View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8511_low_36 (Length: 390)

Name: NF8511_low_36
Description: NF8511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8511_low_36
NF8511_low_36
[»] chr5 (13 HSPs)
chr5 (12-377)||(37705094-37705459)
chr5 (130-332)||(37437914-37438116)
chr5 (223-330)||(37700646-37700753)
chr5 (34-111)||(1629760-1629837)
chr5 (12-128)||(1629683-1629799)
chr5 (12-128)||(29532047-29532161)
chr5 (14-55)||(2143379-2143420)
chr5 (22-107)||(30384213-30384297)
chr5 (12-107)||(13953522-13953616)
chr5 (22-109)||(37704830-37704917)
chr5 (13-76)||(41232901-41232964)
chr5 (12-108)||(38458805-38458899)
chr5 (32-128)||(29531855-29531950)
[»] chr4 (21 HSPs)
chr4 (149-322)||(16840622-16840796)
chr4 (12-126)||(22519807-22519921)
chr4 (18-107)||(48194394-48194483)
chr4 (34-126)||(33617920-33618010)
chr4 (19-107)||(22889586-22889674)
chr4 (19-107)||(22941250-22941338)
chr4 (32-107)||(53769786-53769861)
chr4 (22-128)||(2323266-2323372)
chr4 (39-113)||(42676809-42676883)
chr4 (22-105)||(34013780-34013861)
chr4 (27-102)||(22519373-22519448)
chr4 (13-108)||(34717567-34717660)
chr4 (12-63)||(40070309-40070360)
chr4 (18-107)||(20141745-20141835)
chr4 (22-76)||(31095078-31095131)
chr4 (22-107)||(31095291-31095377)
chr4 (12-53)||(22519313-22519354)
chr4 (15-76)||(48194179-48194239)
chr4 (39-111)||(22519774-22519846)
chr4 (27-107)||(31095106-31095186)
chr4 (22-86)||(55368780-55368844)
[»] chr7 (20 HSPs)
chr7 (12-126)||(41331325-41331439)
chr7 (15-108)||(30551947-30552040)
chr7 (15-108)||(6589558-6589651)
chr7 (32-111)||(12422044-12422123)
chr7 (21-128)||(32804629-32804736)
chr7 (19-107)||(1532197-1532285)
chr7 (12-126)||(18128518-18128632)
chr7 (12-107)||(28003341-28003434)
chr7 (14-107)||(5755594-5755685)
chr7 (18-118)||(20389633-20389734)
chr7 (24-128)||(12422352-12422455)
chr7 (21-128)||(21921059-21921164)
chr7 (28-93)||(32918529-32918595)
chr7 (15-76)||(1532441-1532501)
chr7 (32-108)||(6586862-6586938)
chr7 (179-214)||(21595127-21595162)
chr7 (27-106)||(48447283-48447362)
chr7 (13-70)||(5762696-5762753)
chr7 (34-107)||(21921012-21921085)
chr7 (22-126)||(45477966-45478070)
[»] scaffold0591 (1 HSPs)
scaffold0591 (12-128)||(3888-4003)
[»] chr8 (13 HSPs)
chr8 (21-107)||(2277209-2277295)
chr8 (28-108)||(27532989-27533069)
chr8 (12-91)||(37064689-37064768)
chr8 (24-126)||(15907689-15907790)
chr8 (12-126)||(15907944-15908058)
chr8 (44-126)||(12807666-12807748)
chr8 (15-111)||(32566875-32566969)
chr8 (21-109)||(2967707-2967794)
chr8 (12-107)||(3806998-3807091)
chr8 (21-91)||(45445141-45445210)
chr8 (38-130)||(41123-41216)
chr8 (34-79)||(32566724-32566769)
chr8 (28-104)||(3806856-3806932)
[»] chr2 (15 HSPs)
chr2 (12-126)||(8198646-8198759)
chr2 (12-126)||(8203406-8203519)
chr2 (43-126)||(45385838-45385921)
chr2 (12-107)||(4558912-4559007)
chr2 (12-126)||(4923428-4923542)
chr2 (147-214)||(8265959-8266027)
chr2 (12-107)||(42053964-42054059)
chr2 (18-107)||(3289442-3289531)
chr2 (58-124)||(4558680-4558745)
chr2 (49-107)||(8198419-8198477)
chr2 (34-76)||(8198608-8198650)
chr2 (49-107)||(8203179-8203237)
chr2 (34-76)||(8203368-8203410)
chr2 (53-128)||(32546464-32546538)
chr2 (14-74)||(28358958-28359018)
[»] chr1 (19 HSPs)
chr1 (15-108)||(16554303-16554396)
chr1 (18-107)||(18470189-18470279)
chr1 (12-107)||(802251-802346)
chr1 (19-126)||(12656368-12656474)
chr1 (21-107)||(16026108-16026194)
chr1 (12-107)||(46530163-46530258)
chr1 (18-107)||(363615-363705)
chr1 (12-106)||(47726600-47726693)
chr1 (12-106)||(47747906-47747999)
chr1 (19-76)||(48130213-48130268)
chr1 (24-113)||(48130428-48130516)
chr1 (27-126)||(363806-363906)
chr1 (21-128)||(11016967-11017075)
chr1 (12-91)||(26706353-26706432)
chr1 (24-126)||(46530411-46530517)
chr1 (148-214)||(2125101-2125168)
chr1 (15-76)||(16026346-16026406)
chr1 (19-76)||(18470439-18470495)
chr1 (12-128)||(23808083-23808199)
[»] chr6 (10 HSPs)
chr6 (15-126)||(12458392-12458504)
chr6 (12-107)||(33547750-33547846)
chr6 (12-113)||(16419591-16419695)
chr6 (12-108)||(10544282-10544376)
chr6 (20-76)||(7202300-7202356)
chr6 (12-109)||(31314513-31314609)
chr6 (34-107)||(196063-196135)
chr6 (34-107)||(16419660-16419732)
chr6 (12-53)||(33547744-33547785)
chr6 (27-107)||(33547811-33547890)
[»] chr3 (9 HSPs)
chr3 (18-107)||(51265894-51265984)
chr3 (12-108)||(44291413-44291509)
chr3 (22-126)||(48200367-48200471)
chr3 (20-76)||(44291025-44291081)
chr3 (32-126)||(33291582-33291676)
chr3 (15-76)||(51265679-51265739)
chr3 (25-126)||(1662257-1662357)
chr3 (12-48)||(9343215-9343251)
chr3 (34-126)||(14747077-14747167)


Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 12 - 377
Target Start/End: Original strand, 37705094 - 37705459
Alignment:
Q  12 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  37705094 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaatcttaaatgaccaatttcttacaactaaataacttaaaagac 37705193  T
Q  112 ttatggtgtaatttaacatttattttatgtacgtgttttttgtatggttcttaactaaactacaaaaatttctttaaatttataattttttcaaagtttg 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  37705194 ttatggtgtaatttaacatttattttatgtacgtgttttttgtatggttcttaactaaactacaaaaatttctttaaatttataatttcttcaaagtttg 37705293  T
Q  212 ttacagcacaaaagaaaatgcattgagcatataaaaagaaaaagtatcagatgtcatcggatatcgatactctactcgtgagttctacggtagaccacct 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||    
T  37705294 ttacagcacaaaagaaaatgcattgagcatataaaaagaaaaagtatcagatgccatcggatatcgatactcaactcgtgggttctacggtagaccacct 37705393  T
Q  312 ttataattggttcatcatggaccacatttcttatatttacgactaagtgggtgacttgattgatgt 377  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37705394 ttataattggttcatcatggaccacatttcttatatttacgactaagtgggtgacttgattgatgt 37705459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 130 - 332
Target Start/End: Original strand, 37437914 - 37438116
Alignment:
Q  130 tttattttatgtacgtgttttttgtatggttcttaactaaactacaaaaatttctttaaatttataattttttcaaagtttgttacagcacaaaagaaaa 229  Q
    ||||||||||||   | |||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||| || ||| |||||| |||||||    
T  37437914 tttattttatgtgttttttttttctatggttcttaactaaactacaaaaatttctttaaatttataatttcctcaaagcttattatagcacataagaaaa 37438013  T
Q  230 tgcattgagcatataaaaagaaaaagtatcagatgtcatcggatatcgatactctactcgtgagttctacggtagaccacctttataattggttcatcat 329  Q
    |||| |||||||||||||||||||||||| |  ||||||  |||||||||||||||||  |||||||||| ||| |||||||||||||  ||||||||||    
T  37438014 tgcactgagcatataaaaagaaaaagtattaagtgtcatatgatatcgatactctactattgagttctactgtaaaccacctttataagcggttcatcat 37438113  T
Q  330 gga 332  Q
    |||    
T  37438114 gga 37438116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 223 - 330
Target Start/End: Original strand, 37700646 - 37700753
Alignment:
Q  223 aagaaaatgcattgagcatataaaaagaaaaagtatcagatgtcatcggatatcgatactctactcgtgagttctacggtagaccacctttataattggt 322  Q
