View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8511_low_42 (Length: 374)
Name: NF8511_low_42
Description: NF8511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8511_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 47407536 - 47407898
Alignment:
| Q |
1 |
tactgatccacctcgcattctcttgggatcattgaataaactctgctgttctacacccaagtgattgagaccaatgctctgatgtggaattctccttttg |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47407536 |
tactgatccacctcgcattctcttaggatcattgaataaactctgctgttctacacccaagtgattgagaccaatgctctgatgtggaattctccttttg |
47407635 |
T |
|
| Q |
101 |
tgtgaattgagaggttgaggttgtggtcttagagatgataatgaaccagtgattttccccaaaaaaggattaaagttgccaccactaatttcatatggcg |
200 |
Q |
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| T |
47407636 |
tgtgaattgagaggttgaggttgtggtcttagagatgataatgaaccagtgattttccccaaaaaaggattaaagttgccaccactgatttcatatggcg |
47407735 |
T |
|
| Q |
201 |
atggaaaatgtatatgttgttgttgctgattataaaagccttgtgtgtgaactggggtgttttcagtttcttgactaatggtgttagaactagatggcag |
300 |
Q |
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| T |
47407736 |
atggaaaatgtatatgttgttgttgctgattataaaagccttgtgtgtgaactggggtgttttcagtttcttgacaaatggtgttagaactagatggcag |
47407835 |
T |
|
| Q |
301 |
taattgagttggttccactgcttgaacatcatgttcctgagattttttagtactgatgtccat |
363 |
Q |
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| T |
47407836 |
taattgagttggttccactgcttgaacatcatgttcctgagattttttagtactaatgtccat |
47407898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 122 - 363
Target Start/End: Original strand, 47421362 - 47421603
Alignment:
| Q |
122 |
tgtggtcttagagatgataatgaaccagtgattttccccaaaaaaggattaaagttgccaccactaatttcatatggcgatggaaaatgtatatgttgtt |
221 |
Q |
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| T |
47421362 |
tgtggtctgagagatgataatgaaccagtgattgtccccaaaaaagggttaaagttgcaaccactgatttcatatggcaatgggaaatgaatatgttgtt |
47421461 |
T |
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| Q |
222 |
gttgctgattataaaagccttgtgtgtgaactggggtgttttcagtttcttgactaatggtgttagaactagatggcagtaattgagttggttccactgc |
321 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| | |
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| T |
47421462 |
gttgctgattataaaagccttgtgtgcaaactggggtgttttcagtttcttgactaatggtgttagaactggatggtagtaattgagttggttccactac |
47421561 |
T |
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| Q |
322 |
ttgaacatcatgttcctgagattttttagtactgatgtccat |
363 |
Q |
| |
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| T |
47421562 |
tcgaacatcatgttcctgagattttttagcactgatgtccat |
47421603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 5 - 363
Target Start/End: Original strand, 47390426 - 47390784
Alignment:
| Q |
5 |
gatccacctcgcattctcttgggatcattgaataaactctgctgttctacacccaagtgattgagaccaatgctctgatgtggaattctccttttgtgtg |
104 |
Q |
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| T |
47390426 |
gatccacctggcattctcttaggatcattgaaagaactctgacgttctgcacctaagtgatttagaccaatgctcggatgtggaatttgccttatgtgtg |
47390525 |
T |
|
| Q |
105 |
aattgagaggttgaggttgtggtcttagagatgataatgaaccagtgattttccccaaaaaaggattaaagttgccaccactaatttcatatggcgatgg |
204 |
Q |
| |
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||| |||| |||||||||||||| | ||||||| |||||| |||| || |||| ||||| | | |||| |||||||| | |||||| |||||| |
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| T |
47390526 |
aatcatgaggatgaggttgtggtctgaaagatgatgatgaactagtggttgtcccggaaaaatggctgtagttaccaccactgcctccatatgtcgatgg |
47390625 |
T |
|
| Q |
205 |
aaaatgtatatgttgttgttgctgattataaaagccttgtgtgtgaactggggtgttttcagtttcttgactaatggtgttagaactagatggcagtaat |
304 |
Q |
| |
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||||||||||| ||||||||||| |||| | |||||| ||||||| | | |||||||||||||||||| | ||||||| |||| ||||| |
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| T |
47390626 |
gaaatgtatatgctgttgttgctgcttatttaggccttgcatgtgaacggcagatctttcagtttcttgactaacagcaatagaactggatgttggtaat |
47390725 |
T |
|
| Q |
305 |
tgagttggttccactgcttgaacatcatgttcctgagattttttagtactgatgtccat |
363 |
Q |
| |
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||| ||| || |||| || |||||||||||||||||| |||||||| |||||||||||| |
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|
| T |
47390726 |
tgatttgattgcactactcgaacatcatgttcctgaggttttttagcactgatgtccat |
47390784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 5 - 363
Target Start/End: Original strand, 47418786 - 47419144
Alignment:
| Q |
5 |
gatccacctcgcattctcttgggatcattgaataaactctgctgttctacacccaagtgattgagaccaatgctctgatgtggaattctccttttgtgtg |
104 |
Q |
| |
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|||| ||||||||||| ||| | ||| |||||| ||||||| || ||||||||||||||| ||||||||| || ||| ||||||||||||| ||||| |
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| T |
47418786 |
gatcaacctcgcattcacttagaatcgttgaatgtactctgccgtattacacccaagtgatttagaccaatgttcagatctggaattctccttatgtgta |
47418885 |
T |
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| Q |
105 |
aattgagaggttgaggttgtggtcttagagatgataatgaaccagtgattttccccaaaaaaggattaaagttgccaccactaatttcatatggcgatgg |
204 |
Q |
| |
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||| || | ||| |||||||||| |||||||||||||||||||| ||| |||| ||||| | | |||| |||||||| || |||||| |||||| |
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| T |
47418886 |
aatcatgatgatgaagttgtggtctgagagatgataatgaaccagttattgtcccggaaaaatggctgtagttaccaccactgcttccatatgtcgatgg |
47418985 |
T |
|
| Q |
205 |
aaaatgtatatgttgttgttgctgattataaaagccttgtgtgtgaactggggtgttttcagtttcttgactaatggtgttagaactagatggcagtaat |
304 |
Q |
| |
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||||||||||| ||||||||||| |||| || |||||| |||||| | || ||||||||||||||||||| | ||||||| |||| ||||| |
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| T |
47418986 |
gaaatgtatatgctgttgttgctgcttattaaggccttgcatgtgaatggtggatctttcagtttcttgactaatagcaatagaactggatgttggtaat |
47419085 |
T |
|
| Q |
305 |
tgagttggttccactgcttgaacatcatgttcctgagattttttagtactgatgtccat |
363 |
Q |
| |
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||| ||| || ||| || |||||||||||||||||| |||||||| |||||||||||| |
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| T |
47419086 |
tgatttgattgcacgactcgaacatcatgttcctgaggttttttagcactgatgtccat |
47419144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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