View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8511_low_79 (Length: 265)
Name: NF8511_low_79
Description: NF8511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8511_low_79 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 39314705 - 39314946
Alignment:
| Q |
1 |
catatataatgcataatatggagagaaaatagggtgttgaatgaaattataaaatttggaggtgtgtatttacatttatattgttgtttaacaaaacaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39314705 |
catatataatgcataatatggagagaaaatagggtgttgaatgaaattataaaatttggaggtgtgtatttacatttatattgttgtttaacaaaacaaa |
39314804 |
T |
|
| Q |
101 |
atacaactatttaattttggcaacaataatgcctatacataatgcaatagttcaggtgagattcagacattcttaaatgtgggcctaagaagtgacatgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39314805 |
atacaactatttaattttggcaacaataatgcctatacataatgcaatagttcaggtgagattcagacattcttaaatgtgggcctaagaagtgacatgt |
39314904 |
T |
|
| Q |
201 |
aagtggcacttttgtaccccaaaaacactcagaagaataata |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39314905 |
aagtggcacttttgtaccccaaaaacactcagaagaacaata |
39314946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University