View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8511_low_34 (Length: 394)

Name: NF8511_low_34
Description: NF8511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8511_low_34
NF8511_low_34
[»] chr7 (28 HSPs)
chr7 (62-325)||(44540952-44541216)
chr7 (98-249)||(42607081-42607233)
chr7 (105-250)||(6729405-6729551)
chr7 (98-239)||(6730064-6730205)
chr7 (97-214)||(40257579-40257696)
chr7 (104-201)||(40257747-40257844)
chr7 (98-213)||(42607746-42607860)
chr7 (112-229)||(7677726-7677843)
chr7 (98-140)||(40320416-40320458)
chr7 (104-144)||(24996685-24996725)
chr7 (98-153)||(29060732-29060787)
chr7 (264-319)||(36906124-36906179)
chr7 (98-144)||(24995852-24995898)
chr7 (98-144)||(36844612-36844658)
chr7 (98-228)||(36845121-36845250)
chr7 (95-144)||(35771261-35771310)
chr7 (98-218)||(32871068-32871188)
chr7 (97-144)||(40319605-40319652)
chr7 (111-189)||(27599224-27599302)
chr7 (112-169)||(668193-668250)
chr7 (112-169)||(17145636-17145693)
chr7 (111-144)||(27600097-27600130)
chr7 (112-169)||(37468982-37469039)
chr7 (112-169)||(38779540-38779597)
chr7 (112-144)||(37468924-37468956)
chr7 (112-144)||(38778868-38778900)
chr7 (98-146)||(40740660-40740708)
chr7 (112-144)||(41194527-41194559)
[»] chr8 (13 HSPs)
chr8 (98-250)||(35943734-35943887)
chr8 (98-239)||(35943076-35943218)
chr8 (97-144)||(37562294-37562341)
chr8 (105-144)||(42345401-42345440)
chr8 (98-144)||(42346107-42346153)
chr8 (112-229)||(5035193-5035310)
chr8 (97-154)||(35840522-35840579)
chr8 (105-140)||(7054097-7054132)
chr8 (98-169)||(27321599-27321670)
chr8 (112-214)||(34992195-34992298)
chr8 (97-208)||(35839721-35839832)
chr8 (112-169)||(37639725-37639782)
chr8 (112-144)||(41859324-41859356)
[»] chr1 (29 HSPs)
chr1 (98-239)||(45923037-45923179)
chr1 (104-239)||(45922238-45922375)
chr1 (98-230)||(6075974-6076106)
chr1 (98-154)||(2687719-2687775)
chr1 (96-144)||(30780986-30781034)
chr1 (100-164)||(2684853-2684917)
chr1 (100-144)||(30466184-30466228)
chr1 (112-203)||(49611502-49611594)
chr1 (98-177)||(47334199-47334278)
chr1 (105-202)||(11032163-11032260)
chr1 (97-170)||(49420083-49420156)
chr1 (105-144)||(29334221-29334260)
chr1 (105-144)||(43316364-43316403)
chr1 (98-153)||(48835090-48835145)
chr1 (98-153)||(50950888-50950943)
chr1 (114-200)||(9948833-9948919)
chr1 (98-140)||(34716424-34716466)
chr1 (98-144)||(38931314-38931360)
chr1 (112-169)||(16270221-16270278)
chr1 (112-169)||(23440842-23440899)
chr1 (112-177)||(48972414-48972479)
chr1 (112-164)||(1012561-1012613)
chr1 (104-144)||(4640534-4640574)
chr1 (104-144)||(4641764-4641804)
chr1 (98-189)||(28371660-28371751)
chr1 (97-145)||(46134618-46134666)
chr1 (98-226)||(49420876-49421003)
chr1 (115-214)||(50827022-50827121)
chr1 (112-144)||(51974451-51974483)
[»] chr6 (24 HSPs)
chr6 (98-202)||(25067794-25067898)
chr6 (104-199)||(25067141-25067236)
chr6 (98-144)||(29290123-29290169)
chr6 (112-169)||(3542828-3542885)
chr6 (104-141)||(16764931-16764968)
chr6 (98-167)||(25371169-25371238)
chr6 (97-146)||(25371991-25372040)
chr6 (98-146)||(8384018-8384066)
chr6 (98-169)||(34717242-34717313)
chr6 (123-203)||(930948-931030)
chr6 (98-132)||(28975340-28975374)
chr6 (112-169)||(3543040-3543097)
chr6 (112-189)||(7193352-7193429)
chr6 (112-169)||(22582456-22582513)
chr6 (112-169)||(22587287-22587344)
chr6 (112-169)||(33018393-33018450)
chr6 (112-169)||(33479710-33479767)
chr6 (112-169)||(33480605-33480662)
chr6 (98-138)||(9453857-9453897)
chr6 (128-203)||(10608262-10608338)
chr6 (98-154)||(16766007-16766063)
chr6 (112-144)||(24125986-24126018)
chr6 (104-144)||(34034174-34034214)
chr6 (104-144)||(34035046-34035086)
[»] chr3 (20 HSPs)
chr3 (98-214)||(49161740-49161856)
chr3 (98-167)||(33968181-33968250)
chr3 (98-167)||(45297549-45297618)
chr3 (105-144)||(43768033-43768072)
chr3 (98-144)||(43768761-43768807)
chr3 (112-169)||(36750414-36750471)
chr3 (112-169)||(41755513-41755570)
chr3 (97-168)||(21166134-21166205)
chr3 (105-145)||(44022088-44022128)
chr3 (98-153)||(33454866-33454921)
chr3 (98-153)||(33455774-33455829)
chr3 (98-153)||(44021286-44021340)
chr3 (98-144)||(31598796-31598842)
chr3 (112-229)||(36750059-36750177)
chr3 (102-144)||(45501296-45501338)
chr3 (98-140)||(49160987-49161029)
chr3 (98-144)||(51421677-51421723)
chr3 (112-189)||(19132769-19132846)
chr3 (98-189)||(11442112-11442203)
chr3 (98-134)||(53030910-53030946)
[»] chr5 (26 HSPs)
chr5 (98-228)||(42650757-42650886)
chr5 (103-169)||(4789525-4789591)
chr5 (112-229)||(33001946-33002063)
chr5 (98-177)||(6803948-6804027)
chr5 (98-177)||(35263278-35263357)
chr5 (105-144)||(1970516-1970555)
chr5 (98-140)||(9923388-9923430)
chr5 (105-153)||(4607129-4607177)
chr5 (97-168)||(5620847-5620918)
chr5 (98-154)||(17766563-17766619)
chr5 (104-144)||(26712390-26712430)
chr5 (104-144)||(26982128-26982168)
chr5 (104-164)||(35262458-35262518)
chr5 (98-169)||(6804891-6804962)
chr5 (97-132)||(12202160-12202195)
chr5 (105-144)||(32943524-32943563)
chr5 (104-229)||(42654843-42654967)
chr5 (98-191)||(4820454-4820548)
chr5 (98-144)||(6912116-6912162)
chr5 (98-144)||(12201377-12201423)
chr5 (112-169)||(8204134-8204191)
chr5 (112-169)||(15183994-15184051)
chr5 (112-169)||(33002793-33002850)
chr5 (99-139)||(21770479-21770519)
chr5 (98-154)||(36912246-36912301)
chr5 (112-144)||(39950418-39950450)
[»] chr2 (21 HSPs)
chr2 (98-228)||(6084871-6085000)
chr2 (102-228)||(23875244-23875369)
chr2 (99-166)||(15602800-15602867)
chr2 (98-164)||(34617653-34617719)
chr2 (98-144)||(6085703-6085749)
chr2 (98-144)||(20992021-20992067)
chr2 (98-144)||(23876065-23876111)
chr2 (98-144)||(36390957-36391003)
chr2 (96-140)||(10670948-10670992)
chr2 (100-144)||(36391674-36391718)
chr2 (103-175)||(41767880-41767952)
chr2 (105-144)||(7868143-7868182)
chr2 (97-144)||(8145385-8145432)
chr2 (105-144)||(20991294-20991333)
chr2 (98-144)||(2307075-2307121)
chr2 (112-214)||(4479634-4479736)
chr2 (112-169)||(14573275-14573332)
chr2 (112-169)||(21471031-21471088)
chr2 (97-154)||(41519917-41519974)
chr2 (105-138)||(44094825-44094858)
chr2 (112-144)||(21471956-21471988)
[»] scaffold0041 (1 HSPs)
scaffold0041 (112-229)||(27235-27352)
[»] chr4 (37 HSPs)
chr4 (98-164)||(38010830-38010896)
chr4 (111-191)||(34371475-34371555)
chr4 (98-189)||(23383310-23383401)
chr4 (98-177)||(25970106-25970184)
chr4 (98-144)||(39429939-39429985)
chr4 (98-144)||(41261122-41261168)
chr4 (105-144)||(55514356-55514395)
chr4 (98-203)||(11680276-11680382)
chr4 (98-203)||(11688555-11688661)
chr4 (98-144)||(33370877-33370923)
chr4 (123-203)||(25655581-25655662)
chr4 (111-144)||(30808634-30808667)
chr4 (107-144)||(47326791-47326828)
chr4 (107-144)||(47341587-47341624)
chr4 (105-169)||(36450735-36450799)
chr4 (105-144)||(23425209-23425248)
chr4 (105-144)||(39429232-39429271)
chr4 (105-144)||(39652061-39652100)
chr4 (98-144)||(232051-232097)
chr4 (105-203)||(32449324-32449422)
chr4 (98-144)||(34154794-34154840)
chr4 (103-169)||(36451404-36451470)
chr4 (98-144)||(41261892-41261938)
chr4 (112-169)||(11417701-11417758)
chr4 (112-169)||(11417914-11417971)
chr4 (98-139)||(20351318-20351359)
chr4 (112-169)||(26610359-26610416)
chr4 (112-169)||(26611260-26611317)
chr4 (112-229)||(39523188-39523305)
chr4 (123-203)||(46764277-46764358)
chr4 (112-203)||(12590145-12590237)
chr4 (97-168)||(19860329-19860400)
chr4 (112-144)||(29651334-29651366)
chr4 (104-144)||(36013954-36013994)
chr4 (112-144)||(36865719-36865751)
chr4 (104-140)||(39870271-39870307)
chr4 (112-144)||(47377600-47377632)
[»] scaffold0311 (1 HSPs)
scaffold0311 (112-169)||(137-194)
[»] scaffold0155 (1 HSPs)
scaffold0155 (128-202)||(17369-17444)
[»] scaffold0150 (1 HSPs)
scaffold0150 (105-140)||(14019-14054)
[»] scaffold2003 (1 HSPs)
scaffold2003 (108-140)||(537-569)


Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-128; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 62 - 325
Target Start/End: Original strand, 44540952 - 44541216
Alignment:
Q  62 atggttcacttcaagggactattacataattgcatcggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcatta 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||    
T  44540952 atggttcacttcaagggactattacataattgcatcggtgaggtttagcatgggaaaggagagttgtttcccaccatgaaaaaattgtttttattcatta 44541051  T
Q  162 gatcaaataagaaacacaatcttatcatggtctatcaacacttaattatttttcactttatcttccactacaattctcactccaccattctattcttcta 261  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  44541052 gatcaaataagaaacacaatcttatcatggcctatcaacacttaattatttttcactttatcttccactacaattctcactccaccattctattcttcca 44541151  T
Q  262 cgacaacacaccctccacaacccatctccct-tttgccctcaccacctcgttgcaccttctatat 325  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  44541152 cgacaacacatcctccacaacccatctccctctttgccctcaccacctcgttgcaccttctatat 44541216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 98 - 249
Target Start/End: Original strand, 42607081 - 42607233
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatc 197  Q
    |||| |||||||||||||||||| || |||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||| ||||||    
T  42607081 ggtggggtttagcatgggaaaggggaattgtttcccaccatgggaaagttgtttttgtccattagatcaaatgagaaacacaatcttatcatgatctatc 42607180  T
Q  198 aacacttaatta-tttttcactttatcttccactacaattctcactccaccat 249  Q
    ||||||| |||| ||||||||||||||||||||||| |||||| |||||||||    
T  42607181 aacacttgattattttttcactttatcttccactaccattctctctccaccat 42607233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 105 - 250
Target Start/End: Original strand, 6729405 - 6729551
Alignment:
Q  105 tttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatcaacactt 204  Q
    ||||||||||||||||||| |||||| |||| |||||||| || || |||| | || |||||||| |||||||||||||||||||||| |||||||||||    
T  6729405 tttagcatgggaaaggagaattgttttccactatgggaaagtttttcttgtcccttggatcaaatgagaaacacaatcttatcatggtttatcaacactt 6729504  T
Q  205 aatta-tttttcactttatcttccactacaattctcactccaccatt 250  Q
    ||||| ||||| |||||||||| || |||||||||| ||||||||||    
T  6729505 aattatttttttactttatctttcagtacaattctctctccaccatt 6729551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 98 - 239