    ||||||||||| |||||| ||||||||||||  ||| |  ||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||| ||||    
T  37700646 aagaaaatgcactgagcacataaaaagaaaacatattaagtgtcatcggatattgatactctactcgtgagttctaccgtagaccacttttataagtggt 37700745  T
Q  323 tcatcatg 330  Q
    ||||||||    
T  37700746 tcatcatg 37700753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 111
Target Start/End: Complemental strand, 1629837 - 1629760
Alignment:
Q  34 ttaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 111  Q
    |||| ||||||||||||| ||| || |||| |||||||||||| |||| |||| |||||| ||| |||||||||||||    
T  1629837 ttaaataacttaaaggacttaattgctacggaaaaaacttaaaggatcgatttgttacaattaattaacttaaaagac 1629760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 12 - 128
Target Start/End: Complemental strand, 1629799 - 1629683
Alignment:
Q  12 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 111  Q
    |||||||| | | |||||| |||||||||||||||| ||||||| | ||||  ||||   |||||  |  ||||| |||||| ||||||||||||| |||    
T  1629799 ttaaaggatcgatttgttacaattaattaacttaaaagacctaatttgtacagaaaatttttaaagaacgaatttattacaattaaataacttaaaggac 1629700  T
Q  112 ttatggtgtaatttaac 128  Q
    || ||||||||||||||    
T  1629699 ttttggtgtaatttaac 1629683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 12 - 128
Target Start/End: Original strand, 29532047 - 29532161
Alignment:
Q  12 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 111  Q
    ||||| ||||||||| ||| | ||||||||| ||||| | ||||||| |||| |||||| ||||| | ||||||| |||||| | |||||||| ||||||    
T  29532047 ttaaatgaccaactttttacagttaattaacataaagaagctaagtgatacg-aaaaaatttaaaggttcaatttgttacaattgaataactt-aaagac 29532144  T
Q  112 ttatggtgtaatttaac 128  Q
     |||| |||||||||||    
T  29532145 atatgatgtaatttaac 29532161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 2143379 - 2143420
Alignment:
Q  14 aaaggaccaacttgttataattaattaacttaaaggacctaa 55  Q
    ||||||| ||||||||| ||||||||||||||||||||||||    
T  2143379 aaaggactaacttgttacaattaattaacttaaaggacctaa 2143420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 107
Target Start/End: Complemental strand, 30384297 - 30384213
Alignment:
Q  22 aacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 107  Q
    ||||||||| |||||| ||||||||| ||| |||||  |||| |||||||||||| ||  ||||| |||||| |||||||||||||    
T  30384297 aacttgttacaattaaataacttaaaagacgtaagtaatacg-aaaaaacttaaaagacaaatttgttacaattaaataacttaaa 30384213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 13953522 - 13953616
Alignment:
Q  12 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 107  Q
    ||||| ||| ||||||||| |||||||||||||||| ||| |||| |||| | ||||||||||||  | |||||| ||| || |||| ||||||||    
T  13953522 ttaaaagacaaacttgttacaattaattaacttaaatgacttaagcggtatg-aaaaaacttaaaaaaccaatttattataattaaacaacttaaa 13953616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 109
Target Start/End: Complemental strand, 37704917 - 37704830
Alignment:
Q  22 aacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaag 109  Q
    |||||||||||||||| ||||||||| |||  ||||| |||| ||||| ||||||  | | |||| ||| || |||||||||||||||    
T  37704917 aacttgttataattaaataacttaaatgacgcaagtgatacgaaaaaatcttaaaaaaccgatttgttataattaaataacttaaaag 37704830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 41232964 - 41232901
Alignment:
Q  13 taaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 76  Q
    |||| ||||||||| ||| |||||||| |||||||||| ||||||||||   ||||||||||||    
T  41232964 taaaagaccaacttattacaattaattgacttaaaggatctaagtggtatcaaaaaaacttaaa 41232901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 108
Target Start/End: Original strand, 38458805 - 38458899
Alignment:
Q  12 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 108  Q
    ||||| ||| ||||| ||| ||| || ||||||||| ||  ||||||||||| ||||||||||||  |  ||||| |||||| ||||||||||||||    
T  38458805 ttaaatgactaacttattacaataaaataacttaaaagatataagtggtacgaaaaaaacttaaa--actaatttattacaattaaataacttaaaa 38458899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 128
Target Start/End: Complemental strand, 29531950 - 29531855
Alignment:
Q  32 aattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaatttaac 128  Q
    |||||| ||||||||| ||| ||| || |||| |||||||||||| ||  ||||| |||||| ||||||||||||| ||| | |  |||||||||||    
T  29531950 aattaaataacttaaatgacgtaaatgatacg-aaaaaacttaaaggactaatttattacaattaaataacttaaatgacatctcatgtaatttaac 29531855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 149 - 322
Target Start/End: Complemental strand, 16840796 - 16840622
Alignment:
Q  149 ttttgtatggttcttaactaaactacaaaaatttctttaaatttataattttttcaaagtttgttacagcacaaaagaaaatgcattgagcatataaaaa 248  Q
    |||| ||| ||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||| | || | ||||||||| | | ||||||||||||    
T  16840796 ttttttatagtttttaactaaactacaaaaatttctttaaatctataatttattcaaagtttgttataacaaataagaaaatgtactaagcatataaaaa 16840697  T
Q  249 gaaaaagtatcagatgtcatcggata-tcgatactctactcgtgagttctacggtagaccacctttataattggt 322  Q
    |||||||||| |  ||||||  |||| | ||||||||||||||||||||||  ||| ||||| ||||||| ||||    
T  16840696 gaaaaagtattaagtgtcataagatatttgatactctactcgtgagttctaaagtaaaccacttttataagtggt 16840622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 12 - 126
Target Start/End: Original strand, 22519807 - 22519921
Alignment:
Q  12 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtac-gtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaaga 110  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||||| | ||||||||| || || |||||| |||||| ||||||| || |||||    
T  22519807 ttaaaggatcaacttgttataattaattaacttaaaagacctaagtggtacggaaaaaaactttaaggaccaatttgttacaattaaataa-tttaaaga 22519905  T
Q  111 cttatggtgtaattta 126  Q
    | | ||||||||||||    
T  22519906 cctctggtgtaattta 22519921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 48194394 - 48194483
Alignment:
Q  18 gaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 107  Q
    ||||||||||||| | |||| |||||||||||||||||| |||||| ||||||| ||||||||||| || |||||| |||||||||||||    
T  48194394 gaccaacttgttacagttaaataacttaaaggacctaagaggtacgaaaaaaacgtaaatgatcaacttattacaattaaataacttaaa 48194483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 34 - 126
Target Start/End: Original strand, 33617920 - 33618010
Alignment:
Q  34 ttaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 126  Q
    ||||||||||||||||||||||| ||||||  ||||||||||| || |||||| |||||| ||||||||||||| ||| | | ||||||||||    
T  33617920 ttaattaacttaaaggacctaagcggtacg--aaaaacttaaaggaccaatttattacaattaaataacttaaatgacctcttgtgtaattta 33618010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 22889674 - 22889586
Alignment:
Q  19 accaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 107  Q
    |||||||||||| |||| |||||||||||||| | ||| |||||  ||||||||| || || |||||| ||| || |||||||||||||    
T  22889674 accaacttgttacaatttattaacttaaaggatcaaagcggtacaaaaaaaactttaaggaccaatttattataattaaataacttaaa 22889586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 22941338 - 22941250
