View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8511_low_35 (Length: 393)

Name: NF8511_low_35
Description: NF8511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8511_low_35
NF8511_low_35
[»] chr6 (4 HSPs)
chr6 (55-313)||(27854558-27854815)
chr6 (340-380)||(27854842-27854882)
chr6 (12-47)||(2286691-2286726)
chr6 (12-47)||(29483355-29483390)
[»] chr8 (1 HSPs)
chr8 (11-47)||(364956-364992)
[»] chr5 (6 HSPs)
chr5 (11-47)||(24593990-24594026)
chr5 (12-47)||(9777196-9777231)
chr5 (11-47)||(24668084-24668120)
chr5 (11-47)||(24736679-24736715)
chr5 (11-47)||(24737853-24737889)
chr5 (11-47)||(24750622-24750658)
[»] chr4 (5 HSPs)
chr4 (11-47)||(22724609-22724645)
chr4 (11-47)||(36038901-36038937)
chr4 (11-47)||(41403865-41403901)
chr4 (12-47)||(15535212-15535247)
chr4 (12-47)||(49546871-49546906)
[»] chr3 (9 HSPs)
chr3 (11-47)||(12306153-12306189)
chr3 (8-47)||(8373013-8373052)
chr3 (178-268)||(10378477-10378568)
chr3 (12-47)||(16801124-16801159)
chr3 (12-47)||(20247713-20247748)
chr3 (12-47)||(38310724-38310759)
chr3 (12-47)||(54521853-54521888)
chr3 (11-47)||(29543959-29543995)
chr3 (11-47)||(46722512-46722548)
[»] chr7 (4 HSPs)
chr7 (12-47)||(23664049-23664084)
chr7 (12-47)||(29797642-29797677)
chr7 (12-47)||(29801461-29801496)
chr7 (12-46)||(11304281-11304315)
[»] chr2 (3 HSPs)
chr2 (12-47)||(10683859-10683894)
chr2 (12-47)||(20262250-20262285)
chr2 (11-47)||(45029438-45029474)


Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 55 - 313
Target Start/End: Original strand, 27854558 - 27854815
Alignment:
Q  55 accaaaccagaaccctcaaagaatacaaaagttaaaaaatcaaagcaagagagttagggaaaacggaaactaagaaggcccgtatccgtctctataaaag 154  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  27854558 accaaaccagaaccctcaaagaatacaaaagttaaaaaatcaaagcaagagagttagggaaaacggaaactaagaag-cccgtatccgtctctataaaag 27854656  T
Q  155 tcacttctaataaacataggaatagagtcccaccaaagaatatcaaccaagccatgaccatgatttgctaacttatccgtgcaacatttcgttcggaaaa 254  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  27854657 tcacttctaataaacataggaatagagtcccaccaaaaaacatcaaccaagccatgaccatgatttgctaacttatccgtgcaacatttcgttcgcaaaa 27854756  T
Q  255 gatatgagaagaaatttggtcattgccattagataattaaaaagtaacactagaagtgc 313  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  27854757 gatatgagaagaaatttggtcattgccattagattattaaaaagtaacactagaagtgc 27854815  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 340 - 380
Target Start/End: Original strand, 27854842 - 27854882
Alignment:
Q  340 tcatttatacttatataaatttattttaacataagattttt 380  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  27854842 tcatttatacttatataaatttattttaacatgagattttt 27854882  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 47
Target Start/End: Original strand, 2286691 - 2286726
Alignment:
Q  12 agagaaaaccaagccaatgggagaacaagagcaaga 47  Q
    ||||||||||||||||| ||||||||||||||||||    
T  2286691 agagaaaaccaagccaaggggagaacaagagcaaga 2286726  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 47
Target Start/End: Original strand, 29483355 - 29483390
Alignment:
Q  12 agagaaaaccaagccaatgggagaacaagagcaaga 47  Q
    ||||||||||||||||| ||||||||||||||||||    
T  29483355 agagaaaaccaagccaaggggagaacaagagcaaga 29483390  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 364992 - 364956
Alignment:
Q  11 cagagaaaaccaagccaatgggagaacaagagcaaga 47  Q
    |||||||||||||||||| ||||||||||||||||||    
T  364992 cagagaaaaccaagccaaggggagaacaagagcaaga 364956  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 24593990 - 24594026
Alignment:
Q  11 cagagaaaaccaagccaatgggagaacaagagcaaga 47  Q
