View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8511_low_72 (Length: 277)
Name: NF8511_low_72
Description: NF8511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8511_low_72 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 3978054 - 3978307
Alignment:
| Q |
1 |
tgccctgcagctggtgcttagaaagtctcgtgcttatggtggtcttgcacgaggtcttcatgaaggtgcaaaagtgattgagaagcatgctgcacagctt |
100 |
Q |
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| T |
3978054 |
tgccctgcagctggtgcttagaaagtctcgtgcttatggtggtcttgcacgaggtcttcatgaaggtgcaaaagtgattgagaagcatgctgcacagctt |
3978153 |
T |
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| Q |
101 |
tgtgttctagctgaagattgtgaccaacctgattatgtcaaattggtgaaagccctctgcacagagcacaatgttagcttgttgacagttccaagtgcaa |
200 |
Q |
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| T |
3978154 |
tgtgttctagctgaagattgtgaccaacctgattatgtcaaattggtgaaagccctctgcgcagagcacaatgttagcttgttgacagttccaagtgcaa |
3978253 |
T |
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| Q |
201 |
agacacttggagagtgggctggtgtaagtgaccttgattcttaacctagtttta |
254 |
Q |
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| T |
3978254 |
agacacttggagagtgggctggtgtaagtgaccttgattcttaacctagtttta |
3978307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 39233698 - 39233482
Alignment:
| Q |
20 |
agaaagtctcgtgcttatggtggtcttgcacgaggtcttcatgaaggtgcaaaagtgattgagaagcatgctgcacagctttgtgttctagctgaagatt |
119 |
Q |
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| T |
39233698 |
agaaagtctcgtgcttatggtggacttgcacgcggtcttcatgaaagtgctaaagtgatcgagaagcatgctgcacagctctgtgttcttgctgaggatt |
39233599 |
T |
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| Q |
120 |
gtgaccaacctgattatgtcaaattggtgaaagccctctgcacagagcacaatgttagcttgttgacagttccaagtgcaaagacacttggagagtgggc |
219 |
Q |
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| T |
39233598 |
gtgaccaacctgattacgtcaagttggtgaaagccctttgtgctgaacacagcgtcagcttgttgactgttccaaatgcaaagacccttggagaatgggc |
39233499 |
T |
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| Q |
220 |
tggtgtaagtgaccttg |
236 |
Q |
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| T |
39233498 |
tggtgtaagtgcccttg |
39233482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 35 - 230
Target Start/End: Original strand, 826889 - 827084
Alignment:
| Q |
35 |
tatggtggtcttgcacgaggtcttcatgaaggtgcaaaagtgattgagaagcatgctgcacagctttgtgttctagctgaagattgtgaccaacctgatt |
134 |
Q |
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||||||||||||||||| || || ||||||||||||||||| ||||||||| | | | ||||||||||||||| || |||||||||||||| ||||| | |
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| T |
826889 |
tatggtggtcttgcacgtggcctccatgaaggtgcaaaagtaattgagaagaacacaggacagctttgtgttcttgcagaagattgtgaccagcctgact |
826988 |
T |
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| Q |
135 |
atgtcaaattggtgaaagccctctgcacagagcacaatgttagcttgttgacagttccaagtgcaaagacacttggagagtgggctggtgtaagtg |
230 |
Q |
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| T |
826989 |
atgttaaacttgtcaaggctctttgtgctgagcacaatgttagtcttctgacagttcctagtgcgaagacacttggagaatgggctggtgtaagtg |
827084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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