Alignment:
Q  19 accaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 107  Q
    |||||||||||| |||| |||||||||||||| | ||| |||||  ||||||||| || || |||||| ||| || |||||||||||||    
T  22941338 accaacttgttacaatttattaacttaaaggatcaaagcggtacaaaaaaaactttaaggaccaatttattataattaaataacttaaa 22941250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 107
Target Start/End: Original strand, 53769786 - 53769861
Alignment:
Q  32 aattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 107  Q
    |||||| ||| ||||| ||||||||||||| | |||| ||||||||||| ||||| |||||| ||||||| |||||    
T  53769786 aattaaataatttaaaagacctaagtggtatgaaaaatacttaaatgattaatttattacaattaaataatttaaa 53769861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 128
Target Start/End: Complemental strand, 2323372 - 2323266
Alignment:
Q  22 aacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgta 121  Q
    ||||||||| ||||||||||||| || || |||  ||||||  |||||||||||| |   ||||| |||||| ||||||| ||||| ||||| || ||||    
T  2323372 aacttgttacaattaattaacttgaaagaactacatggtaccaaaaaaacttaaagggctaatttgttacaattaaataatttaaaggacttttgatgta 2323273  T
Q  122 atttaac 128  Q
    |||||||    
T  2323272 atttaac 2323266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 113
Target Start/End: Original strand, 42676809 - 42676883
Alignment:
Q  39 taacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagactt 113  Q
    ||||||||| |||||||||| |||| ||||||| |||| ||| || || |||||| ||| |||||||||||||||    
T  42676809 taacttaaatgacctaagtgatacgaaaaaaacataaaggattaacttgttacaattaattaacttaaaagactt 42676883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 34013780 - 34013861
Alignment:
Q  22 aacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataactta 105  Q
    ||||| ||||| |||||||| ||||||||| ||||| ||| | |||||  ||||||||| ||||| |||||| |||||||||||    
T  34013780 aacttattatatttaattaatttaaaggacttaagtagtatgaaaaaa--ttaaatgattaatttgttacaattaaataactta 34013861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 27 - 102
Target Start/End: Complemental strand, 22519448 - 22519373
Alignment:
Q  27 gttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataac 102  Q
    |||| |||||| |||||||||||||||||||| |||| |||| ||||||| ||  || || |||||| ||||||||    
T  22519448 gttacaattaaataacttaaaggacctaagtgttacgaaaaatacttaaaggactaacttgttacaattaaataac 22519373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 34717567 - 34717660
Alignment:
Q  13 taaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 108  Q
    |||| ||| ||||||||  |||||||||||||||| ||| || ||| |||| ||||||||||||| |  ||||| |||||| ||||||||||||||    
T  34717567 taaaagacaaacttgtttcaattaattaacttaaaagacttaggtgatacg-aaaaaacttaaat-acaaatttattacaattaaataacttaaaa 34717660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 40070309 - 40070360
Alignment:
Q  12 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacg 63  Q
    |||||||| |||||||||||| |||||||||||||| || ||||||| ||||    
T  40070309 ttaaaggatcaacttgttatatttaattaacttaaatgatctaagtgatacg 40070360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 20141835 - 20141745
Alignment:
Q  18 gaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaa-acttaaatgatcaatttcttacaactaaataacttaaa 107  Q
    ||||||||||||| ||||||||||| ||||| ||||||||| |||  ||||| |||||||  | | | || |||||| |||||||||||||    
T  20141835 gaccaacttgttacaattaattaacataaagaacctaagtgatacaaaaaaagacttaaagaacctacttattacaattaaataacttaaa 20141745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 31095131 - 31095078
Alignment:
Q  22 aacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 76  Q
    |||||||||||||||| ||||||||||||| |||||| || | ||||||||||||    
T  31095131 aacttgttataattaaataacttaaaggacgtaagtgatatg-aaaaaacttaaa 31095078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 31095291 - 31095377
Alignment:
Q  22 aacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaat-gatcaatttcttacaactaaataacttaaa 107  Q
    ||||||||| || ||||||||||||| ||||||| ||||||| ||| || |||| | ||  ||||| |||||| |||||||||||||    
T  31095291 aacttgttacaactaattaacttaaaagacctaaatggtacgaaaataatttaagtggacaaatttattacaattaaataacttaaa 31095377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 22519354 - 22519313
Alignment:
Q  12 ttaaaggaccaacttgttataattaattaacttaaaggacct 53  Q
    ||||||||||| | |||||||||||| |||||||||||||||    
T  22519354 ttaaaggaccagcatgttataattaactaacttaaaggacct 22519313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 48194239 - 48194179
Alignment:
Q  15 aaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 76  Q
    |||||||||||||||| | |||| ||||||||||  | ||||||||||| ||||||||||||    
T  48194239 aaggaccaacttgttacagttaagtaacttaaagagcgtaagtggtacg-aaaaaacttaaa 48194179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 111
Target Start/End: Original strand, 22519774 - 22519846
Alignment:
Q  39 taacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 111  Q
    ||||||||| ||||||| || |||  |||||||||||| |||||| || ||| || ||| |||||||||||||    
T  22519774 taacttaaatgacctaattgatacagaaaaaacttaaaggatcaacttgttataattaattaacttaaaagac 22519846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 31095186 - 31095106
Alignment:
Q  27 gttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 107  Q
    |||| |||||| |||||||||| ||||||||| |||  | || ||||||||||| || || ||| || |||||||||||||    
T  31095186 gttacaattaaataacttaaagaacctaagtgttacaaacaatacttaaatgattaacttgttataattaaataacttaaa 31095106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 55368844 - 55368780
Alignment:
Q  22 aacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaattt 86  Q
    ||||| ||| || ||| ||| ||||||||  ||| ||||||| ||||||||||||||||||||||    
T  55368844 aacttattacaaataaataatttaaaggatataaatggtacgaaaaaaacttaaatgatcaattt 55368780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 12 - 126
Target Start/End: Original strand, 41331325 - 41331439
Alignment:
Q  12 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 111  Q
    |||||| ||||||||||||||||| ||||||||||| || ||| ||||||||  ||||||||||||||||||||| |||||| ||||||||||||| |||    
T  41331325 ttaaagaaccaacttgttataatttattaacttaaatgagctaggtggtacgagaaaaacttaaatgatcaatttattacaattaaataacttaaatgac 41331424  T
Q  112 ttatggtgtaattta 126  Q
    ||||| | |||||||    
T  41331425 ttatgatataattta 41331439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 15 - 108
Target Start/End: Original strand, 30551947 - 30552040
Alignment:
Q  15 aaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 108  Q
    |||||||||||||||| |||| ||||||||||| ||||||||||||||  |||||||||||| || |||||| |||||| ||||||||||||||    
T  30551947 aaggaccaacttgttacaattgattaacttaaatgacctaagtggtaccaaaaaaacttaaaggaccaatttattacaattaaataacttaaaa 30552040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 15 - 108
Target Start/End: Original strand, 6589558 - 6589651
Alignment:
