View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8511_low_81 (Length: 262)

Name: NF8511_low_81
Description: NF8511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8511_low_81
NF8511_low_81
[»] chr3 (15 HSPs)
chr3 (18-181)||(30154710-30154873)
chr3 (85-175)||(30086834-30086923)
chr3 (85-175)||(30056650-30056738)
chr3 (101-175)||(30074726-30074798)
chr3 (85-160)||(30073063-30073137)
chr3 (43-80)||(30132632-30132669)
chr3 (43-80)||(30143579-30143616)
chr3 (18-78)||(30050093-30050152)
chr3 (85-175)||(30069455-30069544)
chr3 (18-78)||(30072963-30073022)
chr3 (50-80)||(30086765-30086795)
chr3 (85-175)||(30050193-30050282)
chr3 (85-171)||(30082070-30082155)
chr3 (19-80)||(30173980-30174037)
chr3 (120-175)||(30458631-30458684)


Alignment Details
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 18 - 181
Target Start/End: Original strand, 30154710 - 30154873
Alignment:
Q  18 gattgatggatcaaaagaaagaattaaccagctacaatatactattgtttgttaattatgagcatagcaatttataaacaaaataatgtttttgtctgat 117  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  30154710 gattgattgatcaaaagaaagaattaaccagctacaatatactattgtttgttaattatgagcatagcaatttatagataaaataatgtttttgtctgat 30154809  T
Q  118 ccatggatcctgaaatattgccttattaaattcagaagcgaggagcacgaggttaattgcttat 181  Q
    ||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  30154810 ccatgtatcctgaaatattgccttattaaattcagaagtgaggaacacgaggttaattgcttat 30154873  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 85 - 175
Target Start/End: Original strand, 30086834 - 30086923
Alignment:
Q  85 caatttataaacaaaat-aatgtttttgtctgatccatggatcctgaaatattgccttattaaattcagaagcgaggagcacgaggttaatt 175  Q
    ||||||||| ||||||| |||||||||| || ||||||||||||| ||||  || ||||||||||||||||||||||  |||||||||||||    
T  30086834 caatttatagacaaaattaatgtttttgccttatccatggatcctcaaat--tgtcttattaaattcagaagcgagggacacgaggttaatt 30086923  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 175
Target Start/End: Original strand, 30056650 - 30056738
Alignment:
Q  85 caatttataaacaaaataatgtttttgtctgatccatggatcctgaaatattgccttattaaattcagaagcgaggagcacgaggttaatt 175  Q
    ||||||||| ||||||||||||||||| || ||||||||||||||||  |||| | ||||||||||| ||| ||||  ||||| |||||||    
T  30056650 caatttatagacaaaataatgtttttgccttatccatggatcctgaa--attgtcctattaaattcaaaagtgagggacacgaagttaatt 30056738  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 175
Target Start/End: Original strand, 30074726 - 30074798
Alignment:
Q  101 taatgtttttgtctgatccatggatcctgaaatattgccttattaaattcagaagcgaggagcacgaggttaatt 175  Q
    ||||||||||| || ||||||||||||| ||||  || ||||||||||||||||||||||  |||||||||||||    
T  30074726 taatgtttttgccttatccatggatcctcaaat--tgtcttattaaattcagaagcgagggacacgaggttaatt 30074798  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 160
Target Start/End: Original strand, 30073063 - 30073137
Alignment:
Q  85 caatttataaacaaaat-aatgtttttgtctgatccatggatcctgaaatattgccttattaaattcagaagcgagg 160  Q
    ||||||||| ||||||| |||||||||| || ||||||||||||| ||||  || ||||||||||||||||||||||    
T  30073063 caatttatagacaaaattaatgtttttgccttatccatggatcctcaaat--tgtcttattaaattcagaagcgagg 30073137  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 30132632 - 30132669
Alignment:
Q  43 aaccagctacaatatactattgtttgttaattatgagc 80  Q
    |||||||||||| |||||||||||||||||||||||||    