Target Start/End: Complemental strand, 6730205 - 6730064
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatc 197  Q
    |||| ||||||||||||||||||  ||||||||||||||||||| || || ||||||| |||| |||||||| ||||||||||||||||||||||||||     
T  6730205 ggtggggtttagcatgggaaagggaagttgtttcccaccatggggaattt-tttttgtccattggatcaaatgagaaacacaatcttatcatggtctata 6730107  T
Q  198 aacacttaatta-tttttcactttatcttccactacaattctc 239  Q
    |||| || |||| ||||||||||| |||| |||| ||| ||||    
T  6730106 aacatttgattattttttcactttgtctttcactccaactctc 6730064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 97 - 214
Target Start/End: Original strand, 40257579 - 40257696
Alignment:
Q  97 cggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctat 196  Q
    ||||| ||||||| |||||||| ||||||||||| | ||||||| ||| || ||||||| ||||||||||||| ||||||||| |||||||||| |||||    
T  40257579 cggtggggtttagtatgggaaatgagagttgttttcgaccatggaaaagttatttttgtccattagatcaaatgagaaacacattcttatcatgatctat 40257678  T
Q  197 caacacttaattattttt 214  Q
    |||||||| |||||||||    
T  40257679 caacacttgattattttt 40257696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 104 - 201
Target Start/End: Complemental strand, 40257844 - 40257747
Alignment:
Q  104 gtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatcaaca 201  Q
    ||||||||||||||| | |||||||||||||||||| |||| |||||||||| ||||||||||||| ||||||||| |||||||||| ||||||||||    
T  40257844 gtttagcatgggaaatgggagttgtttcccaccatgagaaagttgtttttgtccattagatcaaatgagaaacacattcttatcatgatctatcaaca 40257747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 98 - 213
Target Start/End: Complemental strand, 42607860 - 42607746
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatc 197  Q
    |||| |||||||||||| ||||| || |||||||||| ||| ||||| || ||||||| |||| |||||||| |||||||||||||||||||  ||||||    
T  42607860 ggtggggtttagcatggaaaaggggaattgtttcccatcataggaaagttatttttgtccatt-gatcaaatgagaaacacaatcttatcataatctatc 42607762  T
Q  198 aacacttaattatttt 213  Q
    ||||||| ||||||||    
T  42607761 aacacttgattatttt 42607746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 112 - 229
Target Start/End: Complemental strand, 7677843 - 7677726
Alignment:
Q  112 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatcaacacttaattatt 211  Q
    ||||||||||||||| ||||||||||||||||| ||| |  |||||||||||| |||| || |||||| |||||||||  ||| |||||||| |||||||    
T  7677843 tgggaaaggagagttctttcccaccatgggaaagttgatcatgttcattagattaaatgaggaacacattcttatcatattctctcaacactaaattatt 7677744  T
Q  212 tttcactttatcttccac 229  Q
    ||| ||  ||||||||||    
T  7677743 ttttacaatatcttccac 7677726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 40320458 - 40320416
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgg 140  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  40320458 ggtggggtttagcatgggaaaggagagttgtttcccaccatgg 40320416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 24996725 - 24996685
Alignment:
Q  104 gtttagcatgggaaaggagagttgtttcccaccatgggaaa 144  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  24996725 gtttagcatgggaaaggggagttgtttcccaccatgggaaa 24996685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 98 - 153
Target Start/End: Complemental strand, 29060787 - 29060732
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgttttt 153  Q
    |||| |||||||||||||||||| || |||||||||||||||||||| || |||||    
T  29060787 ggtggggtttagcatgggaaaggggaattgtttcccaccatgggaaagtttttttt 29060732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 264 - 319
Target Start/End: Complemental strand, 36906179 - 36906124
Alignment:
Q  264 acaacacaccctccacaacccatctcccttttgccctcaccacctcgttgcacctt 319  Q
    ||||||||||||||||||||||||||||| ||  || ||||||||| |||||||||    
T  36906179 acaacacaccctccacaacccatctccctctttaccccaccacctcattgcacctt 36906124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 24995852 - 24995898
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaa 144  Q
    |||| ||||||| |||||||||| |||||||||||||||||||||||    
T  24995852 ggtggggtttagaatgggaaaggggagttgtttcccaccatgggaaa 24995898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 36844612 - 36844658
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaa 144  Q
    |||| |||||||||||||||||| |||||||||||||||||| ||||    
T  36844612 ggtggggtttagcatgggaaaggtgagttgtttcccaccatgagaaa 36844658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 228
Target Start/End: Complemental strand, 36845250 - 36845121
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatc 197  Q
    ||||||||||||||||||||||| || ||||||| || ||||| ||| || ||| ||  |||||||| |  |||| |||| ||| ||||||| |||  ||    
T  36845250 ggtgaggtttagcatgggaaaggggaattgtttctcatcatggaaaagttttttatgaccattagattatgtaaggaacataatattatcatagtccctc 36845151  T
Q  198 aacacttaattatttttcactttatcttcca 228  Q
    ||||||  ||||||||| || ||||||||||    
T  36845150 aacactagattattttt-acattatcttcca 36845121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 95 - 144
Target Start/End: Complemental strand, 35771310 - 35771261
Alignment:
Q  95 atcggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaa 144  Q
    ||||||| ||||||| ||||||||| | ||||||||||||||||||||||    
T  35771310 atcggtggggtttagtatgggaaagcaaagttgtttcccaccatgggaaa 35771261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 218
Target Start/End: Complemental strand, 32871188 - 32871068
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatc 197  Q
    |||| ||||||||||||||| || ||||||||||||||||| ||||| || |||| |  |||| |||||  |||  |||| ||| ||||||| |||| ||    
T  32871188 ggtggggtttagcatgggaatggggagttgtttcccaccataggaaagtttttttggaccatttgatcatgtaaagaacataatattatcatagtctctc 32871089  T
Q  198 aacacttaattatttttcact 218  Q
    || |||  |||||||| ||||    
T  32871088 aatactatattattttacact 32871068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 97 - 144
Target Start/End: Original strand, 40319605 - 40319652
Alignment:
Q  97 cggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaa 144  Q
    ||||| ||||||| ||||||| |||||||| |||||||||||||||||    
T  40319605 cggtggggtttagtatgggaatggagagttatttcccaccatgggaaa 40319652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 189
Target Start/End: Original strand, 27599224 - 27599302
Alignment:
Q  111 atgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcat 189  Q
    |||||||||| ||||||||||||||||||||||| ||   ||||  |||||||| || |||  |||||| |||||||||    
T  27599224 atgggaaaggggagttgtttcccaccatgggaaagttaaatttgaccattagattaagtaatgaacacattcttatcat 27599302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 668193 - 668250
Alignment:
Q  112 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 169  Q
    ||||||||||||||| ||||||||||||||||| ||| |  ||| |||||||| ||||    
T  668193 tgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaat 668250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 17145636 - 17145693
Alignment:
Q  112 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 169  Q
    ||||||||||||||| ||||||||||||||||| ||| |  ||| |||||||| ||||    
T  17145636 tgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaat 17145693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 144
Target Start/End: Complemental strand, 27600130 - 27600097
Alignment:
Q  111 atgggaaaggagagttgtttcccaccatgggaaa 144  Q
    |||||||||| |||||||||||||||||||||||    
T  27600130 atgggaaaggggagttgtttcccaccatgggaaa 27600097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 37469039 - 37468982
Alignment:
Q  112 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 169  Q
    ||||||||||||||| ||||||||||||||||| ||| |  ||| |||||||| ||||    
T  37469039 tgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaat 37468982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 38779597 - 38779540
Alignment:
Q  112 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 169  Q
    ||||||||||||||| ||||||||||||||||| ||| |  ||| |||||||| ||||    
T  38779597 tgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaat 38779540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 144
Target Start/End: Original strand, 37468924 - 37468956
Alignment:
Q  112 tgggaaaggagagttgtttcccaccatgggaaa 144  Q
    ||||||||||||||| |||||||||||||||||    
T  37468924 tgggaaaggagagttctttcccaccatgggaaa 37468956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 144
Target Start/End: Original strand, 38778868 - 38778900
Alignment:
Q  112 tgggaaaggagagttgtttcccaccatgggaaa 144  Q
    ||||||||||||||| |||||||||||||||||    
T  38778868 tgggaaaggagagttctttcccaccatgggaaa 38778900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 40740660 - 40740708
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaat 146  Q
    ||||| |||||||||||||||||| | ||||||||||  ||||||||||    
T  40740660 ggtgatgtttagcatgggaaaggaaaattgtttcccatgatgggaaaat 40740708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 144
Target Start/End: Original strand, 41194527 - 41194559
Alignment:
Q  112 tgggaaaggagagttgtttcccaccatgggaaa 144  Q
    ||||||||||||||| |||||||||||||||||    
T  41194527 tgggaaaggagagttctttcccaccatgggaaa 41194559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 5e-41; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 98 - 250
Target Start/End: Complemental strand, 35943887 - 35943734
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatc 197  Q
    |||| ||||||||||||||||||||| ||||||||||| |||| ||| || || |||| | || |||||||| |||||||||||||||||||||| ||||    
T  35943887 ggtggggtttagcatgggaaaggagaattgtttcccactatggaaaagtttttcttgtcccttggatcaaatgagaaacacaatcttatcatggtttatc 35943788  T
Q  198 aacacttaattat-ttttcactttatcttccactacaattctcactccaccatt 250  Q
    ||||||||||||| |||| |||||||||| ||||||||||||| ||||||||||    
T  35943787 aacacttaattatttttttactttatctttcactacaattctctctccaccatt 35943734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 98 - 239
Target Start/End: Original strand, 35943076 - 35943218
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatc 197  Q
    |||| ||||||||||||||||||  ||||||||||||||||||| || || ||||||| ||||  ||||||| |||||||||||||||||||||||||||    
