View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8511_low_97 (Length: 239)

Name: NF8511_low_97
Description: NF8511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8511_low_97
NF8511_low_97
[»] chr6 (4 HSPs)
chr6 (1-166)||(14326466-14326631)
chr6 (1-166)||(14419476-14419641)
chr6 (16-166)||(21283261-21283416)
chr6 (79-164)||(16269374-16269459)
[»] chr3 (4 HSPs)
chr3 (1-166)||(23560764-23560929)
chr3 (12-165)||(12060971-12061124)
chr3 (36-162)||(48866539-48866667)
chr3 (94-163)||(48866644-48866714)
[»] chr8 (5 HSPs)
chr8 (12-165)||(8096183-8096336)
chr8 (20-166)||(39567666-39567812)
chr8 (16-166)||(45377721-45377871)
chr8 (83-164)||(13366123-13366204)
chr8 (94-166)||(39270195-39270267)
[»] chr1 (4 HSPs)
chr1 (1-166)||(40812236-40812401)
chr1 (1-162)||(2972035-2972196)
chr1 (16-166)||(16962717-16962868)
chr1 (16-163)||(51598589-51598738)
[»] chr4 (6 HSPs)
chr4 (1-163)||(40145392-40145555)
chr4 (16-166)||(16038859-16039009)
chr4 (16-166)||(35055944-35056094)
chr4 (60-163)||(756826-756929)
chr4 (60-163)||(702273-702376)
chr4 (60-163)||(770572-770675)
[»] scaffold0122 (1 HSPs)
scaffold0122 (12-166)||(16858-17012)
[»] chr2 (1 HSPs)
chr2 (12-166)||(14510152-14510307)
[»] chr7 (3 HSPs)
chr7 (16-166)||(21709885-21710036)
chr7 (60-163)||(26025518-26025621)
chr7 (98-163)||(33458702-33458767)
[»] scaffold0031 (2 HSPs)
scaffold0031 (60-163)||(123761-123864)
scaffold0031 (60-118)||(134632-134690)


Alignment Details
Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 14326466 - 14326631
Alignment:
Q  1 ttgttcatccccttccctctttgttcatcttctcatcttccaatctttcataaaaaactcattttcgaattccaatccttcatcatcagcattaatcctt 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14326466 ttgttcatccccttccctctttgttcatcttctcttcttccaatctttcataaaaaactcattttcgaattccaatccttcatcatcagcattaatcctt 14326565  T
Q  101 tcatattccaatctaaacccatttctgaatctaatctaaacacttccaaattccaatctaaaccca 166  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||    
T  14326566 tcatattccaatctaaacccatttttggatctaatctaaacacttccaaatcccaatctaaaccca 14326631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 14419476 - 14419641
Alignment:
Q  1 ttgttcatccccttccctctttgttcatcttctcatcttccaatctttcataaaaaactcattttcgaattccaatccttcatcatcagcattaatcctt 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14419476 ttgttcatccccttccctctttgttcatcttctcttcttccaatctttcataaaaaactcattttcgaattccaatccttcatcatcagcattaatcctt 14419575  T
Q  101 tcatattccaatctaaacccatttctgaatctaatctaaacacttccaaattccaatctaaaccca 166  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||    
T  14419576 tcatattccaatctaaacccatttttggatctaatctaaacacttccaaatcccaatctaaaccca 14419641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 166
Target Start/End: Original strand, 21283261 - 21283416
Alignment:
Q  16 cctctttgttcatcttctcatcttccaatctttcataaaaaa-ctcattttcgaattccaatccttcatcatca---gcatta-atcctttcatattcca 110  Q
    ||||||||||| | ||||| |||||||||||||||||||||| |||||||||||||  ||||| ||||| ||||   ||| || ||||||||| ||||||    
T  21283261 cctctttgttcctattctcttcttccaatctttcataaaaaaactcattttcgaatgtcaatcattcattatcaatagcaatatatcctttcaaattcca 21283360  T
Q  111 atctaaacccatttctgaatctaatctaaacacttccaaattccaatctaaaccca 166  Q
    ||||||||||| || || ||||||||||||  ||||||||| ||||||||||||||    
T  21283361 atctaaacccaattttggatctaatctaaattcttccaaatcccaatctaaaccca 21283416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 164
Target Start/End: Complemental strand, 16269459 - 16269374
Alignment:
Q  79 ttcatcatcagcattaatcctttcatattccaatctaaacccatttctgaatctaatctaaacacttccaaattccaatctaaacc 164  Q
    |||||||||  ||| |||||||||| |||||||| |||||  |||| |  ||||||||||||| ||| ||||||||||||||||||    
T  16269459 ttcatcatctacatcaatcctttcaaattccaatataaacaaatttttagatctaatctaaacccttacaaattccaatctaaacc 16269374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 126; Significance: 4e-65; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 23560929 - 23560764
Alignment:
Q  1 ttgttcatccccttccctctttgttcatcttctcatcttccaatctttcataaaaaactcattttcgaattccaatccttcatcatcagcattaatcctt 100  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||| || ||||||||||    
T  23560929 ttgttcatccccttccttctttgttcatcttctcttcttccaatctttcatacaaaactcattttcgaattccaatcattcatcattagtattaatcctt 23560830  T
Q  101 tcatattccaatctaaacccatttctgaatctaatctaaacacttccaaattccaatctaaaccca 166  Q
    |||||||||||||||||||||||| || ||||||||||||||||| |||||||||||| |||||||    
