View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8511_low_59 (Length: 331)

Name: NF8511_low_59
Description: NF8511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8511_low_59
NF8511_low_59
[»] chr5 (4 HSPs)
chr5 (1-310)||(19601913-19602220)
chr5 (112-201)||(43100959-43101043)
chr5 (115-197)||(9622399-9622477)
chr5 (161-206)||(23418901-23418946)
[»] chr4 (5 HSPs)
chr4 (113-206)||(16529826-16529915)
chr4 (115-206)||(12832436-12832523)
chr4 (115-201)||(38476282-38476364)
chr4 (113-206)||(56192210-56192299)
chr4 (158-206)||(3534047-3534095)
[»] chr7 (4 HSPs)
chr7 (151-206)||(965262-965317)
chr7 (151-198)||(35015911-35015958)
chr7 (126-201)||(16706687-16706757)
chr7 (126-201)||(17680923-17680993)
[»] chr6 (4 HSPs)
chr6 (151-206)||(15489406-15489461)
chr6 (113-206)||(32183771-32183860)
chr6 (112-202)||(20969780-20969866)
chr6 (151-206)||(15135052-15135108)
[»] chr1 (5 HSPs)
chr1 (112-206)||(8259482-8259572)
chr1 (113-206)||(15342871-15342959)
chr1 (115-206)||(14624967-14625054)
chr1 (145-202)||(42693518-42693575)
chr1 (117-206)||(48379474-48379558)
[»] chr2 (2 HSPs)
chr2 (106-174)||(9032748-9032812)
chr2 (151-206)||(19494762-19494817)
[»] scaffold1940 (1 HSPs)
scaffold1940 (156-206)||(584-634)
[»] scaffold0001 (1 HSPs)
scaffold0001 (115-206)||(428283-428369)


Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 19601913 - 19602220
Alignment:
Q  1 tacaaaacagattagcactctgacactcaagtcgattagggaaatgtagaaggaaaatgtgtgaaaaatggtgaaaatatgattgtatctagggtgtagc 100  Q
    ||||| |||| |||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| ||    
T  19601913 tacaacacaggttagcactctgacactcaagtcgattagagaaatgttgaaggaaagtgtgtgaaaaatggtgaaaatatgatcgtatctagggtgtggc 19602012  T
Q  101 gcatagcaacaattagaccatctaaaatggtgggtgcgtcacctatttaattagaaccacattaaataggcaccctcaatgcggagtataatatatgggt 200  Q
    ||||| ||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||  |   |||||||||||||| ||    
T  19602013 gcataacaacacttagaccatctacaatggtgggtgcgtcacctatttaattaggaccacattaaatagacaccctccttatagagtataatatatgagt 19602112  T
Q  201 gtctattatgatctcttaactgtccttggaataactaactccgagatatccgacgagatatgctaagggcagttaagagatcatatatatatagatgatt 300  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |||||||    
T  19602113 gtctattatgatctcttaactgcccttggcataactaactccgagatatccgacgagatatgctaagggcagttaagagatc--atatatatggatgatt 19602210  T
Q  301 cacattgtac 310  Q
     |||||||||    
T  19602211 tacattgtac 19602220  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 201
Target Start/End: Complemental strand, 43101043 - 43100959
Alignment:
Q  112 attagaccatctaaaatggtgggtgcgtcacctatttaattagaaccacattaaataggcaccctcaatgcggagtataatatatgggtg 201  Q
    ||||||||||| ||| |||||||||| | |||||||||    | ||||||||||||| ||||||||| || ||||||||| |||||||||    
T  43101043 attagaccatccaaa-tggtgggtgcttaacctattta----gcaccacattaaataagcaccctcattgtggagtataacatatgggtg 43100959  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 197
Target Start/End: Complemental strand, 9622477 - 9622399
Alignment:
Q  115 agaccatctaaaatggtgggtgcgtcacctatttaattagaaccacattaaataggcaccctcaatgcggagtataatatatg 197  Q
    |||||||| | |||||||||||| |||||||||||    | |||||||||||||| ||||| || || ||||||||| |||||    
T  9622477 agaccatccacaatggtgggtgcttcacctattta----gcaccacattaaatagacacccccattgtggagtataacatatg 9622399  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 23418901 - 23418946
Alignment:
Q  161 attaaataggcaccctcaatgcggagtataatatatgggtgtctat 206  Q
    ||||||||||||||| || || ||||||||||||||||||| ||||    
T  23418901 attaaataggcacccccattgtggagtataatatatgggtggctat 23418946  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 113 - 206
Target Start/End: Original strand, 16529826 - 16529915
Alignment:
Q  113 ttagaccatctaaaatggtgggtgcgtcacctatttaattagaaccacattaaataggcaccctcaatgcggagtataatatatgggtgtctat 206  Q
    |||||||||| | |||||||||||| |||||||||||    | |||||||||||||||||||| || || ||||||||||| ||||||| ||||    
T  16529826 ttagaccatccacaatggtgggtgcttcacctattta----gcaccacattaaataggcacccccattgtggagtataatacatgggtggctat 16529915  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 206
Target Start/End: Complemental strand, 12832523 - 12832436
Alignment:
Q  115 agaccatctaaaatggtgggtgcgtcacctatttaattagaaccacattaaataggcaccctcaatgcggagtataatatatgggtgtctat 206  Q
    |||||||||| |||||||||||| ||||||||    |||| |||||||||||| |||||||  | || ||||||||||| ||||||| ||||    
T  12832523 agaccatctacaatggtgggtgcttcacctat----ttagcaccacattaaatcggcacccctattgtggagtataatacatgggtggctat 12832436  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 201
Target Start/End: Complemental strand, 38476364 - 38476282
Alignment:
Q  115 agaccatctaaaatggtgggtgcgtcacctatttaattagaaccacattaaataggcaccctcaatgcggagtataatatatgggtg 201  Q
    |||||||||| |||||||||||| ||||||||    |||| |||||||||||||| ||||| || |  | |||||||||||||||||    
T  38476364 agaccatctataatggtgggtgcttcacctat----ttagcaccacattaaatagacacccccattatgaagtataatatatgggtg 38476282  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 206
Target Start/End: Original strand, 56192210 - 56192299
Alignment:
Q  113 ttagaccatctaaaatggtgggtgcgtcacctatttaattagaaccacattaaataggcaccctcaatgcggagtataatatatgggtgtctat 206  Q
    ||||| |||| | |||||||||||| | ||||||||||     |||||||||||||||||||| |  || |||||| |||||||||||||||||    
T  56192210 ttagatcatccacaatggtgggtgctttacctatttaac----accacattaaataggcacccccgttgtggagtaaaatatatgggtgtctat 56192299  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 3534095 - 3534047
Alignment:
Q  158 cacattaaataggcaccctcaatgcggagtataatatatgggtgtctat 206  Q
    |||||||||||||||||| || || |||| |||||||||||||| ||||    
T  3534095 cacattaaataggcacccccattgtggagaataatatatgggtggctat 3534047  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 206
Target Start/End: Original strand, 965262 - 965317
Alignment:
Q  151 ttagaaccacattaaataggcaccctcaatgcggagtataatatatgggtgtctat 206  Q
    |||| |||||||||||||||||||| || || |||||| |||||||||||||||||    
T  965262 ttagcaccacattaaataggcacccccattgtggagtaaaatatatgggtgtctat 965317  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 151 - 198
Target Start/End: Complemental strand, 35015958 - 35015911
Alignment:
Q  151 ttagaaccacattaaataggcaccctcaatgcggagtataatatatgg 198  Q
    |||| |||| |||||||||||||||||| || ||||||||||||||||    
T  35015958 ttagcaccatattaaataggcaccctcattgtggagtataatatatgg 35015911  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 201
Target Start/End: Complemental strand, 16706757 - 16706687
Alignment:
Q  126 aatggtgggtgcgtcacctatttaattagaaccacattaaataggcaccctcaatgcggagtataatatatgggtg 201  Q
    |||||||||||| |||||||||||    | |||||||||||||||||||| || || ||||||||| |||||||||    
T  16706757 aatggtgggtgcttcacctattta----gcaccacattaaataggcaccc-cattgtggagtataacatatgggtg 16706687  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 201
Target Start/End: Complemental strand, 17680993 - 17680923
Alignment:
Q  126 aatggtgggtgcgtcacctatttaattagaaccacattaaataggcaccctcaatgcggagtataatatatgggtg 201  Q
