View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8511_low_88 (Length: 250)

Name: NF8511_low_88
Description: NF8511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8511_low_88
NF8511_low_88
[»] chr6 (7 HSPs)
chr6 (83-241)||(14326231-14326389)
chr6 (83-241)||(14419241-14419399)
chr6 (118-205)||(16269513-16269600)
chr6 (1-56)||(14326416-14326471)
chr6 (1-56)||(14419426-14419481)
chr6 (127-192)||(28931016-28931083)
chr6 (115-172)||(22299804-22299861)
[»] chr3 (14 HSPs)
chr3 (83-241)||(23561006-23561163)
chr3 (127-228)||(12060749-12060850)
chr3 (1-56)||(23560924-23560979)
chr3 (118-205)||(48866275-48866362)
chr3 (118-200)||(49334233-49334315)
chr3 (118-182)||(39287606-39287670)
chr3 (101-205)||(47854620-47854724)
chr3 (142-193)||(51825541-51825592)
chr3 (132-199)||(52293432-52293499)
chr3 (142-192)||(42633806-42633856)
chr3 (142-187)||(2124180-2124225)
chr3 (143-192)||(41387354-41387403)
chr3 (147-192)||(42632852-42632897)
chr3 (118-199)||(48825952-48826033)
[»] chr1 (16 HSPs)
chr1 (118-205)||(2971833-2971920)
chr1 (111-207)||(40812500-40812595)
chr1 (119-204)||(21278114-21278199)
chr1 (118-199)||(35684098-35684179)
chr1 (118-187)||(34531815-34531884)
chr1 (118-199)||(48973338-48973419)
chr1 (118-192)||(25889388-25889462)
chr1 (142-187)||(25786119-25786164)
chr1 (142-187)||(52181225-52181270)
chr1 (103-199)||(48934990-48935086)
chr1 (142-192)||(47411368-47411418)
chr1 (115-172)||(13641415-13641472)
chr1 (142-187)||(31859741-31859786)
chr1 (201-241)||(3978122-3978162)
chr1 (153-193)||(13567318-13567358)
chr1 (147-187)||(25787089-25787129)
[»] chr8 (4 HSPs)
chr8 (127-228)||(8096469-8096570)
chr8 (119-206)||(36071273-36071360)
chr8 (142-187)||(27750541-27750586)
chr8 (142-187)||(38589971-38590016)
[»] chr2 (7 HSPs)
chr2 (111-241)||(14510417-14510547)
chr2 (118-199)||(33836909-33836990)
chr2 (118-203)||(42246726-42246811)
chr2 (126-193)||(6208969-6209036)
chr2 (118-199)||(2305680-2305761)
chr2 (118-199)||(41312640-41312721)
chr2 (132-199)||(3665364-3665431)
[»] chr7 (12 HSPs)
chr7 (118-205)||(33458443-33458530)
chr7 (118-192)||(30223872-30223946)
chr7 (142-193)||(35128112-35128163)
chr7 (118-192)||(30222792-30222866)
chr7 (132-193)||(41126385-41126446)
chr7 (142-186)||(22060615-22060659)
chr7 (118-198)||(36673731-36673811)
chr7 (142-192)||(22061715-22061765)
chr7 (118-193)||(7146924-7147000)
chr7 (88-184)||(41618364-41618460)
chr7 (111-199)||(47163291-47163379)
chr7 (165-193)||(48671222-48671250)
[»] chr5 (5 HSPs)
chr5 (118-187)||(40059221-40059290)
chr5 (118-207)||(26911290-26911379)
chr5 (142-193)||(5062106-5062157)
chr5 (118-185)||(20988844-20988911)
chr5 (154-199)||(15613644-15613689)
[»] chr4 (14 HSPs)
chr4 (118-201)||(40146528-40146611)
chr4 (103-192)||(29834313-29834402)
chr4 (118-199)||(30671960-30672041)
chr4 (142-193)||(1273353-1273404)
chr4 (118-208)||(4373508-4373598)
chr4 (88-199)||(15446532-15446643)
chr4 (118-192)||(29833518-29833592)
chr4 (111-192)||(47606488-47606570)
chr4 (118-203)||(48206295-48206380)
chr4 (142-193)||(33377284-33377335)
chr4 (142-193)||(44128254-44128305)
chr4 (142-193)||(55953772-55953823)
chr4 (118-187)||(23153157-23153226)
chr4 (118-186)||(526614-526682)
[»] scaffold0178 (1 HSPs)
scaffold0178 (118-204)||(2160-2246)
[»] scaffold0177 (1 HSPs)
scaffold0177 (118-192)||(1901-1975)
[»] scaffold0002 (1 HSPs)
scaffold0002 (154-198)||(458392-458436)


Alignment Details
Target: chr6 (Bit Score: 131; Significance: 5e-68; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 83 - 241
Target Start/End: Complemental strand, 14326389 - 14326231
Alignment:
Q  83 attagtaagaaattcaatagaaataaatatgatcctatgttgttagttcattgtatatttgtgtgctttctaaatccagccattgatcaccaatcttaaa 182  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  14326389 attagtaagaaattcaatagaaatgaatatgatcctatgttgtgagttcattgtatatttgtgcgctttctaaattcagccattgatcaccaatcttaaa 14326290  T
Q  183 tgacaagtggataaggggttaacggaaaggaccacaatagtaaacgactgaagaattat 241  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||    
T  14326289 tgacaagtggataagaggttaacggaaaggaccacaatagtaaacgatagaagaattat 14326231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 83 - 241
Target Start/End: Complemental strand, 14419399 - 14419241
Alignment:
Q  83 attagtaagaaattcaatagaaataaatatgatcctatgttgttagttcattgtatatttgtgtgctttctaaatccagccattgatcaccaatcttaaa 182  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  14419399 attagtaagaaattcaatagaaatgaatatgatcctatgttgtgagttcattgtatatttgtgcgctttctaaattcagccattgatcaccaatcttaaa 14419300  T
