View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8511_low_87 (Length: 251)
Name: NF8511_low_87
Description: NF8511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8511_low_87 |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 18107386 - 18107148
Alignment:
| Q |
1 |
taggaaataaacatacaatacctgaatatcaaatgttaggaaagatatggaatgaagaactgtgcgtttgggaatccaactttccacaataacacttttg |
100 |
Q |
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| T |
18107386 |
taggaaataaacatacaatacctgaatatcaaatgttaggcaagatatggaatgaagaactgtgcgtttgggaatccaactttccacaataacacttttg |
18107287 |
T |
|
| Q |
101 |
agacacaggaccaaacatgttggaagtttgcctagaaaattaacttaagattgtaaatacaaaaacctttgataaaactttgttccttacttcattttaa |
200 |
Q |
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| T |
18107286 |
agacacaggaccaaacatgttggaagtttgcctagaaaattaacttaagattgtaaatacaaaaacctttgataaaactttgttccttacttcattttaa |
18107187 |
T |
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| Q |
201 |
tctctatgtaacatgcatgtataaccatacacttaaaca |
239 |
Q |
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| T |
18107186 |
tctctatgtaacatgcatgtataaccatacacttaaaca |
18107148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 18097927 - 18097742
Alignment:
| Q |
1 |
taggaaataaacatacaatacctgaatatcaaa-tgttaggaaagatatggaatgaagaactgtgcgtttgggaatccaactttccacaataacactttt |
99 |
Q |
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| T |
18097927 |
taggaaataaacatacaatacctgaacatcaaaatgtttcgcaagatgtggaattaagaagtgtgtgtttgggaatccaactttccaaaataacattttt |
18097828 |
T |
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| Q |
100 |
gagacacaggaccaaacatgttggaagtttgcctagaaaattaacttaagattgtaaatacaaaaacctttgataaaactttgttc |
185 |
Q |
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| T |
18097827 |
gagacaaaggaccaaacaggttcgaaattgcgcaagaaaattaacttcagattgtatatacaaaaacctgtgataaaattttgttc |
18097742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 67 - 177
Target Start/End: Complemental strand, 12720010 - 12719902
Alignment:
| Q |
67 |
tttgggaatccaactttccacaataacacttttgagacacaggaccaaacatgttggaagtttgcctagaaaattaacttaagattgtaaatacaaaaac |
166 |
Q |
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||||||||| |||||||||| ||||||||||||||||||||||| | |||| || || || ||| |||||| |||| | ||||||||||| |||||| |
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| T |
12720010 |
tttgggaattcaactttccatgataacacttttgagacacaggac--atcatgctgtaaattggccaagaaaactaacatcggattgtaaatagaaaaac |
12719913 |
T |
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| Q |
167 |
ctttgataaaa |
177 |
Q |
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|||||||||| |
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| T |
12719912 |
gtttgataaaa |
12719902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 176
Target Start/End: Original strand, 18138547 - 18138589
Alignment:
| Q |
134 |
agaaaattaacttaagattgtaaatacaaaaacctttgataaa |
176 |
Q |
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| T |
18138547 |
agaaaattaacttcagattgtaaatactaaaacctgtgataaa |
18138589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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