    |||||||||||||||||| ||||||||||||||||||    
T  24593990 cagagaaaaccaagccaaagggagaacaagagcaaga 24594026  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 47
Target Start/End: Complemental strand, 9777231 - 9777196
Alignment:
Q  12 agagaaaaccaagccaatgggagaacaagagcaaga 47  Q
    ||||||||||||||||| ||||||||||||||||||    
T  9777231 agagaaaaccaagccaaggggagaacaagagcaaga 9777196  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 24668084 - 24668120
Alignment:
Q  11 cagagaaaaccaagccaatgggagaacaagagcaaga 47  Q
    |||| ||||||||||||| ||||||||||||||||||    
T  24668084 cagaaaaaaccaagccaaagggagaacaagagcaaga 24668120  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 24736679 - 24736715
Alignment:
Q  11 cagagaaaaccaagccaatgggagaacaagagcaaga 47  Q
    |||| ||||||||||||| ||||||||||||||||||    
T  24736679 cagaaaaaaccaagccaaagggagaacaagagcaaga 24736715  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 24737853 - 24737889
Alignment:
Q  11 cagagaaaaccaagccaatgggagaacaagagcaaga 47  Q
    |||| ||||||||||||| ||||||||||||||||||    
T  24737853 cagaaaaaaccaagccaaagggagaacaagagcaaga 24737889  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 24750622 - 24750658
Alignment:
Q  11 cagagaaaaccaagccaatgggagaacaagagcaaga 47  Q
    |||| ||||||||||||| ||||||||||||||||||    
T  24750622 cagaaaaaaccaagccaaagggagaacaagagcaaga 24750658  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 22724609 - 22724645
Alignment:
Q  11 cagagaaaaccaagccaatgggagaacaagagcaaga 47  Q
    |||||||||||||||||| ||||||||||||||||||    
T  22724609 cagagaaaaccaagccaaggggagaacaagagcaaga 22724645  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 36038937 - 36038901
Alignment:
Q  11 cagagaaaaccaagccaatgggagaacaagagcaaga 47  Q
    |||||||||||||||||| ||||||||||||||||||    
T  36038937 cagagaaaaccaagccaaggggagaacaagagcaaga 36038901  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 41403865 - 41403901
Alignment:
Q  11 cagagaaaaccaagccaatgggagaacaagagcaaga 47  Q
    |||||||||||||||||| ||||||||||||||||||    
T  41403865 cagagaaaaccaagccaaggggagaacaagagcaaga 41403901  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 47
Target Start/End: Complemental strand, 15535247 - 15535212
Alignment:
Q  12 agagaaaaccaagccaatgggagaacaagagcaaga 47  Q
    ||||||||||||||||| ||||||||||||||||||    
T  15535247 agagaaaaccaagccaaggggagaacaagagcaaga 15535212  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 47
Target Start/End: Original strand, 49546871 - 49546906
Alignment:
Q  12 agagaaaaccaagccaatgggagaacaagagcaaga 47  Q
    ||||||||||||||||| ||||||||||||||||||    
T  49546871 agagaaaaccaagccaaggggagaacaagagcaaga 49546906  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 12306189 - 12306153
Alignment:
Q  11 cagagaaaaccaagccaatgggagaacaagagcaaga 47  Q
    |||||||||||||||||| ||||||||||||||||||    
T  12306189 cagagaaaaccaagccaaggggagaacaagagcaaga 12306153  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 8373013 - 8373052
Alignment:
Q  8 aagcagagaaaaccaagccaatgggagaacaagagcaaga 47  Q
    ||||| ||||||||||||||| ||||||||||||||||||    
T  8373013 aagcaaagaaaaccaagccaaggggagaacaagagcaaga 8373052  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 178 - 268
Target Start/End: Original strand, 10378477 - 10378568
Alignment:
Q  178 agagtcccaccaaagaatatcaaccaagccatgaccatgatttgctaacttatccgtgcaac-atttcgttcggaaaagatatgagaagaaa 268  Q
    ||||| |||||||| || ||||||||||   ||||||||||||||||||||||| || |||| ||||| ||||  ||| |||||||| ||||    
T  10378477 agagtaccaccaaataacatcaaccaagttgtgaccatgatttgctaacttatctgtacaacaatttccttcgcgaaaaatatgagatgaaa 10378568  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 47