Q  183 tgacaagtggataaggggttaacggaaaggaccacaatagtaaacgactgaagaattat 241  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||    
T  14419299 tgacaagtggataagaggttaacggaaaggaccacaatagtaaacgatagaagaattat 14419241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 118 - 205
Target Start/End: Original strand, 16269513 - 16269600
Alignment:
Q  118 tatgttgttagttcattgtatatttgtgtgctttctaaatccagccattgatcaccaatcttaaatgacaagtggataaggggttaac 205  Q
    ||||||||  ||||||||||| |||||| |||||||||||||| || ||||||||||||||||||| ||| |||||||||||||||||    
T  16269513 tatgttgtgcgttcattgtatgtttgtgcgctttctaaatccaacccttgatcaccaatcttaaattacacgtggataaggggttaac 16269600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 14326471 - 14326416
Alignment:
Q  1 gaacaagattggaggaagaaagaagaggacaaagggaacaggggatgagaagataa 56  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14326471 gaacaagattggaggaagaaagaagaggacaaagggaacacgggatgagaagataa 14326416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 14419481 - 14419426
Alignment:
Q  1 gaacaagattggaggaagaaagaagaggacaaagggaacaggggatgagaagataa 56  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14419481 gaacaagattggaggaagaaagaagaggacaaagggaacacgggatgagaagataa 14419426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 192
Target Start/End: Original strand, 28931016 - 28931083
Alignment:
Q  127 agttcattgtatatttgt--gtgctttctaaatccagccattgatcaccaatcttaaatgacaagtgg 192  Q
    ||||||||||||||||||  ||||||| |||||||| || ||||||| ||||||||| ||||| ||||    
T  28931016 agttcattgtatatttgtgagtgctttttaaatccaacccttgatcatcaatcttaagtgacatgtgg 28931083  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 172
Target Start/End: Original strand, 22299804 - 22299861
Alignment:
Q  115 tcctatgttgttagttcattgtatatttgtgtgctttctaaatccagccattgatcac 172  Q
    ||||||||| | |||||||||||||| |||| ||| ||||||||||||  ||||||||    
T  22299804 tcctatgttttgagttcattgtatatctgtgcgctctctaaatccagctcttgatcac 22299861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 83 - 241
Target Start/End: Original strand, 23561006 - 23561163
Alignment:
Q  83 attagtaagaaattcaatagaaataaatatgatcctatgttgttagttcattgtatatttgtgtgctttctaaatccagccattgatcaccaatcttaaa 182  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||| ||| |||||||||||| ||| ||||||||||||||||||||    
T  23561006 attagtaagaaattcaatagaaatgaatatgatcctatgttgtaagttcattatatatctgtatgctttctaaattcagtcattgatcaccaatcttaaa 23561105  T
Q  183 tgacaagtggataaggggttaacggaaaggaccacaatagtaaacgactgaagaattat 241  Q
    ||||| ||||| ||||||||||||||||||| |||||||||||||| | ||||||||||    
T  23561106 tgacatgtggacaaggggttaacggaaagga-cacaatagtaaacgtcagaagaattat 23561163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 12060850 - 12060749
Alignment:
Q  127 agttcattgtatatttgtgtgctttctaaatccagccattgatcaccaatcttaaatgacaagtggataaggggttaacggaaaggaccacaatagtaaa 226  Q
    |||| |||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||| ||||||| |  ||| | ||| ||||||| |||||||||    
T  12060850 agtttattgtatatttgcgtgctttctaaattcagccattgatcaccaatcttaagtgacatgtggatatgaagttgatggagaggaccaaaatagtaaa 12060751  T
Q  227 cg 228  Q
    ||    
T  12060750 cg 12060749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 23560924 - 23560979
Alignment:
Q  1 gaacaagattggaggaagaaagaagaggacaaagggaacaggggatgagaagataa 56  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  23560924 gaacaagataggaggaagaaagaagaggacaaagggaacacgggatgagaagataa 23560979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 118 - 205
Target Start/End: Complemental strand, 48866362 - 48866275
Alignment:
Q  118 tatgttgttagttcattgtatatttgtgtgctttctaaatccagccattgatcaccaatcttaaatgacaagtggataaggggttaac 205  Q
    |||||||| ||| ||||||||||||||| ||||||||||||||| | ||||||| |||||| |||||||| ||| | |||||||||||    
T  48866362 tatgttgtgagtccattgtatatttgtgcgctttctaaatccagtccttgatcatcaatctaaaatgacacgtgaacaaggggttaac 48866275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 200
Target Start/End: Original strand, 49334233 - 49334315
Alignment:
Q  118 tatgttgttagttcattgtatatttgtgtgctttctaaatccagccattgatcaccaatcttaaatgacaagtggataagggg 200  Q
    |||||||| ||||||||||||||||||| ||| || ||||||||||||  ||||||||| |||||||| | ||||| ||||||    
T  49334233 tatgttgtgagttcattgtatatttgtgcgctgtccaaatccagccatcaatcaccaatattaaatgaaatgtggacaagggg 49334315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 182
Target Start/End: Complemental strand, 39287670 - 39287606
