View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8511_low_5 (Length: 618)

Name: NF8511_low_5
Description: NF8511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8511_low_5
NF8511_low_5
[»] chr4 (12 HSPs)
chr4 (374-599)||(11675346-11675572)
chr4 (374-599)||(11683625-11683851)
chr4 (1-282)||(11675685-11675970)
chr4 (1-282)||(11683964-11684249)
chr4 (1-101)||(11797807-11797907)
chr4 (1-91)||(11701773-11701863)
chr4 (1-83)||(11695984-11696066)
chr4 (344-376)||(11675591-11675623)
chr4 (344-376)||(11683870-11683902)
chr4 (379-440)||(44137422-44137483)
chr4 (379-423)||(22886689-22886733)
chr4 (379-423)||(22938353-22938397)
[»] scaffold0294 (1 HSPs)
scaffold0294 (1-91)||(16418-16508)
[»] chr5 (1 HSPs)
chr5 (148-181)||(18167394-18167427)


Alignment Details
Target: chr4 (Bit Score: 183; Significance: 1e-98; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 374 - 599
Target Start/End: Complemental strand, 11675572 - 11675346
Alignment:
Q  374 cctcaactctactaatatttcaaaatagtatctatatttgtcaaacgtttctcagttaagtatctcagttaccatgcatccgtcatgtcatgtgacagag 473  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  11675572 cctcaactctactaatatttcaaaacagtatctatatttgtcaaacgtttctcagttaagtctctcagttaccatgcatccgtcatgtcatgtgacagag 11675473  T
Q  474 actagattgaaatactatagagtcggagactaatttaaaagtagcttccagagacatgatcaatttggtggtttac-ccgtaagaaaatcaaaaacacat 572  Q
    | |||||||||||||||||||||||||||||||||||||||||  ||  ||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  11675472 attagattgaaatactatagagtcggagactaatttaaaagtaatttatagagacatgatcaatttggtggtttactcagtaagaaaatcaaaaacacat 11675373  T
Q  573 tctcacttacattctaattgtaatgtt 599  Q
    ||||||||||||| |||||||||||||    
T  11675372 tctcacttacattgtaattgtaatgtt 11675346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 374 - 599
Target Start/End: Complemental strand, 11683851 - 11683625
Alignment:
Q  374 cctcaactctactaatatttcaaaatagtatctatatttgtcaaacgtttctcagttaagtatctcagttaccatgcatccgtcatgtcatgtgacagag 473  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  11683851 cctcaactctactaatatttcaaaacagtatctatatttgtcaaacgtttctcagttaagtctctcagttaccatgcatccgtcatgtcatgtgacagag 11683752  T
Q  474 actagattgaaatactatagagtcggagactaatttaaaagtagcttccagagacatgatcaatttggtggtttac-ccgtaagaaaatcaaaaacacat 572  Q
    | |||||||||||||||||||||||||||||||||||||||||  ||  ||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  11683751 attagattgaaatactatagagtcggagactaatttaaaagtaatttatagagacatgatcaatttggtggtttactcagtaagaaaatcaaaaacacat 11683652  T
Q  573 tctcacttacattctaattgtaatgtt 599  Q
    ||||||||||||| |||||||||||||    
T  11683651 tctcacttacattgtaattgtaatgtt 11683625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 11675970 - 11675685
Alignment:
Q  1 tatgatatcaaattcccttgaatcccataatacgataccctctctgcaacttccacacctatacaaaacattcataactcatttcaattctaatt--aca 98  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  11675970 tatgatatcaagttcccttgaatcccataatatgataccctctctgccacttccacacctatacaaaacattcataactcatttcaattctaatatcaca 11675871  T
Q  99 tttnnnnnnnnnnnnnnnn-taaacatgtcctcgctcctgtcttaaattaaagaaatagtttggtcaacaaaaattgacgtattcagttcaaaatttata 197  Q
    |||                 | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  11675870 tttaaaaaaaaataaaaaaattaacatggcctcgctcctgtcttaaattaaagaaatagtttggtcaacaaaaattgacatattcagttcaaaatttata 11675771  T
Q  198 cttaatccaaattcatcaacttttgtcaatccaaatatctgctacatctacg--agagttaatgagtaaaacagattaatttaagcc 282  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||  ||||||||||||||||||| |||||||||||||    
T  11675770 cttaatccaaattcatcaacttttgtcaacccaaatacctgctacatctacgagagagttaatgagtaaaaca-attaatttaagcc 11675685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 11684249 - 11683964
Alignment:
Q  1 tatgatatcaaattcccttgaatcccataatacgataccctctctgcaacttccacacctatacaaaacattcataactcatttcaattctaatt--aca 98  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  11684249 tatgatatcaagttcccttgaatcccataatatgataccctctctgccacttccacacctatacaaaacattcataactcatttcaattctaatatcaca 11684150  T
Q  99 tttnnnnnnnnnnnnnnnn-taaacatgtcctcgctcctgtcttaaattaaagaaatagtttggtcaacaaaaattgacgtattcagttcaaaatttata 197  Q
    |||                 | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  11684149 tttaaaaaaaaataaaaaaattaacatggcctcgctcctgtcttaaattaaagaaatagtttggtcaacaaaaattgacatattcagttcaaaatttata 11684050  T
Q  198 cttaatccaaattcatcaacttttgtcaatccaaatatctgctacatctacg--agagttaatgagtaaaacagattaatttaagcc 282  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||  ||||||||||||||||||| |||||||||||||    
T  11684049 cttaatccaaattcatcaacttttgtcaacccaaatacctgctacatctacgagagagttaatgagtaaaaca-attaatttaagcc 11683964  T