T  35943076 ggtggggtttagcatgggaaagggaagttgtttcccaccatggggaagttttttttgtccattgaatcaaatgagaaacacaatcttatcatggtctatc 35943175  T
Q  198 aacacttaatta-tttttcactttatcttccactacaattctc 239  Q
    ||||||| |||| ||||||||||| |||| |||| ||| ||||    
T  35943176 aacacttgattattttttcactttgtctttcactccaactctc 35943218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 97 - 144
Target Start/End: Original strand, 37562294 - 37562341
Alignment:
Q  97 cggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaa 144  Q
    ||||| ||||||||||||||||||||| |||||||||||||| |||||    
T  37562294 cggtggggtttagcatgggaaaggagaattgtttcccaccataggaaa 37562341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 105 - 144
Target Start/End: Original strand, 42345401 - 42345440
Alignment:
Q  105 tttagcatgggaaaggagagttgtttcccaccatgggaaa 144  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  42345401 tttagcatgggaatggagagttgtttcccaccatgggaaa 42345440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 42346153 - 42346107
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaa 144  Q
    |||| ||||||||||||||| |||||||||||||||| |||||||||    
T  42346153 ggtggggtttagcatgggaatggagagttgtttcccatcatgggaaa 42346107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 112 - 229
Target Start/End: Complemental strand, 5035310 - 5035193
Alignment:
Q  112 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatcaacacttaattatt 211  Q
    ||||||||||||||| ||| ||||||| ||||| ||| |  ||| |||||||| |||| || || ||| |||||||||  ||| |||||||| ||||||     
T  5035310 tgggaaaggagagttcttttccaccataggaaagttgatcatgtccattagattaaatgaggaatacattcttatcatactctctcaacactaaattatg 5035211  T
Q  212 tttcactttatcttccac 229  Q
    ||| ||  ||||||||||    
T  5035210 ttttacactatcttccac 5035193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 97 - 154
Target Start/End: Complemental strand, 35840579 - 35840522
Alignment:
Q  97 cggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttg 154  Q
    ||||| ||||||||||||||||||  ||||||||||||| |||||||| || ||||||    
T  35840579 cggtggggtttagcatgggaaagggaagttgtttcccacgatgggaaagttttttttg 35840522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 105 - 140
Target Start/End: Original strand, 7054097 - 7054132
Alignment:
Q  105 tttagcatgggaaaggagagttgtttcccaccatgg 140  Q
    ||||||||||||| ||||||||||||||||||||||    
T  7054097 tttagcatgggaatggagagttgtttcccaccatgg 7054132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 98 - 169
Target Start/End: Original strand, 27321599 - 27321670
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 169  Q
    |||| ||||||||||||||||  |||||||||||||||||||  ||| || || ||| ||||||||| ||||    
T  27321599 ggtggggtttagcatgggaaataagagttgtttcccaccatgaaaaagttattattgatcattagattaaat 27321670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 112 - 214
Target Start/End: Complemental strand, 34992298 - 34992195
Alignment:
Q  112 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatcaa-cacttaattat 210  Q
    ||||||||||||||| ||||||||||||||||| ||| |  ||| |||||||| |||| || |||| | || ||||||  ||| |||| |||| ||||||    
T  34992298 tgggaaaggagagttttttcccaccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaaccactaaattat 34992199  T
Q  211 tttt 214  Q
    ||||    
T  34992198 tttt 34992195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 97 - 208
Target Start/End: Original strand, 35839721 - 35839832
Alignment:
Q  97 cggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctat 196  Q
    ||||| ||||||||||||||||||  ||||||||||||  ||| |||| || ||||||   || |||| || |||| | |||| |||||||||| ||| |    
T  35839721 cggtggggtttagcatgggaaagggaagttgtttcccatgatgagaaagttttttttgactatcagattaagtaaggagcacactcttatcatgttctct 35839820  T
Q  197 caacacttaatt 208  Q
    ||||||| ||||    
T  35839821 caacactgaatt 35839832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 37639725 - 37639782
Alignment:
Q  112 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 169  Q
    ||||||||||||||| ||||||||||||||||| ||| |  | |||||||||| ||||    
T  37639725 tgggaaaggagagttctttcccaccatgggaaagttgatcatattcattagattaaat 37639782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 144
Target Start/End: Original strand, 41859324 - 41859356
Alignment:
Q  112 tgggaaaggagagttgtttcccaccatgggaaa 144  Q
    ||||||||||||||| |||||||||||||||||    
T  41859324 tgggaaaggagagttctttcccaccatgggaaa 41859356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 8e-37; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 98 - 239
Target Start/End: Complemental strand, 45923179 - 45923037
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatc 197  Q
    ||||||||||||||||||| |||  | |||||| ||||||||| ||| || ||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  45923179 ggtgaggtttagcatgggatagggaaattgttttccaccatggaaaagttttttttgtccattagatcaaacaagaaacacaatcttatcatggtctatc 45923080  T
Q  198 aacacttaatta-tttttcactttatcttccactacaattctc 239  Q
    ||||||| |||| |||||  ||||||||||||||||| |||||    
T  45923079 aacacttgattatttttttgctttatcttccactacatttctc 45923037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 104 - 239
Target Start/End: Original strand, 45922238 - 45922375
Alignment:
Q  104 gtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttc-attagatcaaataagaaacacaatcttatcatggtctatcaacac 202  Q
    ||||| |||||||||||   ||||||||||||||||||||| || |||||  || ||||||||||| |||||||||||||||||||||||||||||||||    
T  45922238 gtttaacatgggaaagggaggttgtttcccaccatgggaaagtttttttttgtctattagatcaaacaagaaacacaatcttatcatggtctatcaacac 45922337  T
Q  203 ttaatta-tttttcactttatcttccactacaattctc 239  Q
    || |||| ||||||| ||| ||||||||||||||||||    
T  45922338 ttgattattttttcaatttgtcttccactacaattctc 45922375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 98 - 230
Target Start/End: Original strand, 6075974 - 6076106
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatc 197  Q
    |||||||||||| |||||||||||||||| ||| | |||||| |||| ||| |  ||| |||||||| |||| || || ||| | ||||||| |||| ||    
T  6075974 ggtgaggtttagtatgggaaaggagagttcttttctaccatgagaaagttgatcatgtccattagattaaatgaggaatacatttttatcatagtctctc 6076073  T
Q  198 aacacttaattatttttcactttatcttccact 230  Q
    |||||| |||||||||| ||  |||||||||||    
T  6076074 aacactaaattattttttacactatcttccact 6076106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 98 - 154
Target Start/End: Complemental strand, 2687775 - 2687719
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttg 154  Q
    |||| ||||||||||||||||||| | ||||||||||||||||||||||| ||||||    
T  2687775 ggtggggtttagcatgggaaaggataattgtttcccaccatgggaaaattatttttg 2687719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 30781034 - 30780986
Alignment:
Q  96 tcggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaa 144  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  30781034 tcggtgaggtttaacatgggaaaggagagttgtttcccatcatgggaaa 30780986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 100 - 164
Target Start/End: Original strand, 2684853 - 2684917
Alignment:
Q  100 tgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagat 164  Q
    |||||||||||||||||||||| | |||||| ||| |||| |||| |||||||||| ||||||||    
T  2684853 tgaggtttagcatgggaaaggatatttgttttccatcatgagaaagttgtttttgtccattagat 2684917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 30466184 - 30466228
Alignment:
Q  100 tgaggtttagcatgggaaaggagagttgtttcccaccatgggaaa 144  Q
    |||||||||||||||||| || |||||||||||||||||||||||    
T  30466184 tgaggtttagcatgggaatggggagttgtttcccaccatgggaaa 30466228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 112 - 203
Target Start/End: Complemental strand, 49611594 - 49611502
Alignment:
Q  112 tgggaaaggagagttgtttcccaccatgggaaaatt-gtttttgttcattagatcaaataagaaacacaatcttatcatggtctatcaacact 203  Q
    |||||||||  |||| ||||||| |||||||||||| |||||||  |||||||| ||||| | |||||||| ||| |||||||| ||||||||    
T  49611594 tgggaaaggctagttttttcccatcatgggaaaattagtttttggccattagattaaatagggaacacaattttaccatggtctctcaacact 49611502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 98 - 177
Target Start/End: Original strand, 47334199 - 47334278
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaaca 177  Q
    |||| |||||||| ||| ||||| |||||||||||||| |||||||| ||| || ||| |||||||| |||| |||||||    
T  47334199 ggtggggtttagcctggaaaaggggagttgtttcccacaatgggaaagttgattatgtccattagattaaatgagaaaca 47334278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 105 - 202
Target Start/End: Complemental strand, 11032260 - 11032163
Alignment:
Q  105 tttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatcaacac 202  Q
    |||| ||||||||||| || | |||||||||||||||||| |||  ||||  |||||||| || |||  |||||| ||||||||||| || |||||||    
T  11032260 tttaacatgggaaaggggaatagtttcccaccatgggaaagttgaatttgaccattagattaagtaatgaacacattcttatcatggactctcaacac 11032163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 97 - 170
Target Start/End: Original strand, 49420083 - 49420156
Alignment:
Q  97 cggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaata 170  Q
    ||||||||||||| ||||||||||| ||||||||||||  ||||||||  | ||||||  |||||||| |||||    
T  49420083 cggtgaggtttagtatgggaaaggaaagttgtttcccatgatgggaaagctttttttgaccattagattaaata 49420156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 105 - 144
Target Start/End: Original strand, 29334221 - 29334260
Alignment:
Q  105 tttagcatgggaaaggagagttgtttcccaccatgggaaa 144  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  29334221 tttagcatgggaatggatagttgtttcccaccatgggaaa 29334260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 105 - 144
Target Start/End: Original strand, 43316364 - 43316403
Alignment:
Q  105 tttagcatgggaaaggagagttgtttcccaccatgggaaa 144  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  43316364 tttagcatgggaatggatagttgtttcccaccatgggaaa 43316403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 98 - 153
Target Start/End: Complemental strand, 48835145 - 48835090
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgttttt 153  Q
    |||| |||||||||||||||||| || |||||| ||||||||||||| || |||||    
T  48835145 ggtggggtttagcatgggaaaggggaattgttttccaccatgggaaagtttttttt 48835090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 98 - 153