Q  15 aaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 108  Q
    |||||||||||| ||| |||| ||||||||||| ||||||||||||||  |||||||||||| ||||||||| |||||| ||||| ||||||||    
T  6589558 aaggaccaacttattacaattgattaacttaaatgacctaagtggtaccaaaaaaacttaaaggatcaatttattacaattaaattacttaaaa 6589651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 32 - 111
Target Start/End: Complemental strand, 12422123 - 12422044
Alignment:
Q  32 aattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 111  Q
    |||||||| ||||||||||||||||||||| | ||||||||||||||| |||||| |||||| | |||||||||||||||    
T  12422123 aattaatttacttaaaggacctaagtggtatgaaaaaaacttaaatgaccaatttattacaatttaataacttaaaagac 12422044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 21 - 128
Target Start/End: Original strand, 32804629 - 32804736
Alignment:
Q  21 caacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgt 120  Q
    |||||||||  |||||||||||||||| ||| ||||| ||| | ||||||| |||| ||||||||| |||||| |||||| | |||||||||| ||||||    
T  32804629 caacttgttgcaattaattaacttaaatgacttaagttgtatgaaaaaaacctaaaagatcaatttattacaattaaatatcctaaaagacttgtggtgt 32804728  T
Q  121 aatttaac 128  Q
    ||||||||    
T  32804729 aatttaac 32804736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 1532285 - 1532197
Alignment:
Q  19 accaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 107  Q
    |||||||||||||| |||| |||||||||||||||||| |||||  ||||||  ||||||||||| || |||||| |||||||||||||    
T  1532285 accaacttgttatagttaaataacttaaaggacctaagaggtacaaaaaaaatgtaaatgatcaacttattacaattaaataacttaaa 1532197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 126
Target Start/End: Original strand, 18128518 - 18128632
Alignment:
Q  12 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaactt-aaatgatcaatttcttacaactaaataacttaaaaga 110  Q
    |||||| |||||||| ||| ||||||||||||||||| |||||||| ||||| ||||||||| ||| || |||||| |||||  ||||||| ||||| ||    
T  18128518 ttaaagcaccaacttattacaattaattaacttaaagaacctaagtagtacg-aaaaaacttaaaaggaccaatttattacatttaaataatttaaagga 18128616  T
Q  111 cttatggtgtaattta 126  Q
    | ||||||||||||||    
T  18128617 cctatggtgtaattta 18128632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 28003341 - 28003434
Alignment:
Q  12 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 107  Q
    |||||||| |||||||||| | |||||||||||||||||||||| ||||||| ||||||||| || |||||| || |||||| ||||||| |||||    
T  28003341 ttaaaggatcaacttgttacatttaattaacttaaaggacctaattggtacg-aaaaaactt-aacgatcaacttgttacaattaaataatttaaa 28003434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 5755685 - 5755594
Alignment:
Q  14 aaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 107  Q
    ||||||||||||||||| ||||||||||| |||| ||  |||||||||||  ||||| ||||| |  |||||| |||||| |||||||||||||    
T  5755685 aaaggaccaacttgttacaattaattaacataaatgatttaagtggtacg--aaaaaattaaagggccaatttgttacaattaaataacttaaa 5755594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 20389734 - 20389633
Alignment:
Q  18 gaccaacttgttataattaattaacttaaaggacctaagtggtacg-taaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatg 116  Q
    ||||||||||||| ||||||||||||||||| | |||||| |||||  ||||||||||||  |  | ||| |||||  ||||||||||||||||| ||||    
T  20389734 gaccaacttgttacaattaattaacttaaagcatctaagtagtacgaaaaaaaacttaaagaactactttgttacatttaaataacttaaaagacctatg 20389635  T
Q  117 gt 118  Q
    ||    
T  20389634 gt 20389633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 24 - 128
Target Start/End: Original strand, 12422352 - 12422455
Alignment:
Q  24 cttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaat 123  Q
    ||||||| |||||| ||||||||| ||| |||||| |||  |||||||||||| ||| ||||| |||||| |||||||||||||  | ||  ||||||||    
T  12422352 cttgttaaaattaaataacttaaaagacgtaagtgataca-aaaaaacttaaaggatgaatttgttacaattaaataacttaaagaaattccggtgtaat 12422450  T
Q  124 ttaac 128  Q
    |||||    
T  12422451 ttaac 12422455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 128
Target Start/End: Original strand, 21921059 - 21921164
Alignment:
Q  21 caacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgt 120  Q
    |||||||||| | ||||||||||||||| || |||||||||   |||||||||||||||  ||||  ||| |  ||||||||||||| |||||||| |||    
T  21921059 caacttgttacagttaattaacttaaag-acataagtggtaaa-aaaaaacttaaatgacaaattagttatagttaaataacttaaatgacttatgatgt 21921156  T
Q  121 aatttaac 128  Q
    ||||||||    
T  21921157 aatttaac 21921164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 93
Target Start/End: Complemental strand, 32918595 - 32918529
Alignment:
Q  28 ttataattaattaacttaaaggacctaagtggtacgtaa-aaaacttaaatgatcaatttcttacaa 93  Q
    ||||||||||||||||||||||| ||||||| |||| || |||||| ||| ||||||||| ||||||    
T  32918595 ttataattaattaacttaaaggagctaagtgatacgaaataaaactcaaaagatcaatttattacaa 32918529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 1532441 - 1532501
Alignment:
Q  15 aaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 76  Q
    |||||||||||||||| |||||| ||||||||||  | ||||||||||| ||||||||||||    
T  1532441 aaggaccaacttgttacaattaagtaacttaaagagcgtaagtggtacg-aaaaaacttaaa 1532501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 6586938 - 6586862
Alignment:
Q  32 aattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 108  Q
    |||| ||||||||||| ||||||||| ||||  |||||| ||||  ||||||||| |||||| ||||| ||||||||    
T  6586938 aattgattaacttaaatgacctaagtagtaccaaaaaaatttaagagatcaatttattacaattaaattacttaaaa 6586862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 179 - 214
Target Start/End: Complemental strand, 21595162 - 21595127
Alignment:
Q  179 atttctttaaatttataattttttcaaagtttgtta 214  Q
    ||||||||||||| ||||||||||||||||||||||    
T  21595162 atttctttaaattcataattttttcaaagtttgtta 21595127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 27 - 106
Target Start/End: Complemental strand, 48447362 - 48447283
Alignment:
Q  27 gttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaa 106  Q
    |||| |||||| |||||||||||||||||| | |||| |||| |||||||  |  ||||| |||||| ||||||||||||    
T  48447362 gttacaattaaataacttaaaggacctaagcgttacgaaaaatacttaaagtactaatttgttacaattaaataacttaa 48447283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 5762753 - 5762696
Alignment:
Q  13 taaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaa 70  Q
    ||||| |||||||||||| ||||||||||| || |  |||||||||||||| ||||||    
T  5762753 taaagaaccaacttgttacaattaattaacatatattacctaagtggtacggaaaaaa 5762696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 107
Target Start/End: Original strand, 21921012 - 21921085
Alignment:
Q  34 ttaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 107  Q
    |||| ||||||||||||||||| | ||||| ||||||||||||| | ||| || |||||  ||| |||||||||    
T  21921012 ttaaataacttaaaggacctaattagtacggaaaaaacttaaataaacaacttgttacagttaattaacttaaa 21921085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 126