T  30132632 aaccagctacaaaatactattgtttgttaattatgagc 30132669  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 30143579 - 30143616
Alignment:
Q  43 aaccagctacaatatactattgtttgttaattatgagc 80  Q
    |||||||||||| |||||||||||||||||||||||||    
T  30143579 aaccagctacaaaatactattgtttgttaattatgagc 30143616  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 30050093 - 30050152
Alignment:
Q  18 gattgatggatcaaaagaaagaattaaccagctacaatatactattgtttgttaattatga 78  Q
    ||||||| |||||||||||||||  | |  |||||||||||||||||||||||||||||||    
T  30050093 gattgattgatcaaaagaaagaaccagct-gctacaatatactattgtttgttaattatga 30050152  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 175
Target Start/End: Original strand, 30069455 - 30069544
Alignment:
Q  85 caatttataaacaaaat-aatgtttttgtctgatccatggatcctgaaatattgccttattaaattcagaagcgaggagcacgaggttaatt 175  Q
    ||||||||| ||||||| |||||||||  || ||||||||||||| ||||  || |||||||||||||  |||||||  |||||||||||||    
T  30069455 caatttatagacaaaattaatgtttttcccttatccatggatcctcaaat--tgtcttattaaattcaacagcgagggacacgaggttaatt 30069544  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 30072963 - 30073022
Alignment:
Q  18 gattgatggatcaaaagaaagaattaaccagctacaatatactattgtttgttaattatga 78  Q
    ||||||| |||||||||||||||  | |  |||||||||||||||||||||||||||||||    
T  30072963 gattgattgatcaaaagaaagaaccagct-gctacaatatactattgtttgttaattatga 30073022  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 80
Target Start/End: Original strand, 30086765 - 30086795
Alignment:
Q  50 tacaatatactattgtttgttaattatgagc 80  Q
    |||||||||||||||||||||||||||||||    
T  30086765 tacaatatactattgtttgttaattatgagc 30086795  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 175
Target Start/End: Original strand, 30050193 - 30050282
Alignment:
Q  85 caatttataaacaaaat-aatgtttttgtctgatccatggatcctgaaatattgccttattaaattcagaagcgaggagcacgaggttaatt 175  Q
    ||||||||| ||||||| |||||||||| || ||||||||||| | ||||  ||  ||||||||||||  |||||||  |||||||||||||    
T  30050193 caatttatagacaaaattaatgtttttgccttatccatggatcttcaaat--tgttttattaaattcaacagcgagggacacgaggttaatt 30050282  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 171
Target Start/End: Original strand, 30082070 - 30082155
Alignment:
Q  85 caatttataaacaaaat-aatgtttttgtctgatccatggatcctgaaatattgccttattaaattcagaagcgaggagcacgaggtt 171  Q
    ||||||||| ||||||| |||||||||| || |||  |||||||| ||||  || ||||||| ||||||||||||||  |||||||||    
T  30082070 caatttatagacaaaattaatgtttttgccttatcagtggatcctcaaat--tgtcttattatattcagaagcgagggacacgaggtt 30082155  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 30173980 - 30174037
Alignment:
Q  19 attgatggatcaaaagaaagaattaaccagctacaatatactattgtttgttaattatgagc 80  Q
    |||||| |||||||||||||||    ||| ||| |||||||||||||||||||||| |||||    
T  30173980 attgattgatcaaaagaaagaa----ccatctaaaatatactattgtttgttaattctgagc 30174037  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 175
Target Start/End: Complemental strand, 30458684 - 30458631
Alignment:
Q  120 atggatcctgaaatattgccttattaaattcagaagcgaggagcacgaggttaatt 175  Q
    ||||||||||||||  || ||||||||||||| ||||||||  |||||||||||||    
T  30458684 atggatcctgaaat--tgtcttattaaattcaaaagcgagggacacgaggttaatt 30458631  T

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