Target Start/End: Complemental strand, 50950943 - 50950888
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgttttt 153  Q
    |||| ||||||||||||||| ||  |||||||||||||||| |||||||| |||||    
T  50950943 ggtggggtttagcatgggaatgggaagttgtttcccaccataggaaaattattttt 50950888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 200
Target Start/End: Complemental strand, 9948919 - 9948833
Alignment:
Q  114 ggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatcaac 200  Q
    ||||||||||||| ||||||||||||||||| ||| |  ||| |||||||| |||| || |||| | || ||||||  |||||||||    
T  9948919 ggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctatcaac 9948833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 140
Target Start/End: Original strand, 34716424 - 34716466
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgg 140  Q
    |||| ||||||||||||||| |||||||||||||||| |||||    
T  34716424 ggtggggtttagcatgggaatggagagttgtttcccatcatgg 34716466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 38931314 - 38931360
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaa 144  Q
    |||| ||||||||||| |||||| || ||||||||||||||||||||    
T  38931314 ggtggggtttagcatgagaaaggggaattgtttcccaccatgggaaa 38931360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 16270221 - 16270278
Alignment:
Q  112 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 169  Q
    ||||||||||||||| ||||||||||||||||| ||| |  ||| |||||||| ||||    
T  16270221 tgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaat 16270278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 23440899 - 23440842
Alignment:
Q  112 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 169  Q
    ||||||||||||||| ||||||||||||||||| ||| |  ||| |||||||| ||||    
T  23440899 tgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaat 23440842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 177
Target Start/End: Complemental strand, 48972479 - 48972414
Alignment:
Q  112 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaaca 177  Q
    ||||||||||||||| ||||||||||||| ||| ||| |  ||| |||||||| |||| |||||||    
T  48972479 tgggaaaggagagttctttcccaccatggaaaagttgatcatgtccattagattaaatgagaaaca 48972414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 164
Target Start/End: Original strand, 1012561 - 1012613
Alignment:
Q  112 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagat 164  Q
    |||||||||||| || ||||||||||||||||| || |||| | |||||||||    
T  1012561 tgggaaaggagatttttttcccaccatgggaaagtttttttggatcattagat 1012613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 4640534 - 4640574
Alignment:
Q  104 gtttagcatgggaaaggagagttgtttcccaccatgggaaa 144  Q
    ||||||||||| ||||| || ||||||||||||||||||||    
T  4640534 gtttagcatggtaaaggggaattgtttcccaccatgggaaa 4640574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 4641804 - 4641764
Alignment:
Q  104 gtttagcatgggaaaggagagttgtttcccaccatgggaaa 144  Q
    ||||||||||||||||| || ||||||||||||| ||||||    
T  4641804 gtttagcatgggaaaggggaattgtttcccaccaagggaaa 4641764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 189
Target Start/End: Complemental strand, 28371751 - 28371660
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaatt-gtttttgttcattagatcaaataagaaacacaatcttatcat 189  Q
    ||||||||||||||||||||||   | || ||||||||||||||||| || |||||||  ||||||||||||  | |||||||  ||||||||    
T  28371751 ggtgaggtttagcatgggaaagct-acttttttcccaccatgggaaagttagtttttgaccattagatcaaaccaaaaacacatccttatcat 28371660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 145
Target Start/End: Complemental strand, 46134666 - 46134618
Alignment:
Q  97 cggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaa 145  Q
    ||||| ||||||| ||||||||||  |||||||||||| ||||||||||    
T  46134666 cggtgtggtttagtatgggaaagggaagttgtttcccatcatgggaaaa 46134618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 226
Target Start/End: Complemental strand, 49421003 - 49420876
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatc 197  Q
    |||||||||||| ||||||||||  ||||||||||||  |||| ||| ||| ||||   |||| ||| ||||||| | |||  |||||||||| ||| ||    
T  49421003 ggtgaggtttagtatgggaaagggaagttgtttcccatgatggaaaagttgattttagccatttgattaaataaggagcaccctcttatcatgttctctc 49420904  T
Q  198 aacacttaattatttttcactttatcttc 226  Q
     ||||| |||| ||||||||  |||||||    
T  49420903 cacactgaatt-tttttcacactatcttc 49420876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 214
Target Start/End: Complemental strand, 50827121 - 50827022
Alignment:
Q  115 gaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatcaa-cacttaattatttt 213  Q
    |||||||||||| ||||||||||||||||| ||| |  ||| |||||||| |||| ||||||| | | |||||||  ||| |||| |||| |||||||||    
T  50827121 gaaaggagagtt-tttcccaccatgggaaagttgatcatgtccattagattaaatgagaaacatatttttatcatactctctcaaccactaaattatttt 50827023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 144
Target Start/End: Original strand, 51974451 - 51974483
Alignment:
Q  112 tgggaaaggagagttgtttcccaccatgggaaa 144  Q
    ||||||||||||||| |||||||||||||||||    
T  51974451 tgggaaaggagagttctttcccaccatgggaaa 51974483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 98 - 202
Target Start/End: Complemental strand, 25067898 - 25067794
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatc 197  Q
    |||| ||||||||||||||||||| | |||||||||||||| ||||| |||||||||| |||| |||||||||||||| |||||||||| || |||| ||    
T  25067898 ggtggggtttagcatgggaaaggatatttgtttcccaccataggaaagttgtttttgtccattggatcaaataagaaatacaatcttattatagtctctc 25067799  T
Q  198 aacac 202  Q
    |||||    
T  25067798 aacac 25067794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 104 - 199
Target Start/End: Original strand, 25067141 - 25067236
Alignment:
Q  104 gtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatcaa 199  Q
    ||||||||||||||| || | |||||| |||| |||||| | |||||||||| ||||||||||||| | |||||||| ||||| ||||||| ||||    
T  25067141 gtttagcatgggaaatgatacttgttttccactatgggagagttgtttttgtccattagatcaaatgaaaaacacaagcttattatggtctctcaa 25067236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 29290123 - 29290169
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaa 144  Q
    |||| |||||||||||| || ||||||||||||||||||||||||||    
T  29290123 ggtggggtttagcatggaaatggagagttgtttcccaccatgggaaa 29290169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 3542828 - 3542885
Alignment:
Q  112 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 169  Q
    ||||||||||||||| ||||||||||||||||| ||| |  |||||||||||| ||||    
T  3542828 tgggaaaggagagttttttcccaccatgggaaagttgatcatgttcattagattaaat 3542885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 104 - 141
Target Start/End: Original strand, 16764931 - 16764968
Alignment:
Q  104 gtttagcatgggaaaggagagttgtttcccaccatggg 141  Q
    |||||||||||||||||| |||||||||||||||||||    
T  16764931 gtttagcatgggaaaggaaagttgtttcccaccatggg 16764968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 98 - 167
Target Start/End: Original strand, 25371169 - 25371238
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaa 167  Q
    |||| |||||||||||||||||   | ||||||||||||||||||||||  ||||||  |||||||||||    
T  25371169 ggtggggtttagcatgggaaagtgaacttgtttcccaccatgggaaaatattttttgaccattagatcaa 25371238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 25372040 - 25371991
Alignment:
Q  97 cggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaat 146  Q
    |||||||||||||||||| |||||| | ||||||||||| ||||||||||    
T  25372040 cggtgaggtttagcatggaaaaggaaacttgtttcccacaatgggaaaat 25371991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 8384066 - 8384018
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaat 146  Q
    |||| |||||||||||||||||  ||||||||||||||||||| |||||    
T  8384066 ggtggggtttagcatgggaaagtggagttgtttcccaccatggaaaaat 8384018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 169
Target Start/End: Original strand, 34717242 - 34717313
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaatt-gtttttgttcattagatcaaat 169  Q
    ||||||||||||||||||||||   | || ||||||||||||||||| || ||||||| ||||||||||||||    
T  34717242 ggtgaggtttagcatgggaaagct-acttttttcccaccatgggaaagttagtttttgatcattagatcaaat 34717313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 123 - 203
Target Start/End: Original strand, 930948 - 931030
Alignment:
Q  123 agttgtttcccaccatgggaaaa--ttgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatcaacact 203  Q
    |||| ||||||||||||||||||  | |||||||  |||||||| ||||| | |||||||| |||| ||||||| ||||||||    
T  930948 agttttttcccaccatgggaaaagttagtttttgaccattagattaaatagggaacacaatgttattatggtctctcaacact 931030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 28975340 - 28975374
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcc 132  Q
    |||| ||||||||||||||||||||||||||||||    
T  28975340 ggtggggtttagcatgggaaaggagagttgtttcc 28975374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 3543097 - 3543040
Alignment:
Q  112 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 169  Q
    ||||||||||||||| ||||||||||||||||| ||| |  ||| |||||||| ||||    
T  3543097 tgggaaaggagagttttttcccaccatgggaaagttgatcatgtccattagattaaat 3543040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 189
Target Start/End: Original strand, 7193352 - 7193429
Alignment:
Q  112 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcat 189  Q
    ||||||||||||||| ||||||||||||||||| ||| |  | | |||||||| |||| || |||| | |||||||||    
T  7193352 tgggaaaggagagttctttcccaccatgggaaagttgatcatctccattagattaaatgaggaacatattcttatcat 7193429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 22582513 - 22582456
Alignment:
Q  112 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 169  Q
    ||||||||||||||| ||||||||||||||||| ||| |  ||| |||||||| ||||    
T  22582513 tgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaat 22582456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 22587344 - 22587287
Alignment:
Q  112 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 169  Q
    ||||||||||||||| ||||||||||||||||| ||| |  ||| |||||||| ||||    
