View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8511_low_39 (Length: 380)
Name: NF8511_low_39
Description: NF8511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8511_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 146; Significance: 8e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 66 - 247
Target Start/End: Complemental strand, 26967980 - 26967798
Alignment:
| Q |
66 |
cgatttaattcttgtatatggttggtgtaattannnnnnnacacttaaaaattaatcataattgttagatgattatgaacatttaattttaatcataagt |
165 |
Q |
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| T |
26967980 |
cgatttaattcttgtatatggttggtgtaattatttttttacacttaaaaattaatcataattgttagatgattatgaacatttaattttaatcatgaat |
26967881 |
T |
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| Q |
166 |
attttt-aagtcacatatatgtggttgtgatttgtttaaagtggaaataaaattgatataaaccatatatgaaaattaaactc |
247 |
Q |
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| T |
26967880 |
attttttaagtcacatatatgtggttgtgatttgtttaaagtggaaataaaattgatataaaccatatatgaaaattaaactc |
26967798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 311 - 366
Target Start/End: Complemental strand, 26967734 - 26967679
Alignment:
| Q |
311 |
cagattcttccatctccaactactggatcatttgctaataatcaaggcttcaattg |
366 |
Q |
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| T |
26967734 |
cagattcttccatctccaactactggatcatttgctaataatcaaggcttcaattg |
26967679 |
T |
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