    |||||||||||| |||||||||||    | |||||||||||||||||||| || || ||||||||| |||||||||    
T  17680993 aatggtgggtgcttcacctattta----gcaccacattaaataggcaccc-cattgtggagtataacatatgggtg 17680923  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 206
Target Start/End: Original strand, 15489406 - 15489461
Alignment:
Q  151 ttagaaccacattaaataggcaccctcaatgcggagtataatatatgggtgtctat 206  Q
    |||| |||||||||||||||||||| || || |||||||||||| |||||||||||    
T  15489406 ttagcaccacattaaataggcacccccattgtggagtataatatttgggtgtctat 15489461  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 206
Target Start/End: Original strand, 32183771 - 32183860
Alignment:
Q  113 ttagaccatctaaaatggtgggtgcgtcacctatttaattagaaccacattaaataggcaccctcaatgcggagtataatatatgggtgtctat 206  Q
    |||||||||| | |||||||||||| ||| |||||||    | | || ||||||||||||||| || || ||||||||||||||||||| ||||    
T  32183771 ttagaccatccacaatggtgggtgcttcatctattta----gcatcatattaaataggcacccccattgtggagtataatatatgggtggctat 32183860  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 202
Target Start/End: Complemental strand, 20969866 - 20969780
Alignment:
Q  112 attagaccatctaaaatggtgggtgcgtcacctatttaattagaaccacattaaataggcaccctcaatgcggagtataatatatgggtgt 202  Q
    ||||||||||| | |||||||||| | ||||||||    |||| |||||||||| ||||||||| || || | ||||||| ||||||||||    
T  20969866 attagaccatccacaatggtgggtacttcacctat----ttagcaccacattaagtaggcacccccattgtgaagtataacatatgggtgt 20969780  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 206
Target Start/End: Complemental strand, 15135108 - 15135052
Alignment:
Q  151 ttagaaccacattaaataggcaccct-caatgcggagtataatatatgggtgtctat 206  Q
    |||| ||||||||||||||||||||| || || ||||||||||| ||||||| ||||    
T  15135108 ttagcaccacattaaataggcaccctccattgtggagtataatacatgggtggctat 15135052  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 112 - 206
Target Start/End: Complemental strand, 8259572 - 8259482
Alignment:
Q  112 attagaccatctaaaatggtgggtgcgtcacctatttaattagaaccacattaaataggcaccctcaatgcggagtataatatatgggtgtctat 206  Q
    ||||||||||||| |||||||||||| ||| |||||||    | | || ||||||||||||||| || || || |||||||||||||||| ||||    
T  8259572 attagaccatctacaatggtgggtgcttcatctattta----gcatcatattaaataggcacccccattgtggggtataatatatgggtggctat 8259482  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 206
Target Start/End: Complemental strand, 15342959 - 15342871
Alignment:
Q  113 ttagaccatctaaaatggtgggtgcgtcacctatttaattagaaccacattaaataggcaccctcaatgcggagtataatatatgggtgtctat 206  Q
    ||||| |||||| |||||||||||| ||||||||    |||| ||||||||||||| |||||| || || ||||||||||| ||||||| ||||    
T  15342959 ttagatcatctacaatggtgggtgcttcacctat----ttagcaccacattaaataagcaccc-cattgtggagtataatacatgggtggctat 15342871  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 206
Target Start/End: Original strand, 14624967 - 14625054
Alignment:
Q  115 agaccatctaaaatggtgggtgcgtcacctatttaattagaaccacattaaataggcaccctcaatgcggagtataatatatgggtgtctat 206  Q
    |||||||||| |||||||||||| ||||||||    |||| ||||||||||| |||||| |  | || |||| |||||||||||||| ||||    
T  14624967 agaccatctacaatggtgggtgcttcacctat----ttagcaccacattaaagaggcactcctattgtggagaataatatatgggtggctat 14625054  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 202
Target Start/End: Complemental strand, 42693575 - 42693518
Alignment:
Q  145 atttaattagaaccacattaaataggcaccctcaatgcggagtataatatatgggtgt 202  Q
    ||||| |||| |||| ||||||||||||||  ||||| ||||||||| ||||||||||    
T  42693575 atttatttagcaccatattaaataggcacctccaatgtggagtataacatatgggtgt 42693518  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 206
Target Start/End: Original strand, 48379474 - 48379558
Alignment:
Q  117 accatctaaaatggtgggtgcgtcacctatttaattagaaccacattaaataggcaccctcaatgcggagtataatatatgggtgtctat 206  Q
    |||||| | |||||||||||| ||||||||    |||| |||||||||||||||||||| || ||  |||||||||| ||||||| ||||    
T  48379474 accatccacaatggtgggtgcttcacctat----ttagcaccacattaaataggcaccc-cattgtagagtataatacatgggtggctat 48379558  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 106 - 174
Target Start/End: Complemental strand, 9032812 - 9032748
Alignment:
Q  106 gcaacaattagaccatctaaaatggtgggtgcgtcacctatttaattagaaccacattaaataggcacc 174  Q
    |||||| | |||||||| |||||||||||||| ||||||||||||     |||||||||||||||||||    
T  9032812 gcaacactaagaccatccaaaatggtgggtgcttcacctatttaa----caccacattaaataggcacc 9032748  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 151 - 206
Target Start/End: Original strand, 19494762 - 19494817
Alignment:
Q  151 ttagaaccacattaaataggcaccctcaatgcggagtataatatatgggtgtctat 206  Q
    |||| |||| ||||||||||||||| || || ||||||||||||||||||| ||||    
T  19494762 ttagtaccatattaaataggcacccccattgtggagtataatatatgggtgactat 19494817  T

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Target: scaffold1940 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1940
Description:

Target: scaffold1940; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 584 - 634
Alignment:
Q  156 accacattaaataggcaccctcaatgcggagtataatatatgggtgtctat 206  Q
    |||||||||||||||||||| || || |||| |||||||||||||| ||||    
T  584 accacattaaataggcacccccattgtggagaataatatatgggtggctat 634  T

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Target: scaffold0001 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 206
Target Start/End: Original strand, 428283 - 428369
Alignment:
Q  115 agaccatctaaaatggtgggtgcgtcacctatttaattagaaccacattaaataggcaccctcaatgcggagtataatatatgggtgtctat 206  Q
    |||||||| | |||||||||||| ||||||||    |||| |||| ||||||||||||||| || || ||||||||||| ||||||| ||||    
T  428283 agaccatccacaatggtgggtgcttcacctat----ttagcaccagattaaataggcaccc-cattgtggagtataatacatgggtggctat 428369  T

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