View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8511_low_40 (Length: 379)
Name: NF8511_low_40
Description: NF8511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8511_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 104 - 361
Target Start/End: Original strand, 53744344 - 53744601
Alignment:
| Q |
104 |
gcagcaattcacaaattgaacttcaatcaatccttgaaaacaacacttatcatcactaatttcataatctccttagctagatccaagaacaacaactaca |
203 |
Q |
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| T |
53744344 |
gcagcaattcacaaattgaacttcaatcaatccttgaaaacaacacttatcatcactaatttcataatctccttagctagatccaagaacaacaactaca |
53744443 |
T |
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| Q |
204 |
atttcacgatcaactctgttgagtaacagaaattgaaattacagagcaagagcgaggagtacctgttcttcactcatgagttgctggagtctttctttaa |
303 |
Q |
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|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53744444 |
atttcacgatcaactctgttgactgacagaaattgaaattacagagcaagagcgaggagtacctgttcttcactcatgagttgctggagtctttctttaa |
53744543 |
T |
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| Q |
304 |
gagcaggaccatgccggccgccgctacgagcattgatgaaaacaaccataggagaagt |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53744544 |
gagcaggaccatgccggccgccgctacgagcattgatgaaaacaaccataggagaagt |
53744601 |
T |
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