Target Start/End: Original strand, 45477966 - 45478070
Alignment:
Q  22 aacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgta 121  Q
    ||||||||| || | ||||||||| ||| |||||||| ||   ||||||  | |||||||||||| |||||| ||||||| ||||||||  |  ||||||    
T  45477966 aacttgttacaacttattaacttatagggcctaagtgataaaaaaaaaaaattaatgatcaatttattacaattaaataatttaaaagatatgaggtgta 45478065  T
Q  122 attta 126  Q
    |||||    
T  45478066 attta 45478070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0591 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 12 - 128
Target Start/End: Original strand, 3888 - 4003
Alignment:
Q  12 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 111  Q
    ||||||||||||||||||| ||| ||||||||||||| |||| ||||||| | ||| |||||||||||||||||| |||||| |||||||| |||| |||    
T  3888 ttaaaggaccaacttgttacaatcaattaacttaaag-acctcagtggtaggaaaataacttaaatgatcaatttattacaattaaataacataaatgac 3986  T
Q  112 ttatggtgtaatttaac 128  Q
    || ||||||||||||||    
T  3987 ttctggtgtaatttaac 4003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 21 - 107
Target Start/End: Original strand, 2277209 - 2277295
Alignment:
Q  21 caacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 107  Q
    |||||||||| |||||||||||||||||||||||||||||||  |||||||||||| ||||||||| |||||| |||||||||||||    
T  2277209 caacttgttacaattaattaacttaaaggacctaagtggtacaaaaaaaacttaaaggatcaatttgttacaattaaataacttaaa 2277295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 27533069 - 27532989
Alignment:
Q  28 ttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 108  Q
    |||||||||| ||||||||||||| |||||||||| ||||||||||||| ||||||||| |||||| ||||||||||||||    
T  27533069 ttataattaaataacttaaaggacgtaagtggtacataaaaaacttaaaagatcaatttattacaattaaataacttaaaa 27532989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 12 - 91
Target Start/End: Original strand, 37064689 - 37064768
Alignment:
Q  12 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttac 91  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||| |||| ||||| ||||    
T  37064689 ttaaaggaccaacttgttataattaattaacttaaaggacttaagtggtgcgaaaaaaacttaattgattaatttattac 37064768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 24 - 126
Target Start/End: Complemental strand, 15907790 - 15907689
Alignment:
Q  24 cttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaat 123  Q
    ||||||||||||||||||||||||| |  ||||||||||| |||||||||||| || |||||| | |||| ||||||||||||| || || |||||||||    
T  15907790 cttgttataattaattaacttaaagaatataagtggtacgaaaaaaacttaaa-gaccaatttatcacaagtaaataacttaaaggatttctggtgtaat 15907692  T
Q  124 tta 126  Q
    |||    
T  15907691 tta 15907689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 126
Target Start/End: Original strand, 15907944 - 15908058
Alignment:
Q  12 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 111  Q
    |||||||| |||||||||||||||||||||| ||||  |||||||||||| | ||||||||||||| |  ||||| |||||  |||||| |||||| ||     
T  15907944 ttaaaggatcaacttgttataattaattaacctaaaaaacctaagtggtatgaaaaaaacttaaataactaatttattacagttaaatatcttaaaggat 15908043  T
Q  112 ttatggtgtaattta 126  Q
    || ||||||||||||    
T  15908044 ttttggtgtaattta 15908058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 44 - 126
Target Start/End: Original strand, 12807666 - 12807748
Alignment:
Q  44 taaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 126  Q
    |||||||||||||||||| |||||||| |||||  |||||||| | |||| ||||||||||||||||  | ||||||||||||    
T  12807666 taaaggacctaagtggtatgtaaaaaatttaaaaaatcaatttataacaattaaataacttaaaagatctctggtgtaattta 12807748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 111
Target Start/End: Original strand, 32566875 - 32566969
Alignment:
Q  15 aaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 111  Q
    |||||| | ||||||| ||||||| |||||||| ||||||| | |||| |||||  | |||| ||||||||||||| ||  ||||||||||||||||    
T  32566875 aaggactagcttgttacaattaataaacttaaatgacctaaatagtacataaaa--cctaaaggatcaatttcttataataaaataacttaaaagac 32566969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 109
Target Start/End: Original strand, 2967707 - 2967794
Alignment:
Q  21 caacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaag 109  Q
    ||||||||||||||||||||| |||||||| |||||| | | | ||||||||||||  | |||||| |||  | |||||||||||||||    
T  2967707 caacttgttataattaattaatttaaaggatctaagtagaaggaaaaaaacttaaa-aaacaatttgttaggattaaataacttaaaag 2967794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 3806998 - 3807091
Alignment:
Q  12 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 107  Q
    |||||| || ||||||||| |||||||||||||||| ||| ||||| |||  ||||||||||| | || |||||| |||| | ||||||| |||||    
T  3806998 ttaaagtactaacttgttaaaattaattaacttaaaagacataagttgta--taaaaaacttagaggaccaatttgttactattaaataatttaaa 3807091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 45445141 - 45445210
Alignment:
Q  21 caacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttac 91  Q
    ||||||||||| ||||| ||| ||| ||||||||| ||||||| |||||||||||| || |||||| ||||    
T  45445141 caacttgttatgattaaataatttacaggacctaattggtacg-aaaaaacttaaacgaccaatttattac 45445210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 130
Target Start/End: Original strand, 41123 - 41216
Alignment:
Q  38 ttaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaaga-cttatggtgtaatttaacat 130  Q
    ||||||||||  || ||||||||||  |||||||||||| ||  ||||| |||||| ||||||| ||||| || ||  ||||||||||||||||    
T  41123 ttaacttaaataacataagtggtacacaaaaaacttaaaggactaatttgttacaattaaataatttaaaggatctcttggtgtaatttaacat 41216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 79
Target Start/End: Complemental strand, 32566769 - 32566724
Alignment:
Q  34 ttaattaacttaaaggacctaagtggtacgtaaaaaacttaaatga 79  Q
    |||| ||||||||||||| ||||||| ||| |||||||||||||||    
T  32566769 ttaaataacttaaaggacttaagtggcacgaaaaaaacttaaatga 32566724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 104
Target Start/End: Complemental strand, 3806932 - 3806856
Alignment:
Q  28 ttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataactt 104  Q
    |||||||||| ||| | |||||||||||||| |||| |||| ||||||||||  || || |||||  ||||||||||    
T  3806932 ttataattaaataattaaaaggacctaagtgctacgaaaaatacttaaatgactaacttgttacagttaaataactt 3806856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 126
Target Start/End: Original strand, 8198646 - 8198759
Alignment:
Q  12 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 111  Q
    ||||||| ||||||| ||| ||||||||| |||||||||||||||||||||| |||||||||||| || |||||| |||||| ||| ||||||||| ||     
T  8198646 ttaaagggccaacttattacaattaattatcttaaaggacctaagtggtacggaaaaaacttaaa-gaccaatttgttacaattaactaacttaaaggat 8198744  T
Q  112 ttatggtgtaattta 126  Q
    || |||| |||||||    
T  8198745 ttctggtataattta 8198759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 126
Target Start/End: Original strand, 8203406 - 8203519
Alignment:
