View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8511_low_6 (Length: 613)

Name: NF8511_low_6
Description: NF8511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8511_low_6
NF8511_low_6
[»] chr2 (5 HSPs)
chr2 (34-149)||(36942082-36942197)
chr2 (440-520)||(36942372-36942453)
chr2 (219-273)||(36942224-36942278)
chr2 (289-329)||(36942333-36942373)
chr2 (37-68)||(8810831-8810862)
[»] chr1 (1 HSPs)
chr1 (37-74)||(3391058-3391095)
[»] chr8 (1 HSPs)
chr8 (38-74)||(43101195-43101231)


Alignment Details
Target: chr2 (Bit Score: 96; Significance: 9e-47; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 34 - 149
Target Start/End: Original strand, 36942082 - 36942197
Alignment:
Q  34 ttttttgagttcttttaatgatatttttgttgatatcttaatataggggttaaaccatattttgatttaaacaaaactctaatttatattttgatctatt 133  Q
    |||||||||||||| |||| ||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  36942082 ttttttgagttcttataataatatttttgttgatattctaatataggggttaaaacatattttgatttaaacaaaactctaatttatattttgatctatt 36942181  T
Q  134 atcttttataaattgt 149  Q
    ||||||||||||||||    
T  36942182 atcttttataaattgt 36942197  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 440 - 520
Target Start/End: Original strand, 36942372 - 36942453
Alignment:
Q  440 gggctgagcttttttaataaattttgccaactttaga-aagaaaaacttgctgctatttattttttatgtgcttgtgtgtgt 520  Q
    |||||||||||||| ||||||||||||||| || | | ||||||||||||||||||||||||||||||| ||||||||||||    
T  36942372 gggctgagctttttaaataaattttgccaatttaaaacaagaaaaacttgctgctatttattttttatgggcttgtgtgtgt 36942453  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 219 - 273
Target Start/End: Original strand, 36942224 - 36942278
Alignment:
Q  219 atggtcttatattggccatgacttggtatattatgctttgttgttgtctgttgta 273  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  36942224 atggtgttatattggccatgacttgatatattatgctttgttgttgtctgatgta 36942278  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 289 - 329
Target Start/End: Original strand, 36942333 - 36942373
Alignment:
Q  289 ccttaatatcgtcatagtgcatgtttattttggtttaaagg 329  Q
    |||||||||||||||||| ||||||| ||||||||||||||    
T  36942333 ccttaatatcgtcatagtccatgtttgttttggtttaaagg 36942373  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 68
Target Start/End: Complemental strand, 8810862 - 8810831
Alignment:
Q  37 tttgagttcttttaatgatatttttgttgata 68  Q
    ||||||||||||||||||||||||||||||||    
T  8810862 tttgagttcttttaatgatatttttgttgata 8810831  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 74
Target Start/End: Complemental strand, 3391095 - 3391058
Alignment:
Q  37 tttgagttcttttaatgatatttttgttgatatcttaa 74  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  3391095 tttgagttcttttaatgatgttttggttgatatcttaa 3391058  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 43101195 - 43101231
Alignment:
Q  38 ttgagttcttttaatgatatttttgttgatatcttaa 74  Q
    |||||||| |||||||||||||||||||||| |||||    
T  43101195 ttgagttcatttaatgatatttttgttgataccttaa 43101231  T

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