Alignment:
Q  118 tatgttgttagttcattgtatatttgtgtgctttctaaatccagccattgatcaccaatcttaaa 182  Q
    |||||||| ||  |||||||||||||||| ||||  ||||| |||| ||||||||||||||||||    
T  39287670 tatgttgtgagcccattgtatatttgtgtacttttcaaatctagcccttgatcaccaatcttaaa 39287606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 205
Target Start/End: Complemental strand, 47854724 - 47854620
Alignment:
Q  101 agaaataaatatgatcctatgttgttagttcattgtatatttgtgtgctttctaaatccagccattgatcaccaatcttaaatgacaagtggataagggg 200  Q
    ||||||| | |||||| |||||||| ||| ||||||||| ||| || ||||  ||||| |  | |||||||| |||||||||||||| ||||| |||||     
T  47854724 agaaatagaaatgatcatatgttgtgagtccattgtatacttgcgtacttttcaaatctaatccttgatcacaaatcttaaatgacatgtggacaagggt 47854625  T
Q  201 ttaac 205  Q
    |||||    
T  47854624 ttaac 47854620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 193
Target Start/End: Original strand, 51825541 - 51825592
Alignment:
Q  142 tgtgtgctttctaaatccagccattgatcaccaatcttaaatgacaagtgga 193  Q
    |||||||||| ||||| || |||||||||||||||||||| ||||| |||||    
T  51825541 tgtgtgctttttaaattcaaccattgatcaccaatcttaactgacacgtgga 51825592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 199
Target Start/End: Original strand, 52293432 - 52293499
Alignment:
Q  132 attgtatatttgtgtgctttctaaatccagccattgatcaccaatcttaaatgacaagtggataaggg 199  Q
    |||||||| |||||| ||||  ||||  |||| ||||||||||||||||||||||| ||||| |||||    
T  52293432 attgtatacttgtgtacttttcaaatatagcccttgatcaccaatcttaaatgacatgtggacaaggg 52293499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 42633806 - 42633856
Alignment:
Q  142 tgtgtgctttctaaatccagccattgatcaccaatcttaaatgacaagtgg 192  Q
    |||||||||| |||||||| || ||||| ||||||||||||||||| ||||    
T  42633806 tgtgtgctttttaaatccaaccgttgattaccaatcttaaatgacatgtgg 42633856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 2124225 - 2124180
Alignment:
Q  142 tgtgtgctttctaaatccagccattgatcaccaatcttaaatgaca 187  Q
    |||||||||| |||||||| || |||||||| ||||||||||||||    
T  2124225 tgtgtgctttttaaatccaaccgttgatcactaatcttaaatgaca 2124180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 192
Target Start/End: Original strand, 41387354 - 41387403
Alignment:
Q  143 gtgtgctttctaaatccagccattgatcaccaatcttaaatgacaagtgg 192  Q
    ||||||||| |||||||| || |||||||||||| |||||||||| ||||    
T  41387354 gtgtgctttttaaatccaaccgttgatcaccaattttaaatgacatgtgg 41387403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 192
Target Start/End: Complemental strand, 42632897 - 42632852
Alignment:
Q  147 gctttctaaatccagccattgatcaccaatcttaaatgacaagtgg 192  Q
    ||||| |||||||| || ||||||||||||||||||||||| ||||    
T  42632897 gctttttaaatccaaccgttgatcaccaatcttaaatgacacgtgg 42632852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 199
Target Start/End: Complemental strand, 48826033 - 48825952
Alignment:
Q  118 tatgttgttagttcattgtatatttgtgtgctttctaaatccagccattgatcaccaatcttaaatgacaagtggataaggg 199  Q
    |||||||| ||  ||||||||| |||||| ||||  ||| | | || ||||||||||||||||||||||| ||||| |||||    
T  48826033 tatgttgtgagcccattgtatacttgtgtacttttcaaacctaacccttgatcaccaatcttaaatgacatgtggacaaggg 48825952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 118 - 205
Target Start/End: Complemental strand, 2971920 - 2971833
Alignment:
Q  118 tatgttgttagttcattgtatatttgtgtgctttctaaatccagccattgatcaccaatcttaaatgacaagtggataaggggttaac 205  Q
    |||||||| |||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||| |||||||||||    
T  2971920 tatgttgtgagttcattttatatttgtgtgctttctaaatccagcccttgatcgccaatcttaaatgacacgtggacaaggggttaac 2971833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 111 - 207
Target Start/End: Original strand, 40812500 - 40812595
Alignment:
Q  111 atgatcctatgttgttagttcattgtatatttgtgtgctttctaaatccagccattgatcaccaatcttaaatgacaagtggataaggggttaacgg 207  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||||| | |||||||||| ||||||| ||||| ||||| ||  |||||||||    
T  40812500 atgattctatgttgtgagttcattgtatatttgtgtgctttctaaatccaacaattgatcacc-atcttaactgacatgtggacaaaaggttaacgg 40812595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 119 - 204
Target Start/End: Original strand, 21278114 - 21278199
Alignment:
Q  119 atgttgttagttcattgtatatttgtgtgctttctaaatccagccattgatcaccaatcttaaatgacaagtggataaggggttaa 204  Q
    ||||||| |||| |||||||||||||| ||  ||||||| ||| | ||||||||||||||||||||||| |||||||| |||||||    
T  21278114 atgttgtgagtttattgtatatttgtgcgccctctaaattcagtctttgatcaccaatcttaaatgacacgtggataaagggttaa 21278199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 118 - 199
