View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8511_low_44 (Length: 370)

Name: NF8511_low_44
Description: NF8511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8511_low_44
NF8511_low_44
[»] chr3 (15 HSPs)
chr3 (14-359)||(6527156-6527501)
chr3 (14-359)||(6848737-6849082)
chr3 (173-283)||(6558582-6558691)
chr3 (108-220)||(6938784-6938892)
chr3 (147-219)||(6796826-6796898)
chr3 (254-332)||(6938661-6938742)
chr3 (235-336)||(6796932-6797033)
chr3 (157-243)||(6800093-6800178)
chr3 (227-332)||(6789191-6789299)
chr3 (57-110)||(6558494-6558547)
chr3 (165-199)||(8593966-8594000)
chr3 (108-157)||(6550000-6550049)
chr3 (239-280)||(7745471-7745512)
chr3 (245-293)||(8451720-8451767)
chr3 (238-274)||(8594045-8594081)
[»] scaffold0425 (1 HSPs)
scaffold0425 (14-359)||(11860-12187)
[»] chr1 (1 HSPs)
chr1 (245-283)||(7982062-7982100)


Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 14 - 359
Target Start/End: Original strand, 6527156 - 6527501
Alignment:
Q  14 caccactccaaggaaattaggagcatcagtacaaagttaaccaactccaagtggaataaacatgtgtttcagacgaagaatatcattgttgagatgtgat 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6527156 caccactccaaggaaattaggagcatcagtacaaagttaaccaactccaagtggaataaacatgtgtttcagacgaagaatatcattgttgagatgtgat 6527255  T
Q  114 gtcaagactcaggcatcgacttcaacatcttactctttgtatgtccttcctagttcatacaccggaagttgacttgtcaatttagtgaaattcaataaaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6527256 gtcaagactcaggcatcgacttcaacatcttactctttgtatgtccttcctagttcatacaccggaagttgacttgtcaatttagtgaaattcaataaaa 6527355  T
Q  214 cactacttttcattgcagtacttctgattgtaattcattactttttctcagtttgtgaataagtttatctttctgcatcattagaaggttcttttgtgct 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6527356 cactacttttcattgcagtacttctgattgtaattcattactttttctcagtttgtgaataagtttatctttctgcatcattagaaggttcttctgtgct 6527455  T
Q  314 caaaaagccacaacagttcgttaagcatatgttaactccattgtct 359  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  6527456 caaaaagccacaacagttcgttaagcatatgttaactccattgtct 6527501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 14 - 359
Target Start/End: Original strand, 6848737 - 6849082
Alignment:
Q  14 caccactccaaggaaattaggagcatcagtacaaagttaaccaactccaagtggaataaacatgtgtttcagacgaagaatatcattgttgagatgtgat 113  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||    
T  6848737 caccactccaaggaaactaggagcatcagtacaaagttaaccaactccaagtggaataaacatgtgtttcagacagagaatattattgttgagatgtgat 6848836  T
Q  114 gtcaagactcaggcatcgacttcaacatcttactctttgtatgtccttcctagttcatacaccggaagttgacttgtcaatttagtgaaattcaataaaa 213  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6848837 gtcaagactcaggcatccacttcaacatcttactctttgtatgtccttcctagttcatacaccggaagttgacttgtcaatttagtgaaattcaataaaa 6848936  T
Q  214 cactacttttcattgcagtacttctgattgtaattcattactttttctcagtttgtgaataagtttatctttctgcatcattagaaggttcttttgtgct 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6848937 cactacttttcattgcagtacttctgattgtaattcattactttttctcagtttgtgaataagtttatctttctgcatcattagaaggttcttctgtgct 6849036  T
Q  314 caaaaagccacaacagttcgttaagcatatgttaactccattgtct 359  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  6849037 caaaaagccacaacagttcgttaagcatatgttaactccattgtct 6849082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 173 - 283
Target Start/End: Original strand, 6558582 - 6558691
Alignment:
Q  173 caccggaagttgacttgtcaatttagtgaaattcaataaaacactacttttcattgcagtacttctgattgtaattcattactttttctcagtttgtgaa 272  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||    
T  6558582 caccagaagttgacttgtcaatttagtgaaattcaataaaactctacttt-cattgctgtacttctgattgtaattcaatactttttctcagtttgtgaa 6558680  T
Q  273 taagtttatct 283  Q
    || ||||||||    
T  6558681 taggtttatct 6558691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 108 - 220
Target Start/End: Complemental strand, 6938892 - 6938784
Alignment:
Q  108 tgtgatgtcaagactcaggcatcgacttcaacatcttactctttgtatgtccttcctagttcatacaccggaagttgacttgtcaatttagtgaaattca 207  Q
    |||||||||| |||||||||| | |||||||| |||||||||||||||||||||| ||||||||||||||||| | |||||||||||||    |||||||    
T  6938892 tgtgatgtcaggactcaggcagctacttcaacttcttactctttgtatgtccttcgtagttcatacaccggaattcgacttgtcaattt----aaattca 6938797  T
Q  208 ataaaacactact 220  Q
    |||||||||||||    
T  6938796 ataaaacactact 6938784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 147 - 219
Target Start/End: Original strand, 6796826 - 6796898
Alignment:
Q  147 tctttgtatgtccttcctagttcatacaccggaagttgacttgtcaatttagtgaaattcaataaaacactac 219  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  6796826 tctttgtatgttcttcctagttcatacaccggaagttgacgtgtcagtttagtgaaattcaataaaacactac 6796898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 254 - 332
Target Start/End: Complemental strand, 6938742 - 6938661
Alignment:
Q  254 ctttttctcagtttgtgaataagtttatctttctgcatcattagaaggttcttttgtgc---tcaaaaagccacaacagttc 332  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||||||  |||||   ||||||||||||||||||||    
T  6938742 ctttttctcagtttgtgaataagtttatctatctgcataattagaaggttctgctgtgctgatcaaaaagccacaacagttc 6938661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 235 - 336
Target Start/End: Original strand, 6796932 - 6797033
Alignment:
Q  235 ttctgattgtaattcattactttttctcagtttgtgaataagtttatctttctgcatcattagaaggttcttttgtgctcaaaaagccacaacagttcgt 334  Q
    ||||| ||| || ||||| ||||||||||||||||||||||| |||||| ||||||| ||| |||||||||  |||||||||||||  | ||||||||||    
T  6796932 ttctggttggaaatcatttctttttctcagtttgtgaataagcttatctatctgcataattcgaaggttctgctgtgctcaaaaagaaataacagttcgt 6797031  T
Q  335 ta 336  Q
    ||    
T  6797032 ta 6797033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 157 - 243
Target Start/End: Original strand, 6800093 - 6800178
Alignment:
Q  157 tccttcctagttcatacaccggaagttgacttgtcaatttagtgaaattcaataaaacactacttttcattgcagtacttctgattg 243  Q
    |||||||||||||||| || |||| |||||||| |||||||| |||||||||||||||||||  |||||||||| |||| |||||||    
T  6800093 tccttcctagttcatagactggaaattgacttgccaatttagggaaattcaataaaacacta-atttcattgcaatactactgattg 6800178  T