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Target: chr4; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 11797907 - 11797807
Alignment:
Q  1 tatgatatcaaattcccttgaatcccataatacgataccctctctgcaacttccacacctatacaaaacattcataactcatttcaattctaattacatt 100  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||| ||| ||||||||||| ||||||||||||| ||| ||||    
T  11797907 tatgatatcaaattcccttgaattccataatatgataccctctctgccacttccacacctaaacataacattcataattcatttcaattctcattgcatt 11797808  T
Q  101 t 101  Q
    |    
T  11797807 t 11797807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 11701863 - 11701773
Alignment:
Q  1 tatgatatcaaattcccttgaatcccataatacgataccctctctgcaacttccacacctatacaaaacattcataactcatttcaattct 91  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||| ||| |||||||||||  ||||| ||||||    
T  11701863 tatgatatcaaattcccttgaattccataatatgataccctctctgccacttccacacctaaacataacattcataatccatttaaattct 11701773  T

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Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 11696066 - 11695984
Alignment:
Q  1 tatgatatcaaattcccttgaatcccataatacgataccctctctgcaacttccacacctatacaaaacattcataactcatt 83  Q
    ||||||||||||||||||||||| |||||||| ||| |||||||||| | ||||||||||| | | |||||||| || |||||    
T  11696066 tatgatatcaaattcccttgaattccataatatgatgccctctctgccatttccacacctaaatataacattcacaattcatt 11695984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 344 - 376
Target Start/End: Complemental strand, 11675623 - 11675591
Alignment:
Q  344 ctaccaaattggtccttatctctctgtaagcct 376  Q
    |||||||||||||||||||||||||||||||||    
T  11675623 ctaccaaattggtccttatctctctgtaagcct 11675591  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 344 - 376
Target Start/End: Complemental strand, 11683902 - 11683870
Alignment:
Q  344 ctaccaaattggtccttatctctctgtaagcct 376  Q
    |||||||||||||||||||||||||||||||||    
T  11683902 ctaccaaattggtccttatctctctgtaagcct 11683870  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 440
Target Start/End: Original strand, 44137422 - 44137483
Alignment:
Q  379 actctactaatatttcaaaatagtatctatatttgtcaaacgtttctcagttaagtatctca 440  Q
    |||||| ||||||||||||||||||||| | |||||||||  ||| ||| |||||| |||||    
T  44137422 actctattaatatttcaaaatagtatctgtctttgtcaaaaatttatcaattaagtctctca 44137483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 379 - 423
Target Start/End: Complemental strand, 22886733 - 22886689
Alignment:
Q  379 actctactaatatttcaaaatagtatctatatttgtcaaacgttt 423  Q
    |||||| ||||| ||||||||||| ||||| ||||||||||||||    
T  22886733 actctattaataattcaaaatagtttctatctttgtcaaacgttt 22886689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 379 - 423
Target Start/End: Complemental strand, 22938397 - 22938353
Alignment:
Q  379 actctactaatatttcaaaatagtatctatatttgtcaaacgttt 423  Q
    |||||| ||||| ||||||||||| ||||| ||||||||||||||    
T  22938397 actctattaataattcaaaatagtttctatctttgtcaaacgttt 22938353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 16508 - 16418
Alignment:
Q  1 tatgatatcaaattcccttgaatcccataatacgataccctctctgcaacttccacacctatacaaaacattcataactcatttcaattct 91  Q
    ||||||||||| || || | |||||||  ||| |||| ||||||||| ||||||||||||| ||| |||||||||||  ||||||||||||    
T  16508 tatgatatcaagtttcccttaatcccaatatatgatatcctctctgctacttccacacctaaacataacattcataatccatttcaattct 16418  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 181
Target Start/End: Complemental strand, 18167427 - 18167394
Alignment:
Q  148 aagaaatagtttggtcaacaaaaattgacgtatt 181  Q
    |||||| |||||||||||||||||||||||||||    
T  18167427 aagaaaaagtttggtcaacaaaaattgacgtatt 18167394  T

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