Target Start/End: Original strand, 35684098 - 35684179
Alignment:
Q  118 tatgttgttagttcattgtatatttgtgtgctttctaaatccagccattgatcaccaatcttaaatgacaagtggataaggg 199  Q
    |||||||| || |||||||||| |||||| |||| |||||| |||| |||||| |||||||||||||||| ||||| |||||    
T  35684098 tatgttgtgagctcattgtatacttgtgtactttttaaatctagcccttgatctccaatcttaaatgacatgtggacaaggg 35684179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 187
Target Start/End: Complemental strand, 34531884 - 34531815
Alignment:
Q  118 tatgttgttagttcattgtatatttgtgtgctttctaaatccagccattgatcaccaatcttaaatgaca 187  Q
    |||||||| ||  |||||||||||||||| ||||  ||||| |||| |||||||||||||||||||||||    
T  34531884 tatgttgtgagcccattgtatatttgtgtacttttcaaatctagcccttgatcaccaatcttaaatgaca 34531815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 199
Target Start/End: Complemental strand, 48973419 - 48973338
Alignment:
Q  118 tatgttgttagttcattgtatatttgtgtgctttctaaatccagccattgatcaccaatcttaaatgacaagtggataaggg 199  Q
    |||||||| ||  ||||||||| |||||| ||||  ||||| |||| ||||||||||||||||||||||| ||||| |||||    
T  48973419 tatgttgtgagcccattgtatacttgtgtacttttcaaatctagcccttgatcaccaatcttaaatgacatgtggacaaggg 48973338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 118 - 192
Target Start/End: Original strand, 25889388 - 25889462
Alignment:
Q  118 tatgttgttagttcattgtatatttgtgtgctttctaaatccagccattgatcaccaatcttaaatgacaagtgg 192  Q
    |||||||| ||| ||||||||| ||||||  |||  ||||| |||| ||||||||||||||||||||||| ||||    
T  25889388 tatgttgtgagtccattgtatacttgtgtatttttcaaatctagcccttgatcaccaatcttaaatgacatgtgg 25889462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 25786164 - 25786119
Alignment:
Q  142 tgtgtgctttctaaatccagccattgatcaccaatcttaaatgaca 187  Q
    |||||||||| |||||||| || |||||||||||||||||||||||    
T  25786164 tgtgtgctttttaaatccaaccgttgatcaccaatcttaaatgaca 25786119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 187
Target Start/End: Original strand, 52181225 - 52181270
Alignment:
Q  142 tgtgtgctttctaaatccagccattgatcaccaatcttaaatgaca 187  Q
    |||||||||| |||||||| || |||||||||||||||||||||||    
T  52181225 tgtgtgctttttaaatccaaccgttgatcaccaatcttaaatgaca 52181270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 199
Target Start/End: Original strand, 48934990 - 48935086
Alignment:
Q  103 aaataaatatgatcctatgttgttagttcattgtatatttgtgtgctttctaaatccagccattgatcaccaatcttaaatgacaagtggataaggg 199  Q
    ||||||| |||||  |||||||| ||  ||||||||| |||||| ||||  ||||| |||| ||||||| ||||||||||||| | ||||| |||||    
T  48934990 aaataaaaatgattatatgttgtgagcccattgtatacttgtgtacttttcaaatctagcccttgatcatcaatcttaaatgatatgtggacaaggg 48935086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 47411368 - 47411418
Alignment:
Q  142 tgtgtgctttctaaatccagccattgatcaccaatcttaaatgacaagtgg 192  Q
    |||||||||| ||||| || || ||||||||||||||||||||||| ||||    
T  47411368 tgtgtgctttttaaattcaaccgttgatcaccaatcttaaatgacatgtgg 47411418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 172
Target Start/End: Complemental strand, 13641472 - 13641415
Alignment:
Q  115 tcctatgttgttagttcattgtatatttgtgtgctttctaaatccagccattgatcac 172  Q
    ||||||||| | |||||||||||||| |||| ||| ||||||||||||  ||||||||    
T  13641472 tcctatgttttgagttcattgtatatctgtgcgctctctaaatccagctcttgatcac 13641415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 31859786 - 31859741
Alignment:
Q  142 tgtgtgctttctaaatccagccattgatcaccaatcttaaatgaca 187  Q
    |||||| ||| |||||||||||||||||||| |||| |||||||||    
T  31859786 tgtgtgttttttaaatccagccattgatcacaaatcctaaatgaca 31859741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 241
Target Start/End: Complemental strand, 3978162 - 3978122
Alignment:
Q  201 ttaacggaaaggaccacaatagtaaacgactgaagaattat 241  Q
    |||||||| ||||||| ||||||||||||| ||||||||||    
T  3978162 ttaacggagaggaccaaaatagtaaacgacagaagaattat 3978122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 193
Target Start/End: Complemental strand, 13567358 - 13567318
Alignment:
Q  153 taaatccagccattgatcaccaatcttaaatgacaagtgga 193  Q
    |||||||||| ||||||||| |||| |||||||||||||||    
T  13567358 taaatccagctattgatcacaaatcctaaatgacaagtgga 13567318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 25787089 - 25787129
Alignment:
Q  147 gctttctaaatccagccattgatcaccaatcttaaatgaca 187  Q
    ||||| |||||||| || |||||||||||||||||||||||    
T  25787089 gctttttaaatccaaccgttgatcaccaatcttaaatgaca 25787129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 8096469 - 8096570