Q  12 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 111  Q
    ||||||| ||||||| ||| ||||||||| |||||||||||||||||||||| |||||||||||| || |||||| |||||| ||| ||||||||| ||     
T  8203406 ttaaagggccaacttattacaattaattatcttaaaggacctaagtggtacggaaaaaacttaaa-gaccaatttgttacaattaactaacttaaaggat 8203504  T
Q  112 ttatggtgtaattta 126  Q
    || |||| |||||||    
T  8203505 ttctggtataattta 8203519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 126
Target Start/End: Complemental strand, 45385921 - 45385838
Alignment:
Q  43 ttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 126  Q
    ||||||||| ||||||||||| |||||||||||| |  |||||| |||||| ||||||||||||| ||| ||||||||||||||    
T  45385921 ttaaaggacgtaagtggtacgaaaaaaacttaaagggccaatttgttacaattaaataacttaaaggacctatggtgtaattta 45385838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 4558912 - 4559007
Alignment:
Q  12 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggta-cgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 107  Q
    |||||||| |||||||||| ||||||||||| ||||| |||||||| ||| |  |||||||||||| ||||||||| |||||| |||||||||||||    
T  4558912 ttaaaggaacaacttgttacaattaattaacataaagtacctaagttgtaccaaaaaaaacttaaa-gatcaatttattacaattaaataacttaaa 4559007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 126
Target Start/End: Complemental strand, 4923542 - 4923428
Alignment:
Q  12 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 111  Q
    ||||||||  ||||| ||| |||| |||||| ||||  |||||| ||||||| ||||||| |||||||||||||| ||| || |||| ||||||| ||||    
T  4923542 ttaaaggattaacttattacaatttattaacgtaaaaaacctaaatggtacggaaaaaacataaatgatcaatttattataattaaaaaacttaagagac 4923443  T
Q  112 ttatggtgtaattta 126  Q
     |  |||||||||||    
T  4923442 atccggtgtaattta 4923428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 8266027 - 8265959
Alignment:
Q  147 ttttttgtatggttcttaactaaactacaaa-aatttctttaaatttataattttttcaaagtttgtta 214  Q
    ||||| ||||| ||||||||| ||||||| | ||||||||||||||||||||||| ||||| |||||||    
T  8266027 tttttcgtatgattcttaacttaactacatacaatttctttaaatttataattttctcaaattttgtta 8265959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 42054059 - 42053964
Alignment:
Q  12 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 107  Q
    ||||||||| ||||||||| ||||||  ||||||||| ||||||||| ||   | |||||||||| ||| || || ||| ||||||||||||||||    
T  42054059 ttaaaggactaacttgttaaaattaaacaacttaaagaacctaagtgatataaacaaaacttaaaggattaacttattataactaaataacttaaa 42053964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 3289442 - 3289531
Alignment:
Q  18 gaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 107  Q
    ||||||||||||| |||||||| | ||||| ||  |||||| |||  |||||||||||| || |||||| |||||| ||||||| |||||    
T  3289442 gaccaacttgttacaattaattcaattaaaagatttaagtgatacaaaaaaaacttaaaagaccaatttattacaattaaataatttaaa 3289531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 124
Target Start/End: Complemental strand, 4558745 - 4558680
Alignment:
Q  58 ggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaatt 124  Q
    |||||| |||||||||||| || |||||| |||||| |||||||||||| ||| |||| ||||||||    
T  4558745 ggtacgaaaaaaacttaaa-gaccaatttattacaattaaataacttaagagaattatcgtgtaatt 4558680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 107
Target Start/End: Complemental strand, 8198477 - 8198419
Alignment:
Q  49 gacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 107  Q
    ||||||||||||||| |||||| |||||  | |||||| |||||| |||||||||||||    
T  8198477 gacctaagtggtacgaaaaaaatttaaagaaccaatttattacaattaaataacttaaa 8198419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 76
Target Start/End: Original strand, 8198608 - 8198650
Alignment:
Q  34 ttaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 76  Q
    |||| ||||||||||||||||| ||||||| ||||||||||||    
T  8198608 ttaaataacttaaaggacctaattggtacggaaaaaacttaaa 8198650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 107
Target Start/End: Complemental strand, 8203237 - 8203179
Alignment:
Q  49 gacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 107  Q
    ||||||||||||||| |||||| |||||  | |||||| |||||| |||||||||||||    
T  8203237 gacctaagtggtacgaaaaaaatttaaagaaccaatttattacaattaaataacttaaa 8203179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 76
Target Start/End: Original strand, 8203368 - 8203410
Alignment:
Q  34 ttaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 76  Q
    |||| ||||||||||||||||| ||||||| ||||||||||||    
T  8203368 ttaaataacttaaaggacctaattggtacggaaaaaacttaaa 8203410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 128
Target Start/End: Original strand, 32546464 - 32546538
Alignment:
Q  53 taagtggtacgtaaaa-aacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaatttaac 128  Q
    ||||||||||| |||| |||||||||||||||||| |||| | |||| ||||||||  || | ||||||||||||||    
T  32546464 taagtggtacgaaaaataacttaaatgatcaatttattacgattaaaaaacttaaa--acctctggtgtaatttaac 32546538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 28358958 - 28359018
Alignment:
Q  14 aaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaactta 74  Q
    ||||||||||| ||||| | ||||||||||||||||| |||| || |||| | ||||||||    
T  28358958 aaaggaccaacctgttacatttaattaacttaaaggaactaattgatacgaacaaaactta 28359018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 15 - 108
Target Start/End: Complemental strand, 16554396 - 16554303
Alignment:
Q  15 aaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 108  Q
    |||||||||||||||| |||| ||||||||||| ||| ||||||||||  |||||||||||| || |||||| |||||| ||||||||||||||    
T  16554396 aaggaccaacttgttacaattgattaacttaaatgacttaagtggtaccaaaaaaacttaaaggaccaatttattacaattaaataacttaaaa 16554303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 18470279 - 18470189
Alignment:
Q  18 gaccaacttgttataattaattaacttaaaggacctaagtggtacg-taaaaaacttaaatgatcaatttcttacaactaaataacttaaa 107  Q
    ||||||||||||| | |||| |||||||||||||||||| ||||||  ||||||| ||||||||||| || |||||| |||||||||||||    
T  18470279 gaccaacttgttacagttaaataacttaaaggacctaagaggtacgaaaaaaaacgtaaatgatcaacttattacaattaaataacttaaa 18470189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 802251 - 802346
Alignment:
Q  12 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 107  Q
    ||||||||||||||||||| |||||||||| | ||||||  ||||||||||| |||||  ||||| || |||||| |||||  |||||||||||||    
T  802251 ttaaaggaccaacttgttacaattaattaattcaaaggatataagtggtacgaaaaaagtttaaaggaccaatttattacatttaaataacttaaa 802346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 12656368 - 12656474
Alignment:
Q  19 accaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggt 118  Q
    |||||||| ||| ||||||||||||||||||   ||||||||||| |||||| |||||  |||||| | |||||| ||||||||||||| |||||  |||    
T  12656368 accaacttattacaattaattaacttaaagggtttaagtggtacg-aaaaaatttaaaaaatcaatatgttacaattaaataacttaaaggactttcggt 12656466  T
Q  119 gtaattta 126  Q
    ||||||||    