T  22587344 tgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaat 22587287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 33018450 - 33018393
Alignment:
Q  112 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 169  Q
    ||||||||||||||| ||||||||||||||||| ||| |  ||| |||||||| ||||    
T  33018450 tgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaat 33018393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 33479710 - 33479767
Alignment:
Q  112 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 169  Q
    ||||||||||||||| ||||||||||||||||| ||| |  ||| |||||||| ||||    
T  33479710 tgggaaaggagagttatttcccaccatgggaaagttgatcatgtccattagattaaat 33479767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 33480662 - 33480605
Alignment:
Q  112 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 169  Q
    ||||||||||||||| ||||||||||||||||| ||| |  ||| |||||||| ||||    
T  33480662 tgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaat 33480605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 9453897 - 9453857
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccat 138  Q
    |||||||||||||||| ||||||| |||||||| |||||||    
T  9453897 ggtgaggtttagcatgagaaaggaaagttgttttccaccat 9453857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 203
Target Start/End: Complemental strand, 10608338 - 10608262
Alignment:
Q  128 tttcccaccatgggaaaatt-gtttttgttcattagatcaaataagaaacacaatcttatcatggtctatcaacact 203  Q
    ||||||||||||||||| || |||||||  |||||||| ||||| | |||||||| |||| ||||||| ||| ||||    
T  10608338 tttcccaccatgggaaagttagtttttgaccattagattaaatagggaacacaatgttattatggtctctcagcact 10608262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 154
Target Start/End: Complemental strand, 16766063 - 16766007
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttg 154  Q
    |||| ||||||||||||||||| | |||||||| ||||||||| ||| || ||||||    
T  16766063 ggtggggtttagcatgggaaagaaaagttgttttccaccatggaaaagttttttttg 16766007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 144
Target Start/End: Original strand, 24125986 - 24126018
Alignment:
Q  112 tgggaaaggagagttgtttcccaccatgggaaa 144  Q
    ||||||||| |||||||||||||||||||||||    
T  24125986 tgggaaaggggagttgtttcccaccatgggaaa 24126018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 34034174 - 34034214
Alignment:
Q  104 gtttagcatgggaaaggagagttgtttcccaccatgggaaa 144  Q
    ||||| |||||||||||||| ||| ||||||||||||||||    
T  34034174 gtttaacatgggaaaggagaattgcttcccaccatgggaaa 34034214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 34035086 - 34035046
Alignment:
Q  104 gtttagcatgggaaaggagagttgtttcccaccatgggaaa 144  Q
    ||||| |||||||||||||| |||||||||| |||||||||    
T  34035086 gtttaacatgggaaaggagaattgtttcccatcatgggaaa 34035046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 98 - 214
Target Start/End: Complemental strand, 49161856 - 49161740
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatc 197  Q
    ||||||||||||||||||||||| || |||||||||||||||||||| || ||| ||  ||||||||||  |||| |||| ||| ||||||| |||| ||    
T  49161856 ggtgaggtttagcatgggaaaggggaattgtttcccaccatgggaaagttttttatgagcattagatcatgtaaggaacataatattatcatagtctttc 49161757  T
Q  198 aacacttaattattttt 214  Q
    ||||||  |||||||||    
T  49161756 aacactagattattttt 49161740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 167
Target Start/End: Original strand, 33968181 - 33968250
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaa 167  Q
    |||| ||||||||||||||||||  | ||||||||||||||||||||||  ||||||  |||||||||||    
T  33968181 ggtggggtttagcatgggaaagggaacttgtttcccaccatgggaaaatattttttgaccattagatcaa 33968250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 167
Target Start/End: Original strand, 45297549 - 45297618
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaa 167  Q
    |||| ||||||| |||||||||||||||||||||||| ||||||||| || |||||   |||||||||||    
T  45297549 ggtggggtttagtatgggaaaggagagttgtttcccatcatgggaaagttttttttaaccattagatcaa 45297618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 105 - 144
Target Start/End: Original strand, 43768033 - 43768072
Alignment:
Q  105 tttagcatgggaaaggagagttgtttcccaccatgggaaa 144  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  43768033 tttagcatgggaatggagagttgtttcccaccatgggaaa 43768072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 43768807 - 43768761
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaa 144  Q
    |||| ||||||||||||||| |||||||||||| |||||||||||||    
T  43768807 ggtggggtttagcatgggaatggagagttgttttccaccatgggaaa 43768761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 36750471 - 36750414
Alignment:
Q  112 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 169  Q
    ||||||||||||||| ||||||||||||||||| ||| |  |||||||||||| ||||    
T  36750471 tgggaaaggagagttctttcccaccatgggaaagttgatcatgttcattagattaaat 36750414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 41755513 - 41755570
Alignment:
Q  112 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 169  Q
    ||||||||||||||| |||||||||||| |||||||| |  |||||||||||| ||||    
T  41755513 tgggaaaggagagttttttcccaccatgagaaaattgatcatgttcattagattaaat 41755570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 168
Target Start/End: Complemental strand, 21166205 - 21166134
Alignment:
Q  97 cggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaatt-gtttttgttcattagatcaaa 168  Q
    |||||||||||||||||||||||   | || |||||||||||||||||||| |||||||  ||||||||||||    
T  21166205 cggtgaggtttagcatgggaaagtt-acttttttcccaccatgggaaaattagtttttgaccattagatcaaa 21166134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 145
Target Start/End: Complemental strand, 44022128 - 44022088
Alignment:
Q  105 tttagcatgggaaaggagagttgtttcccaccatgggaaaa 145  Q
    |||||||||| ||||||||||||||| ||||||||||||||    
T  44022128 tttagcatggaaaaggagagttgttttccaccatgggaaaa 44022088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 98 - 153
Target Start/End: Original strand, 33454866 - 33454921
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgttttt 153  Q
    |||| ||||||||||||||||||| | ||||||||||||||| |||| || |||||    
T  33454866 ggtggggtttagcatgggaaaggaaaattgtttcccaccatgagaaagtttttttt 33454921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 98 - 153
Target Start/End: Complemental strand, 33455829 - 33455774
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgttttt 153  Q
    |||| |||||||||||||||||| || |||||||||||||| ||||| || |||||    
T  33455829 ggtggggtttagcatgggaaaggggaattgtttcccaccataggaaagtttttttt 33455774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 98 - 153
Target Start/End: Original strand, 44021286 - 44021340
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgttttt 153  Q
    |||| ||||||||||||||||| | |||||||||||||||||||||| || |||||    
T  44021286 ggtggggtttagcatgggaaagaa-agttgtttcccaccatgggaaagtttttttt 44021340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 31598842 - 31598796
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaa 144  Q
    ||||| ||||||||||| |||| | ||||||||||||||||||||||    
T  31598842 ggtgaagtttagcatggaaaagaaaagttgtttcccaccatgggaaa 31598796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 229
Target Start/End: Original strand, 36750059 - 36750177
Alignment:
Q  112 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatcaa-cacttaattat 210  Q
    ||||||||||||||| ||| ||||||||| ||| ||| |  |||||||||||| |||| || || ||| |||||||||  ||| |||| ||||  |||||    
T  36750059 tgggaaaggagagttcttttccaccatggaaaagttgatcatgttcattagattaaatgaggaatacattcttatcatactctctcaaccactagattat 36750158  T
Q  211 ttttcactttatcttccac 229  Q
    |||| ||  ||||||||||    
T  36750159 tttttacactatcttccac 36750177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 144
Target Start/End: Complemental strand, 45501338 - 45501296
Alignment:
Q  102 aggtttagcatgggaaaggagagttgtttcccaccatgggaaa 144  Q
    |||||||| |||||||||| ||||||||| |||||||||||||    
T  45501338 aggtttagtatgggaaaggggagttgttttccaccatgggaaa 45501296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 140
Target Start/End: Original strand, 49160987 - 49161029
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgg 140  Q
    |||| |||||||||||||||||| ||||||||||| |||||||    
T  49160987 ggtggggtttagcatgggaaaggggagttgtttcctaccatgg 49161029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 51421723 - 51421677
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaa 144  Q
    |||| ||||||||||| |||||| || ||||||||||||||||||||    
T  51421723 ggtggggtttagcatgagaaaggggaattgtttcccaccatgggaaa 51421677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 189
Target Start/End: Complemental strand, 19132846 - 19132769
Alignment:
Q  112 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcat 189  Q
    |||||||||| |||| ||||||||||||||||| ||| |  ||| |||||||| |||| || |||| | |||||||||    
T  19132846 tgggaaaggaaagttctttcccaccatgggaaagttgatcatgtccattagattaaatgaggaacatattcttatcat 19132769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 189
Target Start/End: Complemental strand, 11442203 - 11442112
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaatt-gtttttgttcattagatcaaataagaaacacaatcttatcat 189  Q
    ||||||||||||||||||||||   | || ||||||||||||||||| || |||||||  |||||||||||| ||  ||||||  ||||||||    
T  11442203 ggtgaggtttagcatgggaaagct-acttttttcccaccatgggaaagttagtttttgaccattagatcaaacaaagaacacatccttatcat 11442112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 134
Target Start/End: Original strand, 53030910 - 53030946
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttccca 134  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  53030910 ggtgaggtttagcatgagaaaggagaattgtttccca 53030946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 98 - 228
Target Start/End: Original strand, 42650757 - 42650886
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatc 197  Q
    ||||||||||||||||||||||| || ||||||  |||||||||||| || ||| ||  ||||||||||  |||| |||| ||| ||||||| |||| ||    
T  42650757 ggtgaggtttagcatgggaaaggggaattgtttttcaccatgggaaagttttttatgagcattagatcatgtaaggaacataatattatcatagtctttc 42650856  T