Alignment:
Q  127 agttcattgtatatttgtgtgctttctaaatccagccattgatcaccaatcttaaatgacaagtggataaggggttaacggaaaggaccacaatagtaaa 226  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| | | || ||| ||||| ||||||| |||||||||    
T  8096469 agtttattgtatatttgcgtgctttctaaatccagccattgatcaccaatcttaaatgacatgtgaacatggagttgacggagaggaccaaaatagtaaa 8096568  T
Q  227 cg 228  Q
    ||    
T  8096569 cg 8096570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 119 - 206
Target Start/End: Original strand, 36071273 - 36071360
Alignment:
Q  119 atgttgttagttcattgtatatttgtgtgctttctaaatccagccattgatcaccaatcttaaatgacaagtggataaggggttaacg 206  Q
    ||||||| || | |||||||||||||| ||  ||||||||||||| |||||||||||| |||||| ||| |||||||| |||||||||    
T  36071273 atgttgtgaggttattgtatatttgtgcgccctctaaatccagcccttgatcaccaattttaaataacacgtggataaagggttaacg 36071360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 187
Target Start/End: Original strand, 27750541 - 27750586
Alignment:
Q  142 tgtgtgctttctaaatccagccattgatcaccaatcttaaatgaca 187  Q
    |||||||||| |||||||| || ||||||||||||||||| |||||    
T  27750541 tgtgtgctttttaaatccaaccgttgatcaccaatcttaactgaca 27750586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 38590016 - 38589971
Alignment:
Q  142 tgtgtgctttctaaatccagccattgatcaccaatcttaaatgaca 187  Q
    |||||||||| ||||| || || |||||||||||||||||||||||    
T  38590016 tgtgtgctttttaaattcaaccgttgatcaccaatcttaaatgaca 38589971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 111 - 241
Target Start/End: Original strand, 14510417 - 14510547
Alignment:
Q  111 atgatcctatgttgttagttcattgtatatttgtgtgctttctaaatccagccattgatcaccaatcttaaatgacaagtggataaggggttaacggaaa 210  Q
    |||||| |||||||| ||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||  | || | |||||||||| | |    
T  14510417 atgatcatatgttgtgagtgcattgtatatttgtgtgctttctaaatccagtcattgatcatcaatcttaaatgacacatagacagggggttaacgaaga 14510516  T
Q  211 ggaccacaatagtaaacgactgaagaattat 241  Q
     ||| | ||||||||||| | ||||| ||||    
T  14510517 tgactaaaatagtaaacggcagaagagttat 14510547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 199
Target Start/End: Complemental strand, 33836990 - 33836909
Alignment:
Q  118 tatgttgttagttcattgtatatttgtgtgctttctaaatccagccattgatcaccaatcttaaatgacaagtggataaggg 199  Q
    |||||||| ||  ||||||||| |||||| ||||  ||||| |||| ||||||||||||||||||||||| ||||| |||||    
T  33836990 tatgttgtgagcccattgtatacttgtgtacttttcaaatctagcccttgatcaccaatcttaaatgacatgtggacaaggg 33836909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 203
Target Start/End: Complemental strand, 42246811 - 42246726
Alignment:
Q  118 tatgttgttagttcattgtatatttgtgtgctttctaaatccagccattgatcaccaatcttaaatgacaagtggataaggggtta 203  Q
    |||||||| ||||| |||||||| |||| |||||||||||||| || ||||||| | ||||||| ||| | |||||||| ||||||    
T  42246811 tatgttgtgagttcgttgtatatatgtgcgctttctaaatccaacccttgatcatccatcttaagtgatacgtggataatgggtta 42246726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 193
Target Start/End: Original strand, 6208969 - 6209036
Alignment:
Q  126 tagttcattgtatatttgtgtgctttctaaatccagccattgatcaccaatcttaaatgacaagtgga 193  Q
    |||| ||||||||| |||||| |||| |||||| | || ||||||||||||||||||||||| |||||    
T  6208969 tagtccattgtatacttgtgtactttttaaatctaacccttgatcaccaatcttaaatgacatgtgga 6209036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 199
Target Start/End: Complemental strand, 2305761 - 2305680
Alignment:
Q  118 tatgttgttagttcattgtatatttgtgtgctttctaaatccagccattgatcaccaatcttaaatgacaagtggataaggg 199  Q
    |||||||| ||  ||||||||| |||||| ||||  ||||| |||| |||||| |||||||||||||||| ||||| |||||    
T  2305761 tatgttgtgagcccattgtatacttgtgtacttttcaaatctagcccttgatctccaatcttaaatgacatgtggacaaggg 2305680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 199
Target Start/End: Complemental strand, 41312721 - 41312640
Alignment:
Q  118 tatgttgttagttcattgtatatttgtgtgctttctaaatccagccattgatcaccaatcttaaatgacaagtggataaggg 199  Q
    |||||||| ||| |||||||||  ||||| ||||  ||||| | || ||||||||||||||||||||||| ||||| |||||    
T  41312721 tatgttgtgagtccattgtatacctgtgtacttttcaaatctaacccttgatcaccaatcttaaatgacatgtggacaaggg 41312640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 199
Target Start/End: Complemental strand, 3665431 - 3665364
Alignment:
Q  132 attgtatatttgtgtgctttctaaatccagccattgatcaccaatcttaaatgacaagtggataaggg 199  Q
    |||||||| |||||| ||||  ||||| || | ||||||||||||||||||||||| ||||| |||||    
