View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8511_low_96 (Length: 239)
Name: NF8511_low_96
Description: NF8511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8511_low_96 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 17 - 229
Target Start/End: Complemental strand, 34509300 - 34509088
Alignment:
| Q |
17 |
actatcaccgccaaatccgccggagtcattatgagggagggtggagaggcgagaatgacggatgcacagttgagggaagagagatggaaagcggttaaat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34509300 |
actatcaccgccaaatccgccggagtcattatgagggagggtggagaggcgagaatgacggatgcacagttgagggaagagagatggaaagcggttaaat |
34509201 |
T |
|
| Q |
117 |
gaaggaaacgaaggagagggtgtagttggaaattgaaggggggtgagtttaggaaaaatgttgaaggagcgggatagcagaagggggttacgggttagcg |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34509200 |
gaaggaaacgaaggagagggtgtagttggaaattgaaggggggtgggtttaggaaaaatgttgaaggagcgggatagcagaagggggttacgggttagcg |
34509101 |
T |
|
| Q |
217 |
cgcaatatgcacc |
229 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
34509100 |
cacaatatgcacc |
34509088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 17 - 229
Target Start/End: Complemental strand, 34515681 - 34515469
Alignment:
| Q |
17 |
actatcaccgccaaatccgccggagtcattatgagggagggtggagaggcgagaatgacggatgcacagttgagggaagagagatggaaagcggttaaat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34515681 |
actatcaccgccaaatccgccggagtcattatgagggagggtggagaggcgagaatgacggatgcacagttgagggaagagagatggaaagcggttaaat |
34515582 |
T |
|
| Q |
117 |
gaaggaaacgaaggagagggtgtagttggaaattgaaggggggtgagtttaggaaaaatgttgaaggagcgggatagcagaagggggttacgggttagcg |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34515581 |
gaaggaaacgaaggagagggtgtagttggaaattgaaggggggtgggtttaggaaaaatgttgaaggagcgggatagcagaagggggttacgggttagcg |
34515482 |
T |
|
| Q |
217 |
cgcaatatgcacc |
229 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
34515481 |
cacaatatgcacc |
34515469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 149 - 239
Target Start/End: Complemental strand, 34515364 - 34515271
Alignment:
| Q |
149 |
ttgaaggggggtgagtttaggaaaaatgttgaaggagcgggata---gcagaagggggttacgggttagcgcgcaatatgcacctgcaccgatc |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34515364 |
ttgaaggggggtgagtttaggaaaaatgttgaaggagcgggatagcagcagaagggggttacgggttaacgcgcaatatgcacctgcaccgatc |
34515271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 214
Target Start/End: Complemental strand, 34522044 - 34521961
Alignment:
| Q |
134 |
gggtgtagttggaaattgaaggggggtg---agtttaggaaaaatgttgaaggagcgggatagcagaagggggttacgggttag |
214 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||| |||| ||| | ||| ||||||||||| |||||||||||| ||||||| |
|
|
| T |
34522044 |
gggtgttgttggaaattgaaggggggtgggcggttgaggagaaaaggtgacggagcgggataacagaagggggttttgggttag |
34521961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University