View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8511_low_90 (Length: 249)

Name: NF8511_low_90
Description: NF8511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8511_low_90
NF8511_low_90
[»] chr6 (2 HSPs)
chr6 (72-241)||(21691093-21691262)
chr6 (93-203)||(21728116-21728226)
[»] chr4 (3 HSPs)
chr4 (1-86)||(25986993-25987078)
chr4 (17-86)||(7701533-7701603)
chr4 (1-67)||(354714-354781)
[»] chr7 (1 HSPs)
chr7 (17-95)||(21883770-21883849)
[»] chr2 (1 HSPs)
chr2 (1-96)||(21509435-21509531)
[»] chr3 (1 HSPs)
chr3 (23-96)||(21188821-21188895)
[»] scaffold0013 (1 HSPs)
scaffold0013 (56-96)||(3572-3612)


Alignment Details
Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 72 - 241
Target Start/End: Original strand, 21691093 - 21691262
Alignment:
Q  72 gtctcaacatctcaacatacatcatgggtttgagtagcctttaaaatatacaaattaagatataacaccatttttcataaaatc-cagtatgaaataata 170  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||  ||||||||||||||    
T  21691093 gtctcaacatctcaacatacatcatgggtttgagtagcttttaaaatatac-aataaagatataacaccatttttcataaaatctaagtatgaaataata 21691191  T
Q  171 tttacaatcttgctaccgctacttattccacacnnnnnnnnctttccagaaatcgggtatagaagtataat 241  Q
    ||||||| |||||||||||||||||||||||||        ||||||||||||||||||||||||||||||    
T  21691192 tttacaaccttgctaccgctacttattccacacttttttttctttccagaaatcgggtatagaagtataat 21691262  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 93 - 203
Target Start/End: Original strand, 21728116 - 21728226
Alignment:
Q  93 tcatgggtttgagtagcctttaaaatatacaaattaagatataacaccatttttcataaaatccagtatgaaataatatttacaatcttgctaccgctac 192  Q
    |||||| ||| ||||||  || ||||||||||||| |||||||||||||| |||  ||||||| |||||||||||||||||||||  ||||||| |||||    
T  21728116 tcatggatttaagtagcgattcaaatatacaaatttagatataacaccatatttgttaaaatcaagtatgaaataatatttacaactttgctacggctac 21728215  T
Q  193 ttattccacac 203  Q
    ||||| |||||    
T  21728216 ttatttcacac 21728226  T

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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 25987078 - 25986993
Alignment:
Q  1 catgcataattcattttcataatcataaaacaaacgcagcggattcataaagtaaacaacataaaaccatcgtctcaacatctcaa 86  Q
    ||||||||| ||||||||||||||||||||    |||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  25987078 catgcataaatcattttcataatcataaaatggtcgcaacgaattcataaagtaaacaacataaaaccatcgtctcaacatctcaa 25986993  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 7701533 - 7701603
Alignment:
Q  17 tcataatcataaaacaaacgcagcggattcataaagtaaacaacat-aaaaccatcgtctcaacatctcaa 86  Q
    ||||||||||||||||  |||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  7701533 tcataatcataaaacagtcgcagcggattcataaagtaaacaacataaaaatcatcgtctcaacatctcaa 7701603  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 354714 - 354781
Alignment:
Q  1 catgcataattcattttcataatcataaaacaaacgcagcggattcataaagt-aaacaacataaaac 67  Q
    ||||||||||||||||||||||| ||||||||  |||| | |||||||||||| ||||||||||||||    
T  354714 catgcataattcattttcataattataaaacagtcgcaacagattcataaagtaaaacaacataaaac 354781  T

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Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 21883770 - 21883849
Alignment:
Q  17 tcataatcataaaacaaacgcagcggattcataaagt-aaacaacataaaaccatcgtctcaacatctcaacatacatca 95  Q
    ||||||||||||||||  ||||||||||||||||||| ||||||||||||| |||||||||||||| |||| ||||||||    
T  21883770 tcataatcataaaacagtcgcagcggattcataaagtaaaacaacataaaatcatcgtctcaacatatcaaaatacatca 21883849  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 21509531 - 21509435
Alignment:
Q  1 catgcataattcattttcataatcataaaacaaacgcagcggattcataaagt-aaacaacataaaaccatcgtctcaacatctcaacatacatcat 96  Q
    ||||||||||||||||| | |||||| |||||   |||||||||| ||||| | ||| |||||||||||||||||| || |||||||  ||||||||    
T  21509531 catgcataattcatttttaaaatcatcaaacagttgcagcggatttataaaataaaagaacataaaaccatcgtcttaaaatctcaaggtacatcat 21509435  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 96
Target Start/End: Complemental strand, 21188895 - 21188821
Alignment:
Q  23 tcataaaacaaacgcagcggattcataaagt-aaacaacataaaaccatcgtctcaacatctcaacatacatcat 96  Q
    ||||||||||  |||| |||||||||||||| ||||||||| ||| ||| ||||| ||||||||| |||| ||||    
T  21188895 tcataaaacagtcgcaacggattcataaagtaaaacaacatgaaatcattgtctcgacatctcaaaatacgtcat 21188821  T

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Target: scaffold0013 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 3612 - 3572
Alignment:
Q  56 acaacataaaaccatcgtctcaacatctcaacatacatcat 96  Q
    ||||||||||  ||||||||||||||||||| |||||||||    
T  3612 acaacataaattcatcgtctcaacatctcaagatacatcat 3572  T

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