T  3665431 attgtatacttgtgtacttttcaaatctagtccttgatcaccaatcttaaatgacatgtggacaaggg 3665364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 118 - 205
Target Start/End: Complemental strand, 33458530 - 33458443
Alignment:
Q  118 tatgttgttagttcattgtatatttgtgtgctttctaaatccagccattgatcaccaatcttaaatgacaagtggataaggggttaac 205  Q
    |||||||| ||| ||||||||||||||| |||| |||||||||||| |||||||| |||||||||||||| ||||| |||||||||||    
T  33458530 tatgttgtaagtccattgtatatttgtgcgcttactaaatccagcccttgatcactaatcttaaatgacacgtggacaaggggttaac 33458443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 192
Target Start/End: Original strand, 30223872 - 30223946
Alignment:
Q  118 tatgttgttagttcattgtatatttgtgtgctttctaaatccagccattgatcaccaatcttaaatgacaagtgg 192  Q
    |||||||| ||| ||||||||| |||||| ||||  ||||| |||| ||||||||||||||||||||||| ||||    
T  30223872 tatgttgtgagtccattgtatacttgtgtacttttcaaatctagcccttgatcaccaatcttaaatgacatgtgg 30223946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 193
Target Start/End: Original strand, 35128112 - 35128163
Alignment:
Q  142 tgtgtgctttctaaatccagccattgatcaccaatcttaaatgacaagtgga 193  Q
    |||||||||| |||||||| || ||||||||||||||||||||||| |||||    
T  35128112 tgtgtgctttttaaatccaaccgttgatcaccaatcttaaatgacacgtgga 35128163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 118 - 192
Target Start/End: Complemental strand, 30222866 - 30222792
Alignment:
Q  118 tatgttgttagttcattgtatatttgtgtgctttctaaatccagccattgatcaccaatcttaaatgacaagtgg 192  Q
    |||||||| ||| ||||||||| |||||| ||||  ||||| || | ||||||||||||||||||||||| ||||    
T  30222866 tatgttgtgagtccattgtatacttgtgtacttttcaaatctagtccttgatcaccaatcttaaatgacatgtgg 30222792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 193
Target Start/End: Complemental strand, 41126446 - 41126385
Alignment:
Q  132 attgtatatttgtgtgctttctaaatccagccattgatcaccaatcttaaatgacaagtgga 193  Q
    |||||||| |||||| ||||  ||||| |||| ||||||||||||||||||||||| |||||    
T  41126446 attgtatacttgtgtacttttcaaatctagcccttgatcaccaatcttaaatgacatgtgga 41126385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 22060659 - 22060615
Alignment:
Q  142 tgtgtgctttctaaatccagccattgatcaccaatcttaaatgac 186  Q
    |||||||||| |||||||| || ||||||||||||||||||||||    
T  22060659 tgtgtgctttttaaatccaaccgttgatcaccaatcttaaatgac 22060615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 198
Target Start/End: Original strand, 36673731 - 36673811
Alignment:
Q  118 tatgttgttagttcattgtatatttgtgtgctttctaaatccagccattgatcaccaatcttaaatgacaagtggataagg 198  Q
    |||||||| ||  ||||||||| |||||| ||||  ||| | |||| ||||||||||||||||||||||| ||||| ||||    
T  36673731 tatgttgtgagcccattgtatacttgtgtacttttcaaacctagcccttgatcaccaatcttaaatgacatgtggacaagg 36673811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 22061715 - 22061765
Alignment:
Q  142 tgtgtgctttctaaatccagccattgatcaccaatcttaaatgacaagtgg 192  Q
    |||||||||| |||||||| || |||||| |||||||||||||||| ||||    
T  22061715 tgtgtgctttttaaatccaaccgttgatccccaatcttaaatgacacgtgg 22061765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 193
Target Start/End: Complemental strand, 7147000 - 7146924
Alignment:
Q  118 tatgttgttagttcattgtatatt-tgtgtgctttctaaatccagccattgatcaccaatcttaaatgacaagtgga 193  Q
    |||||||| ||||||| ||||  | |||||||||| |||||||| || || |||| ||||||||||||||| |||||    
T  7147000 tatgttgtaagttcatggtatgctatgtgtgctttttaaatccaaccgttcatcatcaatcttaaatgacatgtgga 7146924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 184
Target Start/End: Original strand, 41618364 - 41618460
Alignment:
Q  88 taagaaattcaatagaaataaatatgatcctatgttgttagttcattgtatatttgtgtgctttctaaatccagccattgatcaccaatcttaaatg 184  Q
    ||||||| |||| | ||||| | |||||  |||||||| ||  ||||||||| |||||| ||||  ||||| | || ||||||||||||||||||||    
T  41618364 taagaaaatcaagaaaaatagaaatgattatatgttgtgagcccattgtatacttgtgtacttttcaaatctaacccttgatcaccaatcttaaatg 41618460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 199
Target Start/End: Complemental strand, 47163379 - 47163291
Alignment:
Q  111 atgatcctatgttgttagttcattgtatatttgtgtgctttctaaatccagccattgatcaccaatcttaaatgacaagtggataaggg 199  Q
    |||||| |||||||| ||| ||||||||| ||| || ||||  ||||| |  | |||||||| |||||||||||||| ||||| |||||    
T  47163379 atgatcatatgttgtgagtccattgtatacttgcgtacttttcaaatctaatctttgatcacaaatcttaaatgacatgtggacaaggg 47163291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 193
Target Start/End: Complemental strand, 48671250 - 48671222
Alignment:
