View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8511_low_49 (Length: 359)
Name: NF8511_low_49
Description: NF8511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8511_low_49 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 7 - 359
Target Start/End: Original strand, 50463658 - 50464013
Alignment:
| Q |
7 |
tttggtgtttctatattaatgttgtctgtttggtcaaaaaacacagaattaaccgttttgaatatgtgatcatcagcagcagaagcagaagcagcaccaa |
106 |
Q |
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| T |
50463658 |
tttggtgtttctatattaatgttgtctgtttggtcaaaaaacacagaattaaccgttttgaatatgtgatcatcagcagcagaagtagaagcagcaccaa |
50463757 |
T |
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| Q |
107 |
ctcgaaaagaaagagtttttggatgggcacaagagggtaagaattgccatggatgttgttttctttgtgaaatttctttggttttgaaaagagaaggtag |
206 |
Q |
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| T |
50463758 |
ctcgaaaagaaagagtttttggatggccacaagagggtaagaattgccatggatgttgttttctttgtgaaatttctttggttttgaaaagagaaggtag |
50463857 |
T |
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| Q |
207 |
tttcaaatttttctttcccatattgtttgtgaagagagggtgggttctatga---gttgttgtgttaggagagttttcgtgtttgtaataaatttgatga |
303 |
Q |
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| T |
50463858 |
tttcaaatttttctttcccatattgtttgtgaagagagggtgggttctatgagttgttgttgtgttaggagagtattcgtgtttgtaataaatttgatga |
50463957 |
T |
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| Q |
304 |
gaaatgagttatttaaagcacaggattgtgatatgaagcaaaagaatatgacaagg |
359 |
Q |
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| T |
50463958 |
gaaatgagttatttaaagcacaggattgtgatatgaagcaaaagaatatgacaagg |
50464013 |
T |
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