View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8511_low_77 (Length: 271)
Name: NF8511_low_77
Description: NF8511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8511_low_77 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 25489460 - 25489242
Alignment:
| Q |
18 |
aatataagcccatcaaattatatgaaggcacaaacaaatatcttttctggaattttgagcagcacaaaattctccggaatgaacatctacctccataaca |
117 |
Q |
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| T |
25489460 |
aatataaacccatcaaattatatgaaggcacaaacaaatatcttttctagaattttgagcagcacaaaattctccggaatgaacatctacctccataaca |
25489361 |
T |
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| Q |
118 |
tgaacaatctataactttccttctcccagaaattcttagttgacacaagttgaatatgactttcattaagaaagatgaggtcggatttgaatctgactaa |
217 |
Q |
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| T |
25489360 |
tgaacaatctataaccctccttct--------ttcttagttgacacaagttgagtatgactttcattaagaaagacgaggtcggattagaatctgactaa |
25489269 |
T |
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| Q |
218 |
aatctcatgaagatgactatgactttt |
244 |
Q |
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| T |
25489268 |
aatttcatgaagatgactatgactttt |
25489242 |
T |
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