View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8511_low_8 (Length: 585)
Name: NF8511_low_8
Description: NF8511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8511_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 1 - 570
Target Start/End: Complemental strand, 13293214 - 13292638
Alignment:
| Q |
1 |
ttattgtattccaatgcactcaactaaggactaatcgctatcgccatgggtggctaacattgttttgacgccatcgaaaggtgaacctggtagcaccaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13293214 |
ttattgtattccaatgcactcaactaaggactaatcgctatcgccatgggtggctaacattgttttgacgccatcgaaaggtgaacctggtagcaccaga |
13293115 |
T |
|
| Q |
101 |
tcgactctggagtgtcaaaagggtttggccttgcgaccactcaggttagaggttatttccaggttaaggcatatcaaacaatttcgatgtttatgttaaa |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13293114 |
tcgactctggagtgtcaaa-gggtttggccttgcgaccactcaggttagaggttatttccaggttaaggcatatcaaacaatttcgatgtttatgttaaa |
13293016 |
T |
|
| Q |
201 |
gaagacaattttagtactgaaaatatatacaagtaaccagtgattcatattttcaannnnnnn------aacaagactaggctcttaattggaatcatat |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| | | || |||||||||||||||||||||||||||| |
|
|
| T |
13293015 |
gaagacaattttagtactgaaaatatatacaagtaaccagtgattcatattattattatttttttttttaataagactaggctcttaattggaatcatat |
13292916 |
T |
|
| Q |
295 |
gaagttgttaaa-aactttagaatataggaattctactagtatatgaaagggtt-tgaagtccagacccattaagtaaattattcatatcataccagtgt |
392 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13292915 |
gaagttcttaaacaactttagaatataggaattctactagtatatgaaagggttatgaagtccagacccattaagtaaattattcatatcataccagtgt |
13292816 |
T |
|
| Q |
393 |
tgtttgttactatgtaataaagtcaatattaaatggatttaacttaatgtttaaaacacaaacaatacgtcaacaatgcatgcatttggaacctcaaatt |
492 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
13292815 |
tgtttgttactatgtaacaaagtcaaaattaaatggatttaacttaatgtttaaaacacaaacaatacgtaaacaatgcatacatttggaacctcaaatt |
13292716 |
T |
|
| Q |
493 |
ggaagatatcatgattttgttgagagaaattaaacaatattcaatatatgcacataactgacgaaaaagcagaagaaa |
570 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||| |
|
|
| T |
13292715 |
ggaagatatcatgattttgttgagagaaattaaacaatattcaatacatgcacatatctgacgaagaagcagaagaaa |
13292638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University