Q  198 aacacttaattatttttcactttatcttcca 228  Q
    ||||||  ||||||||| || ||||||||||    
T  42650857 aacactagattattttt-acattatcttcca 42650886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 169
Target Start/End: Original strand, 4789525 - 4789591
Alignment:
Q  103 ggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 169  Q
    |||||||||||||||||| ||||||||||||||||||||||| || || |||  |||||||||||||    
T  4789525 ggtttagcatgggaaaggggagttgtttcccaccatgggaaagttattcttgaccattagatcaaat 4789591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 112 - 229
Target Start/End: Original strand, 33001946 - 33002063
Alignment:
Q  112 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatcaacacttaattatt 211  Q
    ||||||||||||||| ||||||||||||| ||| ||| |  ||| |||||||| |||| || || ||| |||||||||  ||| |||||||| |||||||    
T  33001946 tgggaaaggagagttctttcccaccatggaaaagttgatcatgtccattagattaaatgaggaatacattcttatcatattctctcaacactaaattatt 33002045  T
Q  212 tttcactttatcttccac 229  Q
    ||| ||  ||||||||||    
T  33002046 ttttacactatcttccac 33002063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 177
Target Start/End: Original strand, 6803948 - 6804027
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaaca 177  Q
    |||| ||||||| ||||||||||  |||||||||| ||||| ||||| || ||||||| |||| ||||||||||||||||    
T  6803948 ggtggggtttagtatgggaaagggaagttgtttcctaccataggaaatttctttttgtccattggatcaaataagaaaca 6804027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 177
Target Start/End: Complemental strand, 35263357 - 35263278
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaaca 177  Q
    |||||||||||||||||||||||| |||||||| ||| ||||| ||| |||||||| | |||||||| || |||| ||||    
T  35263357 ggtgaggtttagcatgggaaaggatagttgttttccatcatggaaaagttgtttttatccattagattaagtaaggaaca 35263278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 105 - 144
Target Start/End: Complemental strand, 1970555 - 1970516
Alignment:
Q  105 tttagcatgggaaaggagagttgtttcccaccatgggaaa 144  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  1970555 tttagcatgggaatggagagttgtttcccaccatgggaaa 1970516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 140
Target Start/End: Original strand, 9923388 - 9923430
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgg 140  Q
    |||| ||||||||||||||| ||||||||||||||||||||||    
T  9923388 ggtggggtttagcatgggaatggagagttgtttcccaccatgg 9923430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 153
Target Start/End: Complemental strand, 4607177 - 4607129
Alignment:
Q  105 tttagcatgggaaaggagagttgtttcccaccatgggaaaattgttttt 153  Q
    ||||||||||||| ||||||||||||||||||||| |||| || |||||    
T  4607177 tttagcatgggaatggagagttgtttcccaccatgagaaagtttttttt 4607129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 168
Target Start/End: Complemental strand, 5620918 - 5620847
Alignment:
Q  97 cggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaatt-gtttttgttcattagatcaaa 168  Q
    |||||||||||||||||||||||   | || |||||||||||||||||||| |||||||  ||||||||||||    
T  5620918 cggtgaggtttagcatgggaaagtt-acttttttcccaccatgggaaaattagtttttgaccattagatcaaa 5620847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 17766563 - 17766619
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttg 154  Q
    |||||| ||||| ||||||||||| ||||||||||||||||| |||| || ||||||    
T  17766563 ggtgagatttagtatgggaaaggatagttgtttcccaccatgagaaagttttttttg 17766619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 26712430 - 26712390
Alignment:
Q  104 gtttagcatgggaaaggagagttgtttcccaccatgggaaa 144  Q
    |||||||||||||||||  ||||||||||||||||||||||    
T  26712430 gtttagcatgggaaagggaagttgtttcccaccatgggaaa 26712390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 26982168 - 26982128
Alignment:
Q  104 gtttagcatgggaaaggagagttgtttcccaccatgggaaa 144  Q
    |||||||||||||||||  ||||||||||||||||||||||    
T  26982168 gtttagcatgggaaagggaagttgtttcccaccatgggaaa 26982128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 164
Target Start/End: Original strand, 35262458 - 35262518
Alignment:
Q  104 gtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagat 164  Q
    |||||||||||||||||| | |||||||| ||||||||||| || ||||||  ||||||||    
T  35262458 gtttagcatgggaaaggataattgtttcctaccatgggaaagttatttttgaccattagat 35262518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 98 - 169
Target Start/End: Original strand, 6804891 - 6804962
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 169  Q
    |||| |||||||||||||||||  ||||||||||||||||||| ||| |  ||||||  ||| |||||||||    
T  6804891 ggtggggtttagcatgggaaagaggagttgtttcccaccatggaaaagtactttttgaccatcagatcaaat 6804962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 97 - 132
Target Start/End: Complemental strand, 12202195 - 12202160
Alignment:
Q  97 cggtgaggtttagcatgggaaaggagagttgtttcc 132  Q
    ||||||||||||||||||||||||| ||||||||||    
T  12202195 cggtgaggtttagcatgggaaaggaaagttgtttcc 12202160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 105 - 144
Target Start/End: Original strand, 32943524 - 32943563
Alignment:
Q  105 tttagcatgggaaaggagagttgtttcccaccatgggaaa 144  Q
    ||||||||||||||||| | ||||||||||||||||||||    
T  32943524 tttagcatgggaaaggatatttgtttcccaccatgggaaa 32943563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 104 - 229
Target Start/End: Original strand, 42654843 - 42654967
Alignment:
Q  104 gtttagcatgggaaaggagagttgtttcccaccatgggaaaatt-gtttttgttcattagatcaaataagaaacacaatcttatcatggtctatcaacac 202  Q
    |||||||||||||||||  |||| ||  ||||||||||||| || ||||||   |||| ||| || || | |||| ||| ||| |||||||| |||||||    
T  42654843 gtttagcatgggaaaggctagttttt--ccaccatgggaaagttagtttttaaccattggattaagtagggaacaaaattttaccatggtctctcaacac 42654940  T
Q  203 ttaattatttttcactttatcttccac 229  Q
    ||| || |||||||| |||||||||||    
T  42654941 ttatttttttttcacattatcttccac 42654967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 191
Target Start/End: Original strand, 4820454 - 4820548
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaa-attgtttttgttcattagatcaaataagaaacacaatcttatcatgg 191  Q
    |||| |||||| |||||||||||  | |||||| |||||||||||||  || ||||||| ||||||||  | ||||||||| ||| |||||||||    
T  4820454 ggtggggtttaacatgggaaagggaaattgttttccaccatgggaaattttttttttgtccattagattgagtaagaaacataattttatcatgg 4820548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 6912116 - 6912162
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaa 144  Q
    |||||| |||| |||||||| |||||||||||| |||||||||||||    
T  6912116 ggtgagatttaacatgggaatggagagttgttttccaccatgggaaa 6912162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 12201377 - 12201423
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaa 144  Q
    |||| ||||||| |||||||||||||||||||||| |||||| ||||    
T  12201377 ggtggggtttagtatgggaaaggagagttgtttcctaccatgagaaa 12201423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 8204134 - 8204191
Alignment:
Q  112 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 169  Q
    ||||||||||||||| ||||||||||||||||| ||| |  ||| |||||||| ||||    
T  8204134 tgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaat 8204191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 15184051 - 15183994
Alignment:
Q  112 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 169  Q
    ||||||||||||||| ||||||||||||||||| ||| |  ||| |||||||| ||||    
T  15184051 tgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaat 15183994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 33002850 - 33002793
Alignment:
Q  112 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 169  Q
    ||||||||||||||| ||||||||||||||||| ||| |  ||| |||||||| ||||    
T  33002850 tgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaat 33002793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 21770479 - 21770519
Alignment:
Q  99 gtgaggtttagcatgggaaaggagagttgtttcccaccatg 139  Q
    |||||||||||||||||||| |  |||||||||||||||||    
T  21770479 gtgaggtttagcatgggaaaagttagttgtttcccaccatg 21770519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 36912246 - 36912301
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttg 154  Q
    |||| ||||||||||||||||||  | || ||||||||||||||||| |||||||||    
T  36912246 ggtggggtttagcatgggaaaggctattt-tttcccaccatgggaaagttgtttttg 36912301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 144
Target Start/End: Original strand, 39950418 - 39950450
Alignment:
Q  112 tgggaaaggagagttgtttcccaccatgggaaa 144  Q
    ||||||||||||||| |||||||||||||||||    
T  39950418 tgggaaaggagagttctttcccaccatgggaaa 39950450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 98 - 228
Target Start/End: Original strand, 6084871 - 6085000
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatc 197  Q
    ||||||||||| ||||||||||| || |||||||||| ||||||||| || ||| ||  ||||| ||||  ||||||||| ||| ||||||| |||| ||    
T  6084871 ggtgaggtttaacatgggaaaggggaattgtttcccatcatgggaaagttttttatgaccattaaatcatgtaagaaacataatattatcatagtctttc 6084970  T
Q  198 aacacttaattatttttcactttatcttcca 228  Q
    ||||||  ||||||||| || ||||||||||    
T  6084971 aacactagattattttt-acattatcttcca 6085000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 228
Target Start/End: Original strand, 23875244 - 23875369
Alignment:
Q  102 aggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatcaaca 201  Q
    ||||||||||||||||||| || ||||||| || ||||||||| || ||| ||  ||||||||||  |||| |||| ||| ||||||| |||| ||||||    
T  23875244 aggtttagcatgggaaaggggaattgtttcgcatcatgggaaagttttttatgaccattagatcatgtaaggaacataatattatcatagtctttcaaca 23875343  T
Q  202 cttaattatttttcactttatcttcca 228  Q
    ||  ||||||||| || ||||||||||    
T  23875344 ctagattattttt-acattatcttcca 23875369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 99 - 166
Target Start/End: Complemental strand, 15602867 - 15602800
Alignment:
Q  99 gtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatca 166  Q
    |||||||||||||| |||||||  ||||||||||||||||||||||||  ||||||  ||||||||||    
T  15602867 gtgaggtttagcataggaaagggaagttgtttcccaccatgggaaaatattttttgaccattagatca 15602800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 98 - 164
