View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8511_low_52 (Length: 347)
Name: NF8511_low_52
Description: NF8511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8511_low_52 |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 8 - 326
Target Start/End: Original strand, 35364363 - 35364681
Alignment:
| Q |
8 |
gattatactagtagataagttcaagtcaattcaaacaaaccataaattggtttttcacttaaaaatagaataaagtttattagtcccttcaatccagcaa |
107 |
Q |
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| T |
35364363 |
gattatactagtagataagttcaagtcaattcaaacaaaccataaattggttttacacttaaaaatagaataaagtttattagtcccttcaatccagcaa |
35364462 |
T |
|
| Q |
108 |
gaaattagaacctttgcagcaattgctcgaagatagccagcacgaacagaaccagaagcagtagaccaatctctacctttgtttctggaaatggctcttt |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
35364463 |
gaaattagaacctttgcagcaattgctcgaagatagccagcacgaacagaaccagaagcagtacaccaatctctacctttgtttctggaaatggctcttt |
35364562 |
T |
|
| Q |
208 |
tagcagcatcaacagcaaggtcaacatcttccttagtagcagctggtatatcccctgcatttgtgtcaaccattcatataatgccacaacatagaagtag |
307 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| | ||||||||||||||||||||| |
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| T |
35364563 |
tagcagcatccacagcaaggtcaacatcttccttagtagcagcaggtatatcccctgcatgtgtgtcaaccattcacacaatgccacaacatagaagtag |
35364662 |
T |
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| Q |
308 |
ttattatcatatcatactt |
326 |
Q |
| |
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||||||||||||||||||| |
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| T |
35364663 |
ttattatcatatcatactt |
35364681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 106 - 331
Target Start/End: Complemental strand, 35382618 - 35382393
Alignment:
| Q |
106 |
aagaaattagaacctttgcagcaattgctcgaagatagccagcacgaacagaaccagaagcagtagaccaatctctacctttgtttctggaaatggctct |
205 |
Q |
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|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| || ||||||||||| |
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| T |
35382618 |
aagaaattagaacctttgaagcgattgctcgaagatagccagcacgaacagaaccagaagcagtggaccaatctttacctttgttccttgaaatggctct |
35382519 |
T |
|
| Q |
206 |
tttagcagcatcaacagcaaggtcaacatcttccttagtagcagctggtatatcccctgcatttgtgtcaaccattcatataatgccacaacatagaagt |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35382518 |
tttagcagcatcaacagcaaggtcaacatcttccttagtagcagctggtatatcccctgcatttgtgtcaaccattcatataatgccacaacatagaagt |
35382419 |
T |
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| Q |
306 |
agttattatcatatcatacttgataa |
331 |
Q |
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|||||||||||||||||||||||||| |
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| T |
35382418 |
agttattatcatatcatacttgataa |
35382393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 103
Target Start/End: Complemental strand, 35382672 - 35382637
Alignment:
| Q |
68 |
aaaaatagaataaagtttattagtcccttcaatcca |
103 |
Q |
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||||||||||||||||||||||||||||| |||||| |
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| T |
35382672 |
aaaaatagaataaagtttattagtccctttaatcca |
35382637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 38
Target Start/End: Original strand, 5083207 - 5083235
Alignment:
| Q |
10 |
ttatactagtagataagttcaagtcaatt |
38 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
5083207 |
ttatactagtagataagttcaagtcaatt |
5083235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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