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Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 227 - 332
Target Start/End: Original strand, 6789191 - 6789299
Alignment:
Q  227 tgcagtacttctgattgtaattcattactttttctcagtttgtgaataagtttatctttctgcatcattagaaggttcttttgtgc---tcaaaaagcca 323  Q
    |||||||||||||||| |||||||||| ||| ||||||||||||||||  ||||||| | |  |||| |||| ||||||  |||||   |||||||||||    
T  6789191 tgcagtacttctgattttaattcattaatttctctcagtttgtgaatatttttatctatttatatcactagagggttctgctgtgctgatcaaaaagcca 6789290  T
Q  324 caacagttc 332  Q
    |||||||||    
T  6789291 caacagttc 6789299  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 6558494 - 6558547
Alignment:
Q  57 actccaagtggaataaacatgtgtttcagacgaagaatatcattgttgagatgt 110  Q
    ||||||||||||||||| |||||||||||||  ||||||||||||| |||||||    
T  6558494 actccaagtggaataaatatgtgtttcagacagagaatatcattgtagagatgt 6558547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 199
Target Start/End: Original strand, 8593966 - 8594000
Alignment:
Q  165 agttcatacaccggaagttgacttgtcaatttagt 199  Q
    ||||||||||| |||||||||||||||||||||||    
T  8593966 agttcatacactggaagttgacttgtcaatttagt 8594000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 6550000 - 6550049
Alignment:
Q  108 tgtgatgtcaagactcaggcatcgacttcaacatcttactctttgtatgt 157  Q
    |||||||||| |||||||||||| |||||||  ||| |||||||||||||    
T  6550000 tgtgatgtcaggactcaggcatccacttcaaagtctgactctttgtatgt 6550049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 280
Target Start/End: Complemental strand, 7745512 - 7745471
Alignment:
Q  239 gattgtaattcattactttttctcagtttgtgaataagttta 280  Q
    ||||| |||||||||||||||| ||||||||||||| |||||    
T  7745512 gattgaaattcattactttttcacagtttgtgaataggttta 7745471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 8451767 - 8451720
Alignment:
Q  245 aattcattactttttctcagtttgtgaataagtttatctttctgcatca 293  Q
    |||||||||||||| ||||||||||||||| || ||||| |||||||||    
T  8451767 aattcattactttt-ctcagtttgtgaataggtctatctatctgcatca 8451720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 274
Target Start/End: Original strand, 8594045 - 8594081
Alignment:
Q  238 tgattgtaattcattactttttctcagtttgtgaata 274  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  8594045 tgattgaaattcattattttttctcagtttgtgaata 8594081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 14 - 359
Target Start/End: Original strand, 11860 - 12187
Alignment:
Q  14 caccactccaaggaaattaggagcatcagtacaaagttaaccaactccaagtggaataaacatgtgtttcagacgaagaatatcattgttgagatgtgat 113  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  11860 caccactccaaggaaactaggagcatcagtacaaagttaaccaactccaagtggaataaacatgtgtttcagacagagaatatcattgttgagatgtgat 11959  T
Q  114 gtcaagactcaggcatcgacttcaacatcttactctttgtatgtccttcctagttcatacaccggaagttgacttgtcaatttagtgaaattcaataaaa 213  Q
    ||| ||||  ||           || |||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11960 gtc-agacgaag-----------aatatc------tttgtatgtccttcctagttcatacaccggaagttgacttgtcaatttagtgaaattcaataaaa 12041  T
Q  214 cactacttttcattgcagtacttctgattgtaattcattactttttctcagtttgtgaataagtttatctttctgcatcattagaaggttcttttgtgct 313  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12042 cactactattcattgcagtacttctgattgtaattcattactttttctcagtttgtgaataagtttatctttctgcatcattagaaggttcttctgtgct 12141  T
Q  314 caaaaagccacaacagttcgttaagcatatgttaactccattgtct 359  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  12142 caaaaagccacaacagttcgttaagcatatgttaactccattgtct 12187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 7982062 - 7982100
Alignment:
Q  245 aattcattactttttctcagtttgtgaataagtttatct 283  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  7982062 aattcattactttttctcagtttgtgaatatgtttatct 7982100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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