Q  165 ttgatcaccaatcttaaatgacaagtgga 193  Q
    |||||||||||||||||||||||||||||    
T  48671250 ttgatcaccaatcttaaatgacaagtgga 48671222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 118 - 187
Target Start/End: Original strand, 40059221 - 40059290
Alignment:
Q  118 tatgttgttagttcattgtatatttgtgtgctttctaaatccagccattgatcaccaatcttaaatgaca 187  Q
    |||||||| |||||||||||||| |||| ||||||||||||||||  ||||||| |||||||||||||||    
T  40059221 tatgttgtgagttcattgtatatgtgtgcgctttctaaatccagctcttgatcatcaatcttaaatgaca 40059290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 207
Target Start/End: Complemental strand, 26911379 - 26911290
Alignment:
Q  118 tatgttgttagttcattgtatatttgtgtgctttctaaatccagccattgatcaccaatcttaaatgacaagtggataaggggttaacgg 207  Q
    |||||||  |||||||| ||||| |||| |||||||||||||| || |||||||   ||||||| ||||| |||||||| ||||||||||    
T  26911379 tatgttgcgagttcattctatatatgtgcgctttctaaatccaacccttgatcattcatcttaagtgacacgtggataatgggttaacgg 26911290  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 193
Target Start/End: Original strand, 5062106 - 5062157
Alignment:
Q  142 tgtgtgctttctaaatccagccattgatcaccaatcttaaatgacaagtgga 193  Q
    |||||| ||| |||||||||||||||||||| |||| ||||||||| |||||    
T  5062106 tgtgtgttttttaaatccagccattgatcacaaatcctaaatgacatgtgga 5062157  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 185
Target Start/End: Complemental strand, 20988911 - 20988844
Alignment:
Q  118 tatgttgttagttcattgtatatttgtgtgctttctaaatccagccattgatcaccaatcttaaatga 185  Q
    |||||||| ||  ||||||||| |||||| ||||  ||||| |||| |||||||||||||||||||||    
T  20988911 tatgttgtgagcccattgtatacttgtgtacttttcaaatctagcctttgatcaccaatcttaaatga 20988844  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 15613689 - 15613644
Alignment:
Q  154 aaatccagccattgatcaccaatcttaaatgacaagtggataaggg 199  Q
    ||||| ||||||||||||| |||||||||||||| ||||| |||||    
T  15613689 aaatctagccattgatcacaaatcttaaatgacatgtggacaaggg 15613644  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 118 - 201
Target Start/End: Original strand, 40146528 - 40146611
Alignment:
Q  118 tatgttgttagttcattgtatatttgtgtgctttctaaatccagccattgatcaccaatcttaaatgacaagtggataaggggt 201  Q
    ||||||||  || ||||||||||||||| |||| |||||||||||| |||||||| || ||||||||||| ||||| |||||||    
T  40146528 tatgttgtgcgtccattgtatatttgtgcgcttgctaaatccagcccttgatcactaaacttaaatgacatgtggacaaggggt 40146611  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 192
Target Start/End: Original strand, 29834313 - 29834402
Alignment:
Q  103 aaataaatatgatcctatgttgttagttcattgtatatttgtgtgctttctaaatccagccattgatcaccaatcttaaatgacaagtgg 192  Q
    ||||||| |||||  |||||||| ||| ||||||||| |||||| ||||  ||||  |||| ||||||||||||||||||||||| ||||    
T  29834313 aaataaaaatgattatatgttgtgagtccattgtatacttgtgtacttttcaaatatagcccttgatcaccaatcttaaatgacatgtgg 29834402  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 199
Target Start/End: Original strand, 30671960 - 30672041
Alignment:
Q  118 tatgttgttagttcattgtatatttgtgtgctttctaaatccagccattgatcaccaatcttaaatgacaagtggataaggg 199  Q
    |||||||| ||  |||||||||||||||| ||||  ||||| |||| ||||||||||||||||||| ||| ||||| |||||    
T  30671960 tatgttgtgagcccattgtatatttgtgtacttttcaaatctagcccttgatcaccaatcttaaataacatgtggacaaggg 30672041  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 193
Target Start/End: Original strand, 1273353 - 1273404
Alignment:
Q  142 tgtgtgctttctaaatccagccattgatcaccaatcttaaatgacaagtgga 193  Q
    |||||||||| |||||||| || ||||||||||||||||||||||| |||||    
T  1273353 tgtgtgctttttaaatccaaccgttgatcaccaatcttaaatgacacgtgga 1273404  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 208
Target Start/End: Complemental strand, 4373598 - 4373508
Alignment:
Q  118 tatgttgttagttcattgtatatt-tgtgtgctttctaaatccagccattgatcaccaatcttaaatgacaagtggataaggggttaacgga 208  Q
    |||||||| ||| |||||||||   ||||||||||  ||||||||||||| |||||||||| ||||||||| ||||| ||| ||||||||||    
T  4373598 tatgttgtgagtccattgtataccatgtgtgcttttcaaatccagccattaatcaccaatcctaaatgacacgtgga-aagaggttaacgga 4373508  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 199
Target Start/End: Original strand, 15446532 - 15446643
Alignment:
Q  88 taagaaattcaatagaaataaatatgatcctatgttgttagttcattgtatatttgtgtgctttctaaatccagccattgatcaccaatcttaaatgaca 187  Q
    ||||||| |||| | ||||| | |||||| |||||||| ||  ||||||||  |||||| ||||  ||||| | || |||||||||||||||||||||||    
T  15446532 taagaaaatcaagaaaaatagaaatgatcatatgttgtgagcccattgtatggttgtgtacttttaaaatcaaacccttgatcaccaatcttaaatgaca 15446631  T
