View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8511_low_56 (Length: 335)
Name: NF8511_low_56
Description: NF8511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8511_low_56 |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 13 - 317
Target Start/End: Complemental strand, 47583309 - 47583005
Alignment:
| Q |
13 |
aagaaacaaacaattttcaaactgccaacttcatgaaactaaatctcaattagatttagaaactaatgctgtattaaattataaaagcccttgacaaata |
112 |
Q |
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| T |
47583309 |
aagaaacaaacaattttcaaactgccaacttcatgaaactaaatctcaattagatttagaaactaatgctgtattaaattataaaagcccttgacaaata |
47583210 |
T |
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| Q |
113 |
caattgtaaaacttggtttttctcaattacaaaagttcaagaaactaagaatgaaataatgagaacatgatagacaatattttaatcaattattggtgtt |
212 |
Q |
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| T |
47583209 |
caattgtaaaacttggtttttctcaattacaaaagttcaagaaactaagaatgaaataatgagaacatgatagacaatattttaatcaattattggtgtt |
47583110 |
T |
|
| Q |
213 |
ttaaagctccgtcacatcaaggaatttcactcctttgagcatagacaaaactaatctttcattcagattttcagcattaacatgttatcagagccatgac |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47583109 |
ttaaagctccgtcacatcaaggaatttcactcctttgagcatagacaaaactaatctttcattcagattttcagcattaacatgttatcagagccatgac |
47583010 |
T |
|
| Q |
313 |
atgac |
317 |
Q |
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||||| |
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| T |
47583009 |
atgac |
47583005 |
T |
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