View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8511_low_51 (Length: 355)
Name: NF8511_low_51
Description: NF8511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8511_low_51 |
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| [»] chr1 (7 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 26 - 355
Target Start/End: Original strand, 15755572 - 15755901
Alignment:
| Q |
26 |
gtcaagattatgcaaaagttgaccaagaatcctagaggtatttcacttcttcaaagaatgagcatagggttcataatccatatagtgataatgacagttg |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
15755572 |
gtcaagattatgcaaaagttgaccaagaatcctagaggtatttcacttcttcaaagaatgagcatagggttcataatccacatagtgataatgacagttg |
15755671 |
T |
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| Q |
126 |
catccatgattgaaagacatagacttagtgtggccaaaaaccatgaagttccattgagcatattcattttgctaccacaatttatacttatgggagtggc |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15755672 |
catccatgattgaaagacatagacttagtgtggccaaaaaacatgaagttccattaagcatattcattttgctaccacaatttatacttatgggagtggc |
15755771 |
T |
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| Q |
226 |
tgaagcacttttagagggtgcaaaaatggagtttttctatgatcaagcaccagaaagcatgaagagtcttggaacatcatactcattaactactactgga |
325 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
15755772 |
tgaagcacttttagagggtgcaaaaatggagtttttctatgatcaagcaccagaaagcatgaagagtcttggaacatcatattccttaactactactgga |
15755871 |
T |
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| Q |
326 |
attggtagttttctcagcacctttcttctc |
355 |
Q |
| |
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|||||||||||||||||||| ||||||||| |
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| T |
15755872 |
attggtagttttctcagcacttttcttctc |
15755901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 26 - 355
Target Start/End: Original strand, 15766441 - 15766770
Alignment:
| Q |
26 |
gtcaagattatgcaaaagttgaccaagaatcctagaggtatttcacttcttcaaagaatgagcatagggttcataatccatatagtgataatgacagttg |
125 |
Q |
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||||||||||||||||||||||| |||||||||||||| ||| |||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
15766441 |
gtcaagattatgcaaaagttgactaagaatcctagagggattacactccttcaaagaatgagcatagggttcataatccacatagtgataatgatagttg |
15766540 |
T |
|
| Q |
126 |
catccatgattgaaagacatagacttagtgtggccaaaaaccatgaagttccattgagcatattcattttgctaccacaatttatacttatgggagtggc |
225 |
Q |
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||| ||||||||||||||| ||||||||||||| |||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
15766541 |
cattcatgattgaaagacaaagacttagtgtggtcaaaaaacatgaagttccattaagcatattcattttgcttccacaatttatacttatgggagtggc |
15766640 |
T |
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| Q |
226 |
tgaagcacttttagagggtgcaaaaatggagtttttctatgatcaagcaccagaaagcatgaagagtcttggaacatcatactcattaactactactgga |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
15766641 |
tgaagcacttttagagggtgcaaaaatggagtttttctatgatcaagcaccagaaagcatgaagagccttggaacatcatactcattaactactactgga |
15766740 |
T |
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| Q |
326 |
attggtagttttctcagcacctttcttctc |
355 |
Q |
| |
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|||||||||||||||||||| ||||||||| |
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| T |
15766741 |
attggtagttttctcagcacttttcttctc |
15766770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 20 - 355
Target Start/End: Original strand, 15779550 - 15779906
Alignment:
| Q |
20 |
ttcttggtcaagattatgcaaaagttgaccaagaatcctagaggtatttcacttcttcaaagaatgagcatagggttcataatccatatagtgataatga |
119 |
Q |
| |
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||||| |||||||||||||| | |||||| ||||| |||||||| ||| | ||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
15779550 |
ttctttgtcaagattatgcagaggttgactaagaaccctagagggattactcttcttcaaagaatgagcataggattcataatccatatagtgataatga |
15779649 |
T |
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| Q |
120 |
cagttgcatccatgattgaaagacatagacttagtgtggccaaaaaccatgaagt---------------------tccattgagcatattcattttgct |
198 |
Q |
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|||||||| || ||||||||||||||| |||||||||| | |||| ||| |||||||||||||||||||||| |
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| T |
15779650 |
tagttgcatatttggctgaaagacatagactatttgtggccaaagaacatggagtaattgaaaatggaggacaggttccattgagcatattcattttggc |
15779749 |
T |
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| Q |
199 |
accacaatttatacttatgggagtggctgaagcacttttagagggtgcaaaaatggagtttttctatgatcaagcaccagaaagcatgaagagtcttgga |
298 |
Q |
| |
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||||||||| ||||||||||| | || ||||| || ||||||||||| ||||| |||||||||||||| ||||| ||||||||||||||||| ||||| |
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| T |
15779750 |
tccacaatttgtacttatgggaatagcagaagccctcttagagggtgccaaaattgagtttttctatgaccaagccccagaaagcatgaagagccttggg |
15779849 |
T |
|
| Q |
299 |
acatcatactcattaactactactggaattggtagttttctcagcacctttcttctc |
355 |
Q |
| |
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| || || || ||||||||||| || ||||||||||| || ||||| ||||||||| |
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| T |
15779850 |
agttcgtattccttaactactacgggcattggtagtttccttagcacttttcttctc |
15779906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 173 - 297
Target Start/End: Original strand, 15737625 - 15737749
Alignment:
| Q |
173 |
gttccattgagcatattcattttgctaccacaatttatacttatgggagtggctgaagcacttttagagggtgcaaaaatggagtttttctatgatcaag |
272 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| | |||||| ||| ||||| ||||| ||||||||||||| |