Target Start/End: Original strand, 34617653 - 34617719
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagat 164  Q
    |||| ||||||||||||||||||| | |||||||||||||||||||| || ||||||  ||||||||    
T  34617653 ggtggggtttagcatgggaaaggataattgtttcccaccatgggaaagttatttttgaccattagat 34617719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 6085749 - 6085703
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaa 144  Q
    |||| |||||||||||||||||| ||||||||||| |||||||||||    
T  6085749 ggtggggtttagcatgggaaaggtgagttgtttcctaccatgggaaa 6085703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 20992067 - 20992021
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaa 144  Q
    |||| ||||||||||||||| |||||||||||| |||||||||||||    
T  20992067 ggtggggtttagcatgggaatggagagttgttttccaccatgggaaa 20992021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 23876111 - 23876065
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaa 144  Q
    |||| |||||||||||||||| | |||||||||||||||||||||||    
T  23876111 ggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaa 23876065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 36390957 - 36391003
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaa 144  Q
    |||| ||||||||||||||||||  ||||||||||||||||||||||    
T  36390957 ggtggggtttagcatgggaaagggaagttgtttcccaccatgggaaa 36391003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 140
Target Start/End: Complemental strand, 10670992 - 10670948
Alignment:
Q  96 tcggtgaggtttagcatgggaaaggagagttgtttcccaccatgg 140  Q
    |||||||||||||||||||||||||| ||||||||  ||||||||    
T  10670992 tcggtgaggtttagcatgggaaaggaaagttgtttttcaccatgg 10670948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 36391718 - 36391674
Alignment:
Q  100 tgaggtttagcatgggaaaggagagttgtttcccaccatgggaaa 144  Q
    |||||||||| |||||||||| ||||||||| |||||||||||||    
T  36391718 tgaggtttagtatgggaaaggggagttgttttccaccatgggaaa 36391674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 175
Target Start/End: Original strand, 41767880 - 41767952
Alignment:
Q  103 ggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaa 175  Q
    ||||||| |||||||| ||||  ||||||||||||| ||||| || ||||||| ||||  |||||||||||||    
T  41767880 ggtttagtatgggaaatgagaactgtttcccaccataggaaagttttttttgtccattgaatcaaataagaaa 41767952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 105 - 144
Target Start/End: Complemental strand, 7868182 - 7868143
Alignment:
Q  105 tttagcatgggaaaggagagttgtttcccaccatgggaaa 144  Q
    ||||||||| |||||| |||||||||||||||||||||||    
T  7868182 tttagcatgagaaaggggagttgtttcccaccatgggaaa 7868143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 97 - 144
Target Start/End: Original strand, 8145385 - 8145432
Alignment:
Q  97 cggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaa 144  Q
    ||||| ||||||| ||||||| | ||||||||||||||||||||||||    
T  8145385 cggtggggtttagaatgggaatgaagagttgtttcccaccatgggaaa 8145432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 105 - 144
Target Start/End: Original strand, 20991294 - 20991333
Alignment:
Q  105 tttagcatgggaaaggagagttgtttcccaccatgggaaa 144  Q
    ||||||||||||| |||||||||||| |||||||||||||    
T  20991294 tttagcatgggaatggagagttgttttccaccatgggaaa 20991333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 2307121 - 2307075
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaa 144  Q
    |||||||||||||||||||||||  |||||||| |||||||| ||||    
T  2307121 ggtgaggtttagcatgggaaagggaagttgttttccaccatgagaaa 2307075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 214
Target Start/End: Complemental strand, 4479736 - 4479634
Alignment:
Q  112 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatcaacacttaattatt 211  Q
    ||||||||||||||| |||| |||||||||||| ||  |  ||| |||||||| |||| || |||| | |||||||||  ||| || ||||| |||||||    
T  4479736 tgggaaaggagagttctttctcaccatgggaaagttaatcatgtccattagattaaatgaggaacatattcttatcatactctctccacactaaattatt 4479637  T
Q  212 ttt 214  Q
    |||    
T  4479636 ttt 4479634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 14573275 - 14573332
Alignment:
Q  112 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 169  Q
    ||||||||||||||| ||||||||||||||||| ||| |  ||| |||||||| ||||    
T  14573275 tgggaaaggagagttttttcccaccatgggaaagttgatcatgtccattagattaaat 14573332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 21471031 - 21471088
Alignment:
Q  112 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 169  Q
    ||||||||||||||| ||||||||||||||||| ||| |  ||| |||||||| ||||    
T  21471031 tgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaat 21471088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 154
Target Start/End: Complemental strand, 41519974 - 41519917
Alignment:
Q  97 cggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttg 154  Q
    |||||| |||||| ||||||||||  |||| ||||||||||||||||| || ||||||    
T  41519974 cggtgaagtttagtatgggaaagggaagttttttcccaccatgggaaagttttttttg 41519917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 138
Target Start/End: Complemental strand, 44094858 - 44094825
Alignment:
Q  105 tttagcatgggaaaggagagttgtttcccaccat 138  Q
    ||||||||||||||||| ||||||||||||||||    
T  44094858 tttagcatgggaaaggaaagttgtttcccaccat 44094825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 144
Target Start/End: Complemental strand, 21471988 - 21471956
Alignment:
Q  112 tgggaaaggagagttgtttcccaccatgggaaa 144  Q
    ||||||||||||||| |||||||||||||||||    
T  21471988 tgggaaaggagagttctttcccaccatgggaaa 21471956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 112 - 229
Target Start/End: Original strand, 27235 - 27352
Alignment:
Q  112 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatcaacacttaattatt 211  Q
    ||||||||||||||| ||||||| ||||||||| ||| |  ||| |||||||| |||| || |||||| |||||||||  ||| |||||||| |||||||    
T  27235 tgggaaaggagagttctttcccatcatgggaaagttgatcatgtccattagattaaatgaggaacacattcttatcatactctctcaacactaaattatt 27334  T
Q  212 tttcactttatcttccac 229  Q
    ||| ||  ||||||||||    
T  27335 ttttacactatcttccac 27352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 164
Target Start/End: Complemental strand, 38010896 - 38010830
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagat 164  Q
    |||||||||||||||||||||||| | |||||| ||| ||||||||| |||||||||| ||||||||    
T  38010896 ggtgaggtttagcatgggaaaggatatttgttttccatcatgggaaagttgtttttgtccattagat 38010830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 111 - 191
Target Start/End: Original strand, 34371475 - 34371555
Alignment:
Q  111 atgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatgg 191  Q
    |||||||||| || |||||||||||||||||||| || ||||||| ||||||||  | ||||||||| ||| |||||||||    
T  34371475 atgggaaaggggaattgtttcccaccatgggaaagttttttttgtccattagattgagtaagaaacataattttatcatgg 34371555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 189
Target Start/End: Original strand, 23383310 - 23383401
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcat 189  Q
    |||| ||||||| ||| |||||||||||||||||||||||||||||| ||  |||| | |||| |||||||| |  |||||| |||||||||    
T  23383310 ggtggggtttagaatgagaaaggagagttgtttcccaccatgggaaagttaattttatccattcgatcaaatgaagaacacactcttatcat 23383401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 177
Target Start/End: Original strand, 25970106 - 25970184
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaaca 177  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||| |||  | ||| |||||||| |||| |||||||    
T  25970106 ggtggggtttagcatgggaaaggggagttgtttcccaccatgggaaagttg-atatgtccattagattaaatgagaaaca 25970184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 39429985 - 39429939
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaa 144  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||    
T  39429985 ggtggggtttagcatgggaatggagagttgtttcccaccatgggaaa 39429939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 41261122 - 41261168
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaa 144  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||    
T  41261122 ggtgaggtttagcatgggaaaggaaagttgttttccaccatgggaaa 41261168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 105 - 144
Target Start/End: Complemental strand, 55514395 - 55514356
Alignment:
Q  105 tttagcatgggaaaggagagttgtttcccaccatgggaaa 144  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  55514395 tttagcatgggaaaggaaagttgtttcccaccatgggaaa 55514356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 203
Target Start/End: Original strand, 11680276 - 11680382
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaatt-gtttttgttcattagatcaaataagaaacacaatcttatcatggtctat 196  Q
    |||||||||||   |||||||||  |||| ||||||||||||||||| || |||||||  |||||||| ||||| | |||||||| |||| ||||||| |    
T  11680276 ggtgaggtttaatttgggaaaggttagttttttcccaccatgggaaagttagtttttgaccattagattaaatagggaacacaatgttattatggtctct 11680375  T
Q  197 caacact 203  Q
    || ||||    
T  11680376 cagcact 11680382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 203
Target Start/End: Original strand, 11688555 - 11688661
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaatt-gtttttgttcattagatcaaataagaaacacaatcttatcatggtctat 196  Q
    |||||||||||   |||||||||  |||| ||||||||||||||||| || |||||||  |||||||| ||||| | |||||||| |||| ||||||| |    
T  11688555 ggtgaggtttaatttgggaaaggttagttttttcccaccatgggaaagttagtttttgaccattagattaaatagggaacacaatgttattatggtctct 11688654  T
Q  197 caacact 203  Q
    || ||||    
T  11688655 cagcact 11688661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 33370923 - 33370877
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaa 144  Q
    |||| ||||||||||||||||||| | ||||||||||||||||||||    
T  33370923 ggtggggtttagcatgggaaaggatacttgtttcccaccatgggaaa 33370877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 123 - 203
Target Start/End: Complemental strand, 25655662 - 25655581
Alignment:
Q  123 agttgtttcccaccatgggaaaatt-gtttttgttcattagatcaaataagaaacacaatcttatcatggtctatcaacact 203  Q
    |||| ||||||||||||||||| || |||||||  |||||||| ||||| |||||||||| |||| ||||||| ||| ||||    
