttatttgaattttttgaaatataattctgagttcgagttgctctgta |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
48356749 |
aacacaattatatttcttgtgttttgtattaagatccatttatttcaagtgattgatttgaattttttgaaatataattttgagttcgagttgctctgta |
48356848 |
T |
|
| Q |
294 |
cttgacaactctgacaccaacacctcttatcgaagtcgtgtctgagatgtatcgttgatattttctgtctattggttgattgtgatgcatagt |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48356849 |
cttgacaactctgacaccaacacctcttatcgaagtcgtgtctgagatgcatcgttgatattttctgtctattggttgattgtgatgcatagt |
48356941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 73551 - 73515
Alignment:
| Q |
45 |
ggtgtttatgacggtcatggtggtcctgaagcttcta |
81 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
73551 |
ggtgtttatgatggtcatggtggtcctgaagcttcta |
73515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University