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| T |
15737625 |
gttccattgagcatattcattttgcttccacaatttatacttatgggaacagctgaagcattcatagaggttgctaaaattgagttcttctatgatcaag |
15737724 |
T |
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| Q |
273 |
caccagaaagcatgaagagtcttgg |
297 |
Q |
| |
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| ||||||||||||||||||||||| |
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| T |
15737725 |
ctccagaaagcatgaagagtcttgg |
15737749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 172 - 291
Target Start/End: Original strand, 15730021 - 15730140
Alignment:
| Q |
172 |
agttccattgagcatattcattttgctaccacaatttatacttatgggagtggctgaagcacttttagagggtgcaaaaatggagtttttctatgatcaa |
271 |
Q |
| |
|
|||||||||||||||||||||||| || || |||||| ||||||||||| ||||| ||| ||||||||| ||| ||||| ||||| |||||||||||| |
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| T |
15730021 |
agttccattgagcatattcattttactccctcaatttttacttatgggaacagctgatgcatttttagaggttgctaaaattgagttcttctatgatcaa |
15730120 |
T |
|
| Q |
272 |
gcaccagaaagcatgaagag |
291 |
Q |
| |
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|| ||||||||||||||||| |
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| T |
15730121 |
gctccagaaagcatgaagag |
15730140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 171 - 300
Target Start/End: Complemental strand, 33411715 - 33411586
Alignment:
| Q |
171 |
aagttccattgagcatattcattttgctaccacaatttatacttatgggagtggctgaagcacttttagagggtgcaaaaatggagtttttctatgatca |
270 |
Q |
| |
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||||||| ||||| || ||||||||||| || || ||||||||||||||| ||||| ||| || |||||| ||| ||||| ||||||||||||||||| |
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| T |
33411715 |
aagttcctttgagtattttcattttgcttcctcagtttatacttatgggaacagctgatgcatttctagaggttgcgaaaatcgagtttttctatgatca |
33411616 |
T |
|
| Q |
271 |
agcaccagaaagcatgaagagtcttggaac |
300 |
Q |
| |
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||| |||||||||||||||||| ||||||| |
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| T |
33411615 |
agctccagaaagcatgaagagtattggaac |
33411586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 163
Target Start/End: Original strand, 15737451 - 15737594
Alignment:
| Q |
20 |
ttcttggtcaagattatgcaaaagttgaccaagaatcctagaggtatttcacttcttcaaagaatgagcatagggttcataatccatatagtgataatga |
119 |
Q |
| |
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||||| ||||||||||||||||| | ||| || || |||||||| ||| | || |||||||| ||| ||||||| | ||||| |||||| |||| ||| |
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| T |
15737451 |
ttctttgtcaagattatgcaaaaatggactaaaaaccctagaggaattactctacttcaaaggatgggcataggcatgataattcatataatgattatgg |
15737550 |
T |
|
| Q |
120 |
cagttgcatccatgattgaaagacatagacttagtgtggccaaa |
163 |
Q |
| |
|
||||||| | | | ||||||| |||| |||||||| |||||| |
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| T |
15737551 |
tagttgcaactttcactgaaagatataggcttagtgtagccaaa |
15737594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 304
Target Start/End: Complemental strand, 39256639 - 39256586
Alignment:
| Q |
251 |
atggagtttttctatgatcaagcaccagaaagcatgaagagtcttggaacatca |
304 |
Q |
| |
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||||||||||| |||||||||||||||||| ||||||| ||||||||| ||||| |
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| T |
39256639 |
atggagtttttttatgatcaagcaccagaaggcatgaaaagtcttggagcatca |
39256586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 39193647 - 39193595
Alignment:
| Q |
254 |
gagtttttctatgatcaagcaccagaaagcatgaagagtcttggaacatcata |
306 |
Q |
| |
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||||| ||||||||||||||||||||| ||||||| ||||| ||||||||||| |
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| T |
39193647 |
gagttcttctatgatcaagcaccagaaggcatgaaaagtctcggaacatcata |
39193595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 39223000 - 39222948
Alignment:
| Q |
254 |
gagtttttctatgatcaagcaccagaaagcatgaagagtcttggaacatcata |
306 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||| ||||| ||||||||||| |
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| T |
39223000 |
gagttcttctatgatcaagcaccagaaggcatgaaaagtctcggaacatcata |
39222948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 301
Target Start/End: Complemental strand, 39238670 - 39238620
Alignment:
| Q |
251 |
atggagtttttctatgatcaagcaccagaaagcatgaagagtcttggaaca |
301 |
Q |
| |
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|||||||| ||||| |||||||| ||||||| |||||||||||| |||||| |
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| T |
39238670 |
atggagttcttctacgatcaagcgccagaaaccatgaagagtctcggaaca |
39238620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 301
Target Start/End: Complemental strand, 39176920 - 39176879
Alignment:
| Q |
260 |
ttctatgatcaagcaccagaaagcatgaagagtcttggaaca |
301 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||| |||||| |
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| T |
39176920 |
ttctatgatcaagcaccagaaggcatgaaaagtctcggaaca |
39176879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 307
Target Start/End: Complemental strand, 39259888 - 39259835
Alignment:
| Q |
254 |
gagtttttctatgatcaagcaccagaaagcatgaagagtcttggaacatcatac |
307 |
Q |
| |
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|||||||| || |||||||| |||||| |||||| |||||||||||||||||| |
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| T |
39259888 |
gagtttttttacgatcaagcgccagaatccatgaaaagtcttggaacatcatac |
39259835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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