T  25655662 agttttttcccaccatgggaaagttagtttttgaccattagattaaataggaaacacaatgttattatggtctctcagcact 25655581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 111 - 144
Target Start/End: Original strand, 30808634 - 30808667
Alignment:
Q  111 atgggaaaggagagttgtttcccaccatgggaaa 144  Q
    ||||||||||||||||||||||||||||||||||    
T  30808634 atgggaaaggagagttgtttcccaccatgggaaa 30808667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 107 - 144
Target Start/End: Complemental strand, 47326828 - 47326791
Alignment:
Q  107 tagcatgggaaaggagagttgtttcccaccatgggaaa 144  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  47326828 tagcatgggaaaggaaagttgtttcccaccatgggaaa 47326791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 107 - 144
Target Start/End: Complemental strand, 47341624 - 47341587
Alignment:
Q  107 tagcatgggaaaggagagttgtttcccaccatgggaaa 144  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  47341624 tagcatgggaaaggaaagttgtttcccaccatgggaaa 47341587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 169
Target Start/End: Original strand, 36450735 - 36450799
Alignment:
Q  105 tttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 169  Q
    |||||||||||||||| ||||||||| ||||||||||||| ||| || ||| |||| ||| ||||    
T  36450735 tttagcatgggaaaggggagttgttttccaccatgggaaagttgattatgtccattggattaaat 36450799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 105 - 144
Target Start/End: Complemental strand, 23425248 - 23425209
Alignment:
Q  105 tttagcatgggaaaggagagttgtttcccaccatgggaaa 144  Q
    ||||| ||||||| ||||||||||||||||||||||||||    
T  23425248 tttagtatgggaatggagagttgtttcccaccatgggaaa 23425209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 105 - 144
Target Start/End: Original strand, 39429232 - 39429271
Alignment:
Q  105 tttagcatgggaaaggagagttgtttcccaccatgggaaa 144  Q
    ||||||||||||| |||||||||||||| |||||||||||    
T  39429232 tttagcatgggaatggagagttgtttcctaccatgggaaa 39429271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 105 - 144
Target Start/End: Complemental strand, 39652100 - 39652061
Alignment:
Q  105 tttagcatgggaaaggagagttgtttcccaccatgggaaa 144  Q
    ||||||||||||| ||||||||||||| ||||||||||||    
T  39652100 tttagcatgggaatggagagttgtttctcaccatgggaaa 39652061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 232097 - 232051
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaa 144  Q
    |||| ||||||| ||||||||||  ||||||||||||||||||||||    
T  232097 ggtggggtttagtatgggaaagggaagttgtttcccaccatgggaaa 232051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 203
Target Start/End: Original strand, 32449324 - 32449422
Alignment:
Q  105 tttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatcaacact 203  Q
    ||||| ||||||||||| | |||||||||||||||| |||||  ||||||   ||||||| ||| | |||   |||| ||||||||||||||| |||||    
T  32449324 tttagtatgggaaaggatacttgtttcccaccatggaaaaatattttttgacaattagattaaagaggaataccaattttatcatggtctatccacact 32449422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 34154794 - 34154840
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaa 144  Q
    |||| |||||||||||||||| || | ||||||||||||||||||||    
T  34154794 ggtggggtttagcatgggaaaagaaacttgtttcccaccatgggaaa 34154840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 169
Target Start/End: Complemental strand, 36451470 - 36451404
Alignment:
Q  103 ggtttagcatgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 169  Q
    |||||||||||||||||  |||||||||| |||||||| ||| ||| || ||| |||||||| ||||    
T  36451470 ggtttagcatgggaaagaggagttgtttctcaccatggaaaagttgattatgtccattagattaaat 36451404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 41261938 - 41261892
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaa 144  Q
    |||| ||||||| |||||||| ||||||||||||| |||||||||||    
T  41261938 ggtggggtttagtatgggaaatgagagttgtttcctaccatgggaaa 41261892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 11417701 - 11417758
Alignment:
Q  112 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 169  Q
    ||||||||||||||| ||||||||||||||||| ||| |  ||| |||||||| ||||    
T  11417701 tgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaat 11417758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 11417971 - 11417914
Alignment:
Q  112 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 169  Q
    ||||||||||||||| ||||||||||||||||| ||| |  ||| |||||||| ||||    
T  11417971 tgggaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaat 11417914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 139
Target Start/End: Complemental strand, 20351359 - 20351318
Alignment:
Q  98 ggtgaggtttagcatgggaaaggagagttgtttcccaccatg 139  Q
    |||| ||||||| ||||||| |||||||||||||||||||||    
T  20351359 ggtggggtttagtatgggaatggagagttgtttcccaccatg 20351318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 26610359 - 26610416
Alignment:
Q  112 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 169  Q
    ||||||| ||||||| ||||||||||||||||||||| |  ||| |||||||| ||||    
T  26610359 tgggaaatgagagttctttcccaccatgggaaaattgatcatgtccattagattaaat 26610416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 26611317 - 26611260
Alignment:
Q  112 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 169  Q
    ||||||||||||||| ||||||||||||||||| ||| |  ||| |||||||| ||||    
T  26611317 tgggaaaggagagttttttcccaccatgggaaagttgatcatgtccattagattaaat 26611260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 229
Target Start/End: Complemental strand, 39523305 - 39523188
Alignment:
Q  112 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaataagaaacacaatcttatcatggtctatcaacacttaattatt 211  Q
    ||||||||||||||| ||| ||||||||||||| ||| |  ||| |||||||| |||| || || |||   ||| |||  ||| |||||||| |||||||    
T  39523305 tgggaaaggagagttcttttccaccatgggaaagttgatcatgtccattagattaaatgaggaatacatctttaccatactctctcaacactaaattatt 39523206  T
Q  212 tttcactttatcttccac 229  Q
    ||| ||  ||||||||||    
T  39523205 ttttacactatcttccac 39523188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 203
Target Start/End: Original strand, 46764277 - 46764358
Alignment:
Q  123 agttgtttcccaccatgggaaaatt-gtttttgttcattagatcaaataagaaacacaatcttatcatggtctatcaacact 203  Q
    |||| ||||||||||||||||| || |||||||  ||||| || ||||| |||||||||| |||| ||||||| ||| ||||    
T  46764277 agttttttcccaccatgggaaagttagtttttgaccattaaattaaataggaaacacaatgttattatggtctctcagcact 46764358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 203
Target Start/End: Complemental strand, 12590237 - 12590145
Alignment:
Q  112 tgggaaaggagagttgtttcccaccatgggaaaatt-gtttttgttcattagatcaaataagaaacacaatcttatcatggtctatcaacact 203  Q
    |||||||||  |||| ||| ||||||||||||| || |||||||  |||||||| ||||| | |||||||| |||| ||||||| ||| ||||    
T  12590237 tgggaaaggctagtttttttccaccatgggaaagttagtttttgaccattagattaaatagggaacacaatgttattatggtctctcagcact 12590145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 168
Target Start/End: Original strand, 19860329 - 19860400
Alignment:
Q  97 cggtgaggtttagcatgggaaaggagagttgtttcccaccatgggaaaatt-gtttttgttcattagatcaaa 168  Q
    |||||||||||||||||||||||   | || ||||||||||||||||| || |||||||  ||||||||||||    
T  19860329 cggtgaggtttagcatgggaaagct-atttttttcccaccatgggaaagttagtttttgaccattagatcaaa 19860400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 144
Target Start/End: Complemental strand, 29651366 - 29651334
Alignment:
Q  112 tgggaaaggagagttgtttcccaccatgggaaa 144  Q
    ||||||||||||||| |||||||||||||||||    
T  29651366 tgggaaaggagagttctttcccaccatgggaaa 29651334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 36013994 - 36013954
Alignment:
Q  104 gtttagcatgggaaaggagagttgtttcccaccatgggaaa 144  Q
    ||||||||||||||| || |||||||| |||||||||||||    
T  36013994 gtttagcatgggaaatgaaagttgtttaccaccatgggaaa 36013954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 144
Target Start/End: Complemental strand, 36865751 - 36865719
Alignment:
Q  112 tgggaaaggagagttgtttcccaccatgggaaa 144  Q
    ||||||||||||||| |||||||||||||||||    
T  36865751 tgggaaaggagagttctttcccaccatgggaaa 36865719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 39870307 - 39870271
Alignment:
Q  104 gtttagcatgggaaaggagagttgtttcccaccatgg 140  Q
    |||||||||||||||| | ||||||||||||||||||    
T  39870307 gtttagcatgggaaagaaaagttgtttcccaccatgg 39870271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 144
Target Start/End: Complemental strand, 47377632 - 47377600
Alignment:
Q  112 tgggaaaggagagttgtttcccaccatgggaaa 144  Q
    ||||||||| |||||||||||||||||||||||    
T  47377632 tgggaaaggggagttgtttcccaccatgggaaa 47377600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 194 - 137
Alignment:
Q  112 tgggaaaggagagttgtttcccaccatgggaaaattgtttttgttcattagatcaaat 169  Q
    ||||||||||||||| ||||||||||||||||| ||| || |||||||||||| ||||    
T  194 tgggaaaggagagttctttcccaccatgggaaagttgattatgttcattagattaaat 137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 128 - 202
Target Start/End: Original strand, 17369 - 17444
Alignment:
Q  128 tttcccaccatgggaaaatt-gtttttgttcattagatcaaataagaaacacaatcttatcatggtctatcaacac 202  Q
    ||||||||||||||||| || ||||||   |||| ||||||||| | |||||||| |||||||||||| |||||||    
T  17369 tttcccaccatgggaaagttagtttttaaccatttgatcaaatagggaacacaattttatcatggtctttcaacac 17444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 105 - 140
Target Start/End: Original strand, 14019 - 14054
Alignment:
Q  105 tttagcatgggaaaggagagttgtttcccaccatgg 140  Q
    |||||||||||||||| |||||||||||||||||||    
T  14019 tttagcatgggaaaggggagttgtttcccaccatgg 14054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2003 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold2003
Description:

Target: scaffold2003; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 140
Target Start/End: Complemental strand, 569 - 537
Alignment:
Q  108 agcatgggaaaggagagttgtttcccaccatgg 140  Q
    ||||||||||||| |||||||||||||||||||    
T  569 agcatgggaaaggggagttgtttcccaccatgg 537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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