Target Start/End: Complemental strand, 16801159 - 16801124
Alignment:
Q  12 agagaaaaccaagccaatgggagaacaagagcaaga 47  Q
    ||||||||||||||||| ||||||||||||||||||    
T  16801159 agagaaaaccaagccaaggggagaacaagagcaaga 16801124  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 47
Target Start/End: Original strand, 20247713 - 20247748
Alignment:
Q  12 agagaaaaccaagccaatgggagaacaagagcaaga 47  Q
    ||||||||||||||||| ||||||||||||||||||    
T  20247713 agagaaaaccaagccaaggggagaacaagagcaaga 20247748  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 47
Target Start/End: Original strand, 38310724 - 38310759
Alignment:
Q  12 agagaaaaccaagccaatgggagaacaagagcaaga 47  Q
    ||||||||||||||||| ||||||||||||||||||    
T  38310724 agagaaaaccaagccaaggggagaacaagagcaaga 38310759  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 47
Target Start/End: Complemental strand, 54521888 - 54521853
Alignment:
Q  12 agagaaaaccaagccaatgggagaacaagagcaaga 47  Q
    ||||||||||||||||| ||||||||||||||||||    
T  54521888 agagaaaaccaagccaaggggagaacaagagcaaga 54521853  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 29543959 - 29543995
Alignment:
Q  11 cagagaaaaccaagccaatgggagaacaagagcaaga 47  Q
    |||||||||||||||||| | ||||||||||||||||    
T  29543959 cagagaaaaccaagccaaggagagaacaagagcaaga 29543995  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 46722512 - 46722548
Alignment:
Q  11 cagagaaaaccaagccaatgggagaacaagagcaaga 47  Q
    |||||||||||||||||| || |||||||||||||||    
T  46722512 cagagaaaaccaagccaaaggtagaacaagagcaaga 46722548  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 47
Target Start/End: Original strand, 23664049 - 23664084
Alignment:
Q  12 agagaaaaccaagccaatgggagaacaagagcaaga 47  Q
    ||||||||||||||||| ||||||||||||||||||    
T  23664049 agagaaaaccaagccaaggggagaacaagagcaaga 23664084  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 47
Target Start/End: Complemental strand, 29797677 - 29797642
Alignment:
Q  12 agagaaaaccaagccaatgggagaacaagagcaaga 47  Q
    ||||||||||||||||| ||||||||||||||||||    
T  29797677 agagaaaaccaagccaaggggagaacaagagcaaga 29797642  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 47
Target Start/End: Complemental strand, 29801496 - 29801461
Alignment:
Q  12 agagaaaaccaagccaatgggagaacaagagcaaga 47  Q
    ||||||||||||||||| ||||||||||||||||||    
T  29801496 agagaaaaccaagccaaggggagaacaagagcaaga 29801461  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 46
Target Start/End: Complemental strand, 11304315 - 11304281
Alignment:
Q  12 agagaaaaccaagccaatgggagaacaagagcaag 46  Q
    ||||||||||||||||| |||||||||||||||||    
T  11304315 agagaaaaccaagccaaggggagaacaagagcaag 11304281  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 47
Target Start/End: Original strand, 10683859 - 10683894
Alignment:
Q  12 agagaaaaccaagccaatgggagaacaagagcaaga 47  Q
    ||||||||||||||||| ||||||||||||||||||    
T  10683859 agagaaaaccaagccaaggggagaacaagagcaaga 10683894  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 47
Target Start/End: Complemental strand, 20262285 - 20262250
Alignment:
Q  12 agagaaaaccaagccaatgggagaacaagagcaaga 47  Q
    ||||||||||||||||| ||||||||||||||||||    
T  20262285 agagaaaaccaagccaaggggagaacaagagcaaga 20262250  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 45029474 - 45029438
Alignment:
Q  11 cagagaaaaccaagccaatgggagaacaagagcaaga 47  Q
    ||||||||||||||||||  |||||||||||||||||    
T  45029474 cagagaaaaccaagccaagaggagaacaagagcaaga 45029438  T

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