View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8511_low_55 (Length: 342)
Name: NF8511_low_55
Description: NF8511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8511_low_55 |
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Alignment Details
Target: chr8 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 101 - 330
Target Start/End: Complemental strand, 29025259 - 29025034
Alignment:
| Q |
101 |
aactatctattcgatttcgagacacatactatacaccgatattcctaggaataggatgtactcttgtatacttgtacgtacaagaatttaaattaannnn |
200 |
Q |
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| T |
29025259 |
aactatctattcgatttcgagacacatactatacaccgatattcctaggaataggatgtactcttgtatacttgtacgtacaagaacttaaatt----tt |
29025164 |
T |
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| Q |
201 |
nnnnnnnnatttcaaaaatactttaagaaaatacaatattgtacgacaatggcataaacccgatgagatacatatgagatgatatcggatctctagactt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||| ||||||||||| |
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| T |
29025163 |
ttttttttatttcaaaaatactttaagaaaatacaatattgtacgacaatagcataaatcggatgagatacatatgagatgatatcgggtctctagactt |
29025064 |
T |
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| Q |
301 |
ctaacatatataaagtaaaaaagaaggaaa |
330 |
Q |
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||||||| ||||||||||||||||| |||| |
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| T |
29025063 |
ctaacatttataaagtaaaaaagaaagaaa |
29025034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 29025552 - 29025447
Alignment:
| Q |
1 |
caatgaatgatttttcctaggttgaaccaaatgaatttcaagctatattaatagggacattaggtatgatttataaagccagagtacactaaaatgagta |
100 |
Q |
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| T |
29025552 |
caatgaatgatttttcctaggttgcaccaaatgaattccaagctatatgaatagggatattaggtatgatttataaagccagagtacactaaaatgagta |
29025453 |
T |
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| Q |
101 |
aactat |
106 |
Q |
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|||||| |
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| T |
29025452 |
aactat |
29025447 |
T |
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