View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8511_low_43 (Length: 373)
Name: NF8511_low_43
Description: NF8511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8511_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 26 - 361
Target Start/End: Complemental strand, 214033 - 213685
Alignment:
| Q |
26 |
ataattcagtcaccgaatttggattgagattggcgcttctataacatgaaagcacagaactagaaaagaaaa-----tgaatacataaacaaaca----g |
116 |
Q |
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| T |
214033 |
ataattcaatcaccgaatttggattgagattggcgcttctataacatgaaagcacagaactagaaaagaaaagaaaatgaatacataaacaaacacagtg |
213934 |
T |
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| Q |
117 |
t----gtattcgaattcgttacttcacacaaaaccaaaaccctaaacttgaataaaaaatggaagaagaagacaacaacagaagaagaatgatggagaga |
212 |
Q |
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| T |
213933 |
tatcagtattcgaattctttactatacacaaaaccaaaaccctaaacttgaatcaaaaatggaagaagaagacaacaacagaagaagaatgatggagaga |
213834 |
T |
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| Q |
213 |
gaacgatacgaacgataccaaatcgagcaaattctccagctcgatctcgaagaattgcaggtagaagaagtcgacgttttccacgattcttccgacgatg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
213833 |
gaacgatacgaacgataccaaatcgagcaaattctccagctcgatctcgaagaattgcaggtagaagaagtcgacgttttccacgattcttccgacgatg |
213734 |
T |
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| Q |
313 |
acaacaacaacaacaatcacgctgatcctatgtaattttccctctttca |
361 |
Q |
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| T |
213733 |
acaacaacaacaacaatcacgctaatcctatgtaattttccctctttca |
213685 |
T |
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