View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8511_low_50 (Length: 355)
Name: NF8511_low_50
Description: NF8511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8511_low_50 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 45974171 - 45973835
Alignment:
| Q |
1 |
agagaaaacgtgaatgtgatggtgatgtaatgtggttggttgtgaacttgtgacattgtgcactgttgatttaacttgtaatgggttggagagttgcaaa |
100 |
Q |
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| T |
45974171 |
agagaaaacgtgaatgtgatggtgatgtaatgtggttggttgtgaacttgtgacattgtgcactgttgatttaacttgtaatgggttggagagttgcaaa |
45974072 |
T |
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| Q |
101 |
atagtcaatgccaatggtggtggtggtgggaaagaaaacacaagagtactttcttatcaactaaaattcggattgtgattcactgcattcaataaaataa |
200 |
Q |
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| T |
45974071 |
atagtcaatgccagtggtggtggtggtgggaaagaaaacacaagagtactttcttatcaactaaaattcggattgtgattcactgcattcaataaaataa |
45973972 |
T |
|
| Q |
201 |
cacagtcacacacttaaacgaaacataaccatctgattaaa----------atatttgccttctctaatttattccacgttaaacccactacacagaata |
290 |
Q |
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| T |
45973971 |
cacagtcacacacttaaacgaaacataaccatctgattaaaataacggtatatatttgccttctctaatttattccacgttaaacccactgcacagaata |
45973872 |
T |
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| Q |
291 |
tttgcctgctcaaacacgttcttctgtaaaaatttggaatctcaaa |
336 |
Q |
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| T |
45973871 |
tt---------aaacacgttcttctgtaaaaatttggaatcccaaa |
45973835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 237
Target Start/End: Original strand, 10946384 - 10946447
Alignment:
| Q |
174 |
tgtgattcactgcattcaataaaataacacagtcacacacttaaacgaaacataaccatctgat |
237 |
Q |
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| T |
10946384 |
tgtgattcactgcagtcattaaaatgacgcagtcacacagttaaacaatacaaaaccatctgat |
10946447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 237
Target Start/End: Original strand, 29175841 - 29175904
Alignment:
| Q |
174 |
tgtgattcactgcattcaataaaataacacagtcacacacttaaacgaaacataaccatctgat |
237 |
Q |
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||||| |||||||| ||| |||||| ||||||||||||| | |||| ||||||||||||||||| |
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| T |
29175841 |
tgtgactcactgcagtcagtaaaatgacacagtcacacattcaaacaaaacataaccatctgat |
29175904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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