T  12656467 gtaattta 12656474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 16026194 - 16026108
Alignment:
Q  21 caacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 107  Q
    |||||| ||| | |||| |||||||||||||||||| |||||| ||||||  |||||||| || || |||||| |||||||||||||    
T  16026194 caacttattacagttaaataacttaaaggacctaagaggtacgaaaaaaatgtaaatgattaacttattacaattaaataacttaaa 16026108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 46530258 - 46530163
Alignment:
Q  12 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 107  Q
    ||||||| | ||||||||| |||||||||||||||| |||||||||||| || |||| | |||||  | || ||| | |||| |||||||||||||    
T  46530258 ttaaagggcaaacttgttacaattaattaacttaaaagacctaagtggtgcgaaaaagaattaaagaaccagtttgtgacaattaaataacttaaa 46530163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 363705 - 363615
Alignment:
Q  18 gaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaa-acttaaatgatcaatttcttacaactaaataacttaaa 107  Q
    ||||||||||||| ||||||||||| ||||| ||||||||| |||  ||||| |||||||  | | |||| |||||| |||||||||||||    
T  363705 gaccaacttgttacaattaattaacataaagaacctaagtgatacaaaaaaagacttaaagaacctatttattacaattaaataacttaaa 363615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 47726600 - 47726693
Alignment:
Q  12 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaa 106  Q
    ||||||||||| ||||||  |  ||||||||||||| |||||||||| || | ||||||||||||| | |||||| ||||||  |||||||||||    
T  47726600 ttaaaggaccatcttgttcgagctaattaacttaaatgacctaagtgatatgaaaaaaacttaaat-accaatttattacaataaaataacttaa 47726693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 47747906 - 47747999
Alignment:
Q  12 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaa 106  Q
    ||||||||||| ||||||  |  ||||||||||||| |||||||||| || | ||||||||||||| | |||||| ||||||  |||||||||||    
T  47747906 ttaaaggaccatcttgttcgagctaattaacttaaatgacctaagtgatatgaaaaaaacttaaat-accaatttattacaataaaataacttaa 47747999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 48130268 - 48130213
Alignment:
Q  19 accaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 76  Q
    |||||||||||| |||||||||||||||| || |||||||||||  ||||||||||||    
T  48130268 accaacttgttacaattaattaacttaaatgatctaagtggtac--aaaaaacttaaa 48130213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 24 - 113
Target Start/End: Original strand, 48130428 - 48130516
Alignment:
Q  24 cttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagactt 113  Q
    ||||||| || ||||||||||||| ||||||| |||||   | ||||||||||| |||||||| |||||| ||||||| ||||| |||||    
T  48130428 cttgttacaagtaattaacttaaaagacctaaatggtaaa-agaaaacttaaataatcaatttattacaattaaataatttaaaggactt 48130516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 363806 - 363906
Alignment:
Q  27 gttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaag-acttatggtgtaattt 125  Q
    |||| ||||||  |||||||| ||| ||||   |||| |||| ||||||||||  |||||||||||| ||||||||||||||| || | |||||||||||    
T  363806 gttacaattaaacaacttaaatgacttaagcattacgaaaaatacttaaatgacaaatttcttacaattaaataacttaaaagaacatctggtgtaattt 363905  T
Q  126 a 126  Q
    |    
T  363906 a 363906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 128
Target Start/End: Original strand, 11016967 - 11017075
Alignment:
Q  21 caacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaa-atgatcaatttcttacaactaaataacttaaaagacttatggtg 119  Q
    |||||||||| |||||| |||||||||  ||||||||| || | ||||||  ||| | ||| ||||| ||| || ||||||||||||| ||| ||| |||    
T  11016967 caacttgttacaattaaataacttaaaacacctaagtgatatgcaaaaaaaataagaagattaatttattataattaaataacttaaaggacatatagtg 11017066  T
Q  120 taatttaac 128  Q
    |||||||||    
T  11017067 taatttaac 11017075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 91
Target Start/End: Original strand, 26706353 - 26706432
Alignment:
Q  12 ttaaaggaccaacttgttataattaattaactt-aaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttac 91  Q
    ||||||||| ||||||| ||||||||||||||| ||||||| ||| || |||| ||||||||||||  |||||||| ||||    
T  26706353 ttaaaggacaaacttgtaataattaattaacttaaaaggacttaaatgatacg-aaaaaacttaaagaatcaatttattac 26706432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 126
Target Start/End: Original strand, 46530411 - 46530517
Alignment:
Q  24 cttgttataattaattaacttaaaggacctaagtggtacgtaaaaaa---cttaaat-gatcaatttcttacaactaaataacttaaaagacttatggtg 119  Q
    ||||||| |||||||||||||||| ||| | ||||||||| ||||||   ||||||  || |||||| |||||| ||||||||| ||| ||| | |||||    
T  46530411 cttgttacaattaattaacttaaatgacgtgagtggtacgaaaaaaaaaacttaaaaagagcaatttgttacaaataaataactaaaatgacatctggtg 46530510  T
Q  120 taattta 126  Q
    |||||||    
T  46530511 taattta 46530517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 148 - 214
Target Start/End: Original strand, 2125101 - 2125168
Alignment:
Q  148 tttttgtatggttcttaactaaact-acaaaaatttctttaaatttataattttttcaaagtttgtta 214  Q
    |||| |||||||||||||||||| | || |  |||| ||||||||||||||||| |||||||||||||    
T  2125101 ttttcgtatggttcttaactaaattcaccatgatttttttaaatttataattttctcaaagtttgtta 2125168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 16026346 - 16026406
Alignment:
Q  15 aaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 76  Q
    |||||||||||||||| |||||| ||||||||||  | ||||| ||||| ||||||||||||    
T  16026346 aaggaccaacttgttacaattaagtaacttaaagagcgtaagttgtacg-aaaaaacttaaa 16026406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 18470439 - 18470495
Alignment:
Q  19 accaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 76  Q
    |||||||||||| |||||| ||||||||||  | ||||||||||| ||||||||||||    
T  18470439 accaacttgttacaattaagtaacttaaagagcgtaagtggtacg-aaaaaacttaaa 18470495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 128
Target Start/End: Original strand, 23808083 - 23808199
Alignment:
Q  12 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 111  Q
    ||||| ||||||||| ||| |||||| ||||||||  ||||||| || || |  ||||||| ||| ||  ||||| |||||| |||| |||||||||||     
T  23808083 ttaaatgaccaacttattacaattaaataacttaatagacctaactgatatgagaaaaactaaaaagaataatttattacaattaaacaacttaaaagat 23808182  T
Q  112 ttatggtgtaatttaac 128  Q
     | || |||||||||||    
T  23808183 ctttgatgtaatttaac 23808199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 15 - 126
Target Start/End: Original strand, 12458392 - 12458504
Alignment:
Q  15 aaggaccaacttgttataattaattaacttaaaggacctaagtggtac-gtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagactt 113  Q
    ||||||||||||||| ||||| ||||||||||||||||||||  |||| | ||||||||||||  | ||| || |||||| ||||||||||||| |||||    
T  12458392 aaggaccaacttgttttaatttattaacttaaaggacctaagaagtacgggaaaaaacttaaagtaccaaattgttacaattaaataacttaaaggactt 12458491  T
Q  114 atggtgtaattta 126  Q
     | ||||||||||    
T  12458492 ctagtgtaattta 12458504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 33547846 - 33547750
Alignment:
