View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8511_low_48 (Length: 360)
Name: NF8511_low_48
Description: NF8511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8511_low_48 |
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| [»] chr4 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 45534493 - 45534852
Alignment:
| Q |
1 |
tcaaggatctggataattgcaagagatgaactttgaaggacaagcacacatcatggtgctttgaacttccgagcatcgtttttaagggattttacaagaa |
100 |
Q |
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| T |
45534493 |
tcaaggatttggataattgcaagagatgaactttgaaggacaagcacacatcatggtgctttgaacttccgagcatcgtttttaagggattttacaagaa |
45534592 |
T |
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| Q |
101 |
acccaaatgaaaactcttgtctgagactctgcaaatctgttctaatataccttccattgctgctaattgcttttgacattgaatttctcctatgaatcgt |
200 |
Q |
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| T |
45534593 |
acccaaatgaaaactcttgtctgagactttgcaaatctgttctaatatacattccattgctactaattgtttttgacattgaatttctcctatgaatcgt |
45534692 |
T |
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| Q |
201 |
ttcaataaatgtctaattttaatgctcaaactcttagtggggaggtgtggaattgaaacacgaccataaattgagaaaatgaggtgtggatgtttgggat |
300 |
Q |
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| T |
45534693 |
ttcaataaatgtctaattttaatgctcaaactcttagtggggaggtgtggaattgaaacacaacaataaattgagaaaatgaggtgtggatgtttgtgat |
45534792 |
T |
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| Q |
301 |
ttaatttggggatcagggggagctatggggagaggaagagacggtggtaggccatgatac |
360 |
Q |
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| T |
45534793 |
ttaatttggggatcagagggagctatggggagaggaagagacggtggcaggccatgatac |
45534852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 31694612 - 31694969
Alignment:
| Q |
1 |
tcaaggatctggataattgcaagagatgaactttgaaggacaagcacacatcatggtgctttgaacttccgagcatcgtttttaagggattttacaagaa |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
31694612 |
tcaaggatctggataattacaagagatgaactttgaaggacaagcacacatcatggtgctttgaacttgcgagcatcgtttttaagggattttacaagaa |
31694711 |
T |
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| Q |
101 |
acccaaatgaaaactcttgtctgagactctgcaaatctgttctaatataccttccattgctgctaattgcttttgacattgaatttctcctatgaatcgt |
200 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
31694712 |
acccaaatgaaaactcttgtctgagactttgcaaatctgttctaatataccttccattgctgctaattgcttttgacattgaatttctcatatgaatcgt |
31694811 |
T |
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| Q |
201 |
ttcaataaatgtctaattttaatgctcaaactcttagtggggaggtgtggaattgaaacacgaccataaattgagaaaatgaggtgtggatgtttgggat |
300 |
Q |
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| T |
31694812 |
ttcaataaatgcctaattttaatactcaaactcttagtggggaggtgtggaattgaaacacgaccataaattgagaaaatgaggtgtggatgtttgggat |
31694911 |
T |
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| Q |
301 |
ttaatttggggatcagggggagctatg--gggagaggaagagacggtggtaggccatgatac |
360 |
Q |
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||||||||| ||||| |||||||| | ||||||||||||||||||||||||||||||| |
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| T |
31694912 |
ttaatttggcgatca----gagctatggagagagaggaagagacggtggtaggccatgatac |
31694969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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