Q  188 agtggataaggg 199  Q
     ||||| |||||    
T  15446632 tgtggacaaggg 15446643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 118 - 192
Target Start/End: Complemental strand, 29833592 - 29833518
Alignment:
Q  118 tatgttgttagttcattgtatatttgtgtgctttctaaatccagccattgatcaccaatcttaaatgacaagtgg 192  Q
    |||||||| ||| ||||||||| |||||| ||||  ||||| |||| ||||||||||||||||| ||||| ||||    
T  29833592 tatgttgtgagtccattgtatacttgtgtacttttcaaatctagcccttgatcaccaatcttaattgacatgtgg 29833518  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 111 - 192
Target Start/End: Original strand, 47606488 - 47606570
Alignment:
Q  111 atgatcctatgttgttagttcattgtatattt-gtgtgctttctaaatccagccattgatcaccaatcttaaatgacaagtgg 192  Q
    |||||| |||||||| |||| |||||| |||| ||||||||| |||||||| || ||||||||||||| ||| ||||| ||||    
T  47606488 atgatcatatgttgtgagtttattgtaaattttgtgtgctttttaaatccaacccttgatcaccaatcctaagtgacacgtgg 47606570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 203
Target Start/End: Complemental strand, 48206380 - 48206295
Alignment:
Q  118 tatgttgttagttcattgtatatttgtgtgctttctaaatccagccattgatcaccaatcttaaatgacaagtggataaggggtta 203  Q
    |||||||| | |||||||||||| |||| |||||||||||| | |  ||||||| | ||||||| ||||| |||||||| ||||||    
T  48206380 tatgttgtgaattcattgtatatatgtgcgctttctaaatctaactcttgatcatccatcttaagtgacatgtggataatgggtta 48206295  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 193
Target Start/End: Original strand, 33377284 - 33377335
Alignment:
Q  142 tgtgtgctttctaaatccagccattgatcaccaatcttaaatgacaagtgga 193  Q
    |||||||||| |||||||| || |||||||||||||||||| |||| |||||    
T  33377284 tgtgtgctttttaaatccaaccgttgatcaccaatcttaaacgacacgtgga 33377335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 193
Target Start/End: Original strand, 44128254 - 44128305
Alignment:
Q  142 tgtgtgctttctaaatccagccattgatcaccaatcttaaatgacaagtgga 193  Q
    |||||||||| |||||||| || ||||||||||||||| ||||||| |||||    
T  44128254 tgtgtgctttttaaatccaaccgttgatcaccaatcttgaatgacatgtgga 44128305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 193
Target Start/End: Original strand, 55953772 - 55953823
Alignment:
Q  142 tgtgtgctttctaaatccagccattgatcaccaatcttaaatgacaagtgga 193  Q
    |||||||||| ||||| || || ||||||||||||||||||||||| |||||    
T  55953772 tgtgtgctttttaaattcaaccgttgatcaccaatcttaaatgacacgtgga 55953823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 187
Target Start/End: Original strand, 23153157 - 23153226
Alignment:
Q  118 tatgttgttagttcattgtatatttgtgtgctttctaaatccagccattgatcaccaatcttaaatgaca 187  Q
    |||||||| ||||||||||||| ||||||| |||  ||||||| || |||||||  |||| |||||||||    
T  23153157 tatgttgtgagttcattgtataattgtgtgtttttcaaatccaacccttgatcattaatcctaaatgaca 23153226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 186
Target Start/End: Original strand, 526614 - 526682
Alignment:
Q  118 tatgttgttagttcattgtatatttgtgtgctttctaaatccagccattgatcaccaatcttaaatgac 186  Q
    |||||||| ||  ||||||||| |||||| ||||  ||||  |||| ||||||||||||||||||||||    
T  526614 tatgttgtgagcccattgtatacttgtgtacttttcaaatttagcccttgatcaccaatcttaaatgac 526682  T

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Target: scaffold0178 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 204
Target Start/End: Original strand, 2160 - 2246
Alignment:
Q  118 tatgttgttagttcattgtatatttgtgtgctttctaaatccagccattgatcaccaatcttaaatgacaagtggataaggggttaa 204  Q
    |||||| | |||||||||||||| |||| ||| |||||||||| || ||||||| | ||||||| ||||| |||||||| |||||||    
T  2160 tatgttttgagttcattgtatatatgtgcgctctctaaatccaacccttgatcatccatcttaagtgacacgtggataatgggttaa 2246  T

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Target: scaffold0177 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 192
Target Start/End: Complemental strand, 1975 - 1901
Alignment:
Q  118 tatgttgttagttcattgtatatttgtgtgctttctaaatccagccattgatcaccaatcttaaatgacaagtgg 192  Q
    |||||||| || |||||||||| |||||| ||||  ||||| |||| ||||||  ||||||||||||||| ||||    
T  1975 tatgttgtgagctcattgtatacttgtgtacttttcaaatctagcccttgatcttcaatcttaaatgacatgtgg 1901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 458392 - 458436
Alignment:
Q  154 aaatccagccattgatcaccaatcttaaatgacaagtggataagg 198  Q
    ||||| |||| ||||||||||||||||||||||| ||||| ||||    
T  458392 aaatctagcccttgatcaccaatcttaaatgacatgtggacaagg 458436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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