Q  12 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaa-aaacttaaatgatcaatttcttacaactaaataacttaaa 107  Q
    ||||| ||| ||||||||| |||||||||||||||||||| ||||||| ||  ||| ||||||||| || |||||| |||||| |||||||||||||    
T  33547846 ttaaaagacaaacttgttacaattaattaacttaaaggacataagtggaacaaaaataaacttaaaggaccaatttgttacaattaaataacttaaa 33547750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 113
Target Start/End: Complemental strand, 16419695 - 16419591
Alignment:
Q  12 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtac---gtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 108  Q
    ||||| ||||||||||||| |||||||||||||||| || |||| ||||||     |||| |||| |||||||||||| |||||| |||||||||||||     
T  16419695 ttaaatgaccaacttgttacaattaattaacttaaatgatctaattggtacaaaagaaaatacttcaatgatcaatttgttacaattaaataacttaaag 16419596  T
Q  109 gactt 113  Q
    |||||    
T  16419595 gactt 16419591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 108
Target Start/End: Original strand, 10544282 - 10544376
Alignment:
Q  12 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 108  Q
    ||||| || |||||| ||||||||||||||||||| ||| |||| | ||||| ||||||||||||   ||||||| |||||  ||||||||||||||    
T  10544282 ttaaatgatcaacttattataattaattaacttaatggatctaactagtacgaaaaaaacttaaa--gtcaatttgttacagataaataacttaaaa 10544376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 7202356 - 7202300
Alignment:
Q  20 ccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 76  Q
    ||||| ||||| ||||||||||| |||||||||||| ||||||| ||||||||||||    
T  7202356 ccaacatgttacaattaattaacataaaggacctaaatggtacgaaaaaaacttaaa 7202300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 31314609 - 31314513
Alignment:
Q  12 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaag 109  Q
    ||||| ||| || ||||||||||||| |||||||||  || |||||| |||  ||||||||||||||||||| || ||| || ||||||||| |||||    
T  31314609 ttaaatgactaatttgttataattaaataacttaaaa-acataagtgatactgaaaaaacttaaatgatcaacttgttataattaaataactcaaaag 31314513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 107
Target Start/End: Complemental strand, 196135 - 196063
Alignment:
Q  34 ttaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 107  Q
    |||| ||||||||||||||||| || |||  ||||||||||||| |||||||| |||||| ||| ||| |||||    
T  196135 ttaagtaacttaaaggacctaattgatactgaaaaaacttaaat-atcaatttgttacaattaattaatttaaa 196063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 107
Target Start/End: Complemental strand, 16419732 - 16419660
Alignment:
Q  34 ttaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 107  Q
    |||| |||||||||||| | || ||||||| ||||||||||||||| ||| || |||||| ||| |||||||||    
T  16419732 ttaaataacttaaaggatcaaattggtacg-aaaaaacttaaatgaccaacttgttacaattaattaacttaaa 16419660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 33547785 - 33547744
Alignment:
Q  12 ttaaaggaccaacttgttataattaattaacttaaaggacct 53  Q
    |||||||||||| |||||| |||||| |||||||||||||||    
T  33547785 ttaaaggaccaatttgttacaattaaataacttaaaggacct 33547744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 33547890 - 33547811
Alignment:
Q  27 gttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 107  Q
    |||| |||||| ||||||||||||||||| ||||| | |||||||||||| ||  || || |||||| ||| |||||||||    
T  33547890 gttacaattaaataacttaaaggacctaaatggtatg-aaaaaacttaaaagacaaacttgttacaattaattaacttaaa 33547811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 51265894 - 51265984
Alignment:
Q  18 gaccaacttgttataattaattaacttaaaggacctaagtggtacg-taaaaaacttaaatgatcaatttcttacaactaaataacttaaa 107  Q
    ||||||||||||||| |||| |||||||||||| ||||| ||||||  ||||||| ||||||||||| || |||||| |||||||||||||    
T  51265894 gaccaacttgttatagttaaataacttaaaggatctaagaggtacgaaaaaaaacgtaaatgatcaacttattacaattaaataacttaaa 51265984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 108
Target Start/End: Original strand, 44291413 - 44291509
Alignment:
Q  12 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 108  Q
    ||||||||| ||||||||| |||||| ||||||||||||| |||||| |||  |||||| ||| | || |||||| |||||| ||||||||||||||    
T  44291413 ttaaaggactaacttgttacaattaaataacttaaaggacataagtgatactaaaaaaatttagaggaccaatttgttacaattaaataacttaaaa 44291509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 22 - 126
Target Start/End: Original strand, 48200367 - 48200471
Alignment:
Q  22 aacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgta 121  Q
    ||||| ||| ||| |||||| ||||| ||| |||| |||||| |||||| ||||||||||||||  |||||| ||||||| |||||||| || | |||||    
T  48200367 aacttattacaatcaattaatttaaaagacttaagcggtacgaaaaaaaattaaatgatcaattctttacaattaaataagttaaaagatttctagtgta 48200466  T
Q  122 attta 126  Q
    |||||    
T  48200467 attta 48200471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 44291081 - 44291025
Alignment:
Q  20 ccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 76  Q
    ||||||||||| || ||||||||||||| ||| ||||||||||| ||||||||||||    
T  44291081 ccaacttgttacaactaattaacttaaatgacttaagtggtacgaaaaaaacttaaa 44291025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 126
Target Start/End: Original strand, 33291582 - 33291676
Alignment:
Q  32 aattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 126  Q
    |||||||||||||||| ||| |||||||||   |||||  |||||  |  ||||| |||||| ||||||||||||| |||||||| |||||||||    
T  33291582 aattaattaacttaaatgacataagtggtataaaaaaagtttaaagtactaatttgttacaattaaataacttaaaggacttatgttgtaattta 33291676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 51265739 - 51265679
Alignment:
Q  15 aaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 76  Q
    |||||||||||||||| |||||| ||||||||||  | ||||||||||| ||||||||||||    
T  51265739 aaggaccaacttgttacaattaagtaacttaaagagcgtaagtggtacg-aaaaaacttaaa 51265679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 126
Target Start/End: Original strand, 1662257 - 1662357
Alignment:
Q  25 ttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaatt 124  Q
    |||||| ||||||||||| ||| ||| ||||||||||   |||||||||||| ||||||||| || ||| ||||||  ||||| ||| | || |||||||    
T  1662257 ttgttacaattaattaacataatggatctaagtggtata-aaaaaacttaaaagatcaatttattgcaattaaatactttaaaggacctctgatgtaatt 1662355  T
Q  125 ta 126  Q
    ||    
T  1662356 ta 1662357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 9343215 - 9343251
Alignment:
Q  12 ttaaaggaccaacttgttataattaattaacttaaag 48  Q
    ||||||||||||||| |||||||||| ||||||||||    
T  9343215 ttaaaggaccaacttattataattaaataacttaaag 9343251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 126
Target Start/End: Original strand, 14747077 - 14747167
Alignment:
Q  34 ttaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 126  Q
    |||| |||| |||| |||||||||||||   ||||||||||||  ||||| || |||||| ||||||| ||||||||||| | ||||||||||    
T  14747077 ttaaataacataaatgacctaagtggtaaa-aaaaaacttaaaa-atcaaattgttacaattaaataaattaaaagactttttgtgtaattta 14747167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University