View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8511_low_66 (Length: 305)
Name: NF8511_low_66
Description: NF8511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8511_low_66 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 21 - 298
Target Start/End: Original strand, 47407306 - 47407583
Alignment:
| Q |
21 |
ggtggaacctgctgctcccactcaccctccgcctcccctgtgggatcctttacggtgccttgattgacaccaccaccctgttcattttgaccagatttaa |
120 |
Q |
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| T |
47407306 |
ggtggaacctgctgctcccactcaccctccgcctcccctgcaggatcctttatggtgccttgattgacatcaccaccctgttcattttgaccagaattaa |
47407405 |
T |
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| Q |
121 |
cagaaggcagcccatgcaatttagataaatgatgcttttgttgctggtcagtagaaaggtcattaggttctgcggatgattgccaggaatttaaagtttg |
220 |
Q |
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| T |
47407406 |
cagaaggcaacccatgcaatttagataaatgatgcttatgttgctgctctgtagaaaggtcattaggttctgctgatgattgccaggaatttaaagtttg |
47407505 |
T |
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| Q |
221 |
ttgtgatgctgtattgtttaccacagtcgatactgatccacctcgcattctcttaggatcattgaataaactctgctg |
298 |
Q |
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| T |
47407506 |
ttgtgatgctgtattgtttaccacagtcgatactgatccacctcgcattctcttaggatcattgaataaactctgctg |
47407583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 66 - 190
Target Start/End: Original strand, 47390192 - 47390316
Alignment:
| Q |
66 |
tcctttacggtgccttgattgacaccaccaccctgttcattttgaccagatttaacagaaggcagcccatgcaatttagataaatgatgcttttgttgct |
165 |
Q |
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| T |
47390192 |
tcctttacagtgccttgattgataccactaccctgttcattttgaccagaattaacagaaggcaacccatgcaacttagataaatgatgcctatgttgct |
47390291 |
T |
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| Q |
166 |
ggtcagtagaaaggtcattaggttc |
190 |
Q |
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| T |
47390292 |
gctcaatagaaaggtcattaggttc |
47390316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 187 - 295
Target Start/End: Original strand, 47390358 - 47390466
Alignment:
| Q |
187 |
gttctgcggatgattgccaggaatttaaagtttgttgtgatgctgtattgtttaccacagtcgatactgatccacctcgcattctcttaggatcattgaa |
286 |
Q |
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| T |
47390358 |
gttctgctgatgtttgccaagaatttgaagtttggtgtgatgatgtattatttaccacagtcgacacagatccacctggcattctcttaggatcattgaa |
47390457 |
T |
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| Q |
287 |
taaactctg |
295 |
Q |
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||||||| |
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| T |
47390458 |
agaactctg |
47390466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 151
Target Start/End: Original strand, 47418698 - 47418772
Alignment:
| Q |
77 |
gccttgattgacaccaccaccctgttcattttgaccagatttaacagaaggcagcccatgcaatttagataaatg |
151 |
Q |
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| T |
47418698 |
gccttgattgacaccaataccctgttcaatttcaccagagttaacaataggcatcccatgcaatttagataaatg |
47418772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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