View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8511_low_61 (Length: 330)

Name: NF8511_low_61
Description: NF8511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8511_low_61
NF8511_low_61
[»] chr5 (1 HSPs)
chr5 (14-311)||(16113214-16113511)


Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 14 - 311
Target Start/End: Original strand, 16113214 - 16113511
Alignment:
Q  14 agaccaaggaccaccattagtccattactgaactatatttcagtatatattttgtttctaaaattaagagtttcaaataattctaactcctattgaaaat 113  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  16113214 agaccaaggaccaccattagtccattactgaactatatttcagcacatattttgtttttaaaattaaaagtttcaaataattctaactcctattgaaaat 16113313  T
Q  114 gataatgttcctaacactactattttttatttctataatatctaacttaaaaaccatagtgcattattagaactaaaaagaaggacaagctcacaatgtt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16113314 gataatgttcctaacactactattttttatttctataatatctaacttaaaaaccatagtgcattattagaactaaaaagaaggacaagctcacaatgtt 16113413  T
Q  214 tgttgtcataatgaggactttaaaatcaagcgacatgctacatcaaaaaataaataaaatcaagcaacatgaacccttacctaaataatgttttgtaa 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16113414 tgttgtcataatgaggactttaaaatcaagcgacatgctacatcaaaaaataaataaaatcaagcaacatgaacccttacctaaataatgttttgtaa 16113511  T

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