View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8511_low_84 (Length: 253)
Name: NF8511_low_84
Description: NF8511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8511_low_84 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 233
Target Start/End: Complemental strand, 23552915 - 23552699
Alignment:
| Q |
17 |
acttcacccttacagacaggacattctttagctagagaggatcttctaaacgacaatggtgattttgtattcaaccatctatacaagcatggccaacaaa |
116 |
Q |
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| T |
23552915 |
acttcacccttgcagacaggacattctttagctagagaggatcttctaaacgacaatggtgattttgtattcaaccatctatacaagcatggccaacaaa |
23552816 |
T |
|
| Q |
117 |
acaaatggccacaacaagtaagaacaggatccttagccaaatcaaaacaaatattacaatcatagaaacatctatcattgccacaatccttttcatcaac |
216 |
Q |
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||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
23552815 |
acaaatgaccgcaacaagtaagaacaggttccttagccaaatcaaaacaaatattacaatcatagaaacctctatcattgccacaatccttttcatcaac |
23552716 |
T |
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| Q |
217 |
attctcctttttctctg |
233 |
Q |
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||||||||||||||||| |
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| T |
23552715 |
attctcctttttctctg |
23552699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 17 - 233
Target Start/End: Complemental strand, 23305435 - 23305219
Alignment:
| Q |
17 |
acttcacccttacagacaggacattctttagctagagaggatcttctaaacgacaatggtgattttgtattcaaccatctatacaagcatggccaacaaa |
116 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23305435 |
acttcacccttgcagacaggacattctttagctagagaggatcttgtaaacgacaatggtgattttgtattcaaccatctatacaagcatggccaacaaa |
23305336 |
T |
|
| Q |
117 |
acaaatggccacaacaagtaagaacaggatccttagccaaatcaaaacaaatattacaatcatagaaacatctatcattgccacaatccttttcatcaac |
216 |
Q |
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| T |
23305335 |
acaaatggccacaacaagtaagaacaggatccttagccaatacaaaacaaatattacaatcatagaaacctctatcattgccacaatccttttcatcaat |
23305236 |
T |
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| Q |
217 |
attctcctttttctctg |
233 |
Q |
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||||||||||||||||| |
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| T |
23305235 |
attctcctttttctctg |
23305219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 88 - 178
Target Start/End: Complemental strand, 23324260 - 23324170
Alignment:
| Q |
88 |
caaccatctatacaagcatggccaacaaaacaaatggccacaacaagtaagaacaggatccttagccaaatcaaaacaaatattacaatca |
178 |
Q |
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| T |
23324260 |
caaccatctatacaagcatggccaacaaaacaaatgaccacaacaagtaaccacaggattcttagccaaatctaaacaaatattacaatca |
23324170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 88 - 185
Target Start/End: Complemental strand, 23235073 - 23234976
Alignment:
| Q |
88 |
caaccatctatacaagcatggccaacaaaacaaatggccacaacaagtaagaacaggatccttagccaaatcaaaacaaatattacaatcatagaaac |
185 |
Q |
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| T |
23235073 |
caaccatctatataaacatggccaacagaacaaatgaccgcaacgagtcacaacaggatccttagccaaacctaaacaaatattacaatcatagaaac |
23234976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 91 - 178
Target Start/End: Complemental strand, 37120179 - 37120092
Alignment:
| Q |
91 |
ccatctatacaagcatggccaacaaaacaaatggccacaacaagtaagaacaggatccttagccaaatcaaaacaaatattacaatca |
178 |
Q |
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||||| ||| ||||| |||||||||||| ||||||||| ||||| | |||||| ||||| |||||||| ||||| |||||||||||| |
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| T |
37120179 |
ccatcgatataagcactgccaacaaaacagatggccacagcaagtcaaaacaggctccttggccaaatccaaacagatattacaatca |
37120092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 184
Target Start/End: Original strand, 10174692 - 10174769
Alignment:
| Q |
107 |
ggccaacaaaacaaatggccacaacaagtaagaacaggatccttagccaaatcaaaacaaatattacaatcatagaaa |
184 |
Q |
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||||||||||||||||| |||||||| || | ||||||||| | || | ||| |||||||||||||||||| ||||| |
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| T |
10174692 |
ggccaacaaaacaaatgaccacaacatgtcaaaacaggatctcttgcaatatccaaacaaatattacaatcaaagaaa |
10174769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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