View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8511_low_64 (Length: 320)
Name: NF8511_low_64
Description: NF8511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8511_low_64 |
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Alignment Details
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 30708364 - 30708065
Alignment:
| Q |
1 |
ggtgcaataagaaacttgattgaacttgagggtcttggctgcaccatcatacacgaagtggatgttcacaacatgaatcaacaccatcaactcaaacacc |
100 |
Q |
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| T |
30708364 |
ggtgcaataagaaacttgattgaacttgagggtcttggctgcaccatcatgcacgaagtggatgttcacaacatgaatcaacaccatcaactcaaacacc |
30708265 |
T |
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| Q |
101 |
acaannnnnnngatcgaataatctttaattttcctcattctggtttcttccaaaatgaaagtgatgcttgggtgatcgggtaagttaaatagagagggtt |
200 |
Q |
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| T |
30708264 |
acaatttttttgatcgaataatctttaattttcctcattctggtttcttccaaaatgaaagtgatgcttgggtgatcgggtaagttaaatagagagggtt |
30708165 |
T |
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| Q |
201 |
tttatcatgtgtaaattcgtatacattaagaagtttaacatagtaatttctcattttaacttatctattttttacttaaatatataactttttaatggat |
300 |
Q |
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| T |
30708164 |
tttattatgtgtaaattcgcattcgttaagaagtttaacatagtaatttttcattttaacttatatatttttta-ttaaatatataactttttaatggat |
30708066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 144
Target Start/End: Complemental strand, 30727494 - 30727353
Alignment:
| Q |
3 |
tgcaataagaaacttgattgaacttgagggtcttggctgcaccatcatacacgaagtggatgttcacaacatgaatcaacaccatcaactcaaacaccac |
102 |
Q |
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||||||| ||||||| ||||||||| |||||||||||||||||| | |||||||| || |||||||||||||| ||||||||| | ||||| ||| | |
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| T |
30727494 |
tgcaatatcaaacttggatgaacttgaaggtcttggctgcaccatcttgcacgaagtagacgttcacaacatgaaacaacaccattatctcaagcacagc |
30727395 |
T |
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| Q |
103 |
aannnnnnngatcgaataatctttaattttcctcattctggt |
144 |
Q |
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| T |
30727394 |
aatgattttcatcgaataatcttcaattttcctcattctggt |
30727353 |
T |
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