T  23560829 tcatattccaatctaaacccatttttggatctaatctaaacactttcaaattccaatccaaaccca 23560764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 12 - 165
Target Start/End: Original strand, 12060971 - 12061124
Alignment:
Q  12 cttccctctttgttcatcttctcatcttccaatctttcataaaaaactcattttcgaattccaatccttcatcatcagcattaatcctttcatattccaa 111  Q
    ||||||||||||||||| ||| | ||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||| ||||||||||||||| ||    
T  12060971 cttccctctttgttcatgttcacttcttccaatctttcataaaaaactctttttcgaattacaatccttcatcatcaacatcaatcctttcatattctaa 12061070  T
Q  112 tctaaacccatttctgaatctaatctaaacacttccaaattccaatctaaaccc 165  Q
    |||||| |||||| || ||||||||||||| ||||||||| |||||||||||||    
T  12061071 tctaaatccatttttggatctaatctaaactcttccaaatcccaatctaaaccc 12061124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 36 - 162
Target Start/End: Original strand, 48866539 - 48866667
Alignment:
Q  36 tcttccaatctttcataaaa-aactcattttcgaattccaatccttcatcatcagcattaatcctttcatattccaatct-aaacccatttctgaatcta 133  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||| ||| |||||| |||||||||| || |||||    
T  48866539 tcttccaatctttcataaaaaaactcattttcgaattccaatccttcatcatcaacatcaatcctttcaaatttcaatctaaaacccatttttggatcta 48866638  T
Q  134 atctaaacacttccaaattccaatctaaa 162  Q
    |||||||  ||| |||||| |||||||||    
T  48866639 atctaaatcctttcaaatttcaatctaaa 48866667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 163
Target Start/End: Original strand, 48866644 - 48866714
Alignment:
Q  94 aatcctttcatattccaatctaaa-cccatttctgaatctaatctaaacacttccaaattccaatctaaac 163  Q
    |||||||||| ||| ||||||||| ||||||| || ||||||||||||| |||||||||| |||| |||||    
T  48866644 aatcctttcaaatttcaatctaaaacccatttttggatctaatctaaacccttccaaatttcaatttaaac 48866714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 4e-53; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 12 - 165
Target Start/End: Complemental strand, 8096336 - 8096183
Alignment:
Q  12 cttccctctttgttcatcttctcatcttccaatctttcataaaaaactcattttcgaattccaatccttcatcatcagcattaatcctttcatattccaa 111  Q
    ||||||||||||||||| ||| | ||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||| ||||||||||||||||||    
T  8096336 cttccctctttgttcatgttcacttcttccaatctttcataaaaaactctttttcgaattacaatccttcatcatcaacatcaatcctttcatattccaa 8096237  T
Q  112 tctaaacccatttctgaatctaatctaaacacttccaaattccaatctaaaccc 165  Q
    |||||| |||||| || ||||||||||||| ||||||||| |||||||||||||    
T  8096236 tctaaatccatttttggatctaatctaaactcttccaaatcccaatctaaaccc 8096183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 20 - 166
Target Start/End: Complemental strand, 39567812 - 39567666
Alignment:
Q  20 tttgttcatcttctcatcttccaatctttcataaaaaactcattttcgaattccaatccttcatcatcagcattaatcctttcatattccaatctaaacc 119  Q
    ||||||| | ||||| |||||||||||||||||||||||||||||| |||| |||||| ||||||||||  || |||||||||| |||||||||||||||    
T  39567812 tttgttcctgttctcttcttccaatctttcataaaaaactcatttttgaatgccaatcattcatcatcaatatcaatcctttcaaattccaatctaaacc 39567713  T
Q  120 catttctgaatctaatctaaacacttccaaattccaatctaaaccca 166  Q
    ||||| || ||||||||||||  ||||||||| ||||||||||||||    
T  39567712 catttttggatctaatctaaattcttccaaatcccaatctaaaccca 39567666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 16 - 166
Target Start/End: Complemental strand, 45377871 - 45377721
Alignment:
Q  16 cctctttgttcatcttctcatcttccaatctttcataaaaaactcattttcgaattccaatccttcatcatcagcattaatcctttcatattccaatcta 115  Q
    ||||||||||| | ||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||  || |||||||||| |||||||||||    
T  45377871 cctctttgttcctgttctcttcttccaatctttcataaaaaactcattttcgaatgccaatcattcatcatcaatatcaatcctttcaaattccaatcta 45377772  T
Q  116 aacccatttctgaatctaatctaaacacttccaaattccaatctaaaccca 166  Q
    ||| ||||| || ||||||| ||||  ||| ||||| |||||| |||||||    
T  45377771 aactcatttttggatctaatttaaattctttcaaatcccaatccaaaccca 45377721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 13366123 - 13366204
Alignment:
Q  83 tcatcagcattaatcctttcatattccaatctaaacccatttctgaatctaatctaaacacttccaaattccaatctaaacc 164  Q
    |||||| ||| ||||||||||||||||||||||||| ||||| || ||||||||||||| ||||||||||||||||||||||    
T  13366123 tcatcaacatcaatcctttcatattccaatctaaactcatttttggatctaatctaaacccttccaaattccaatctaaacc 13366204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 94 - 166
Target Start/End: Original strand, 39270195 - 39270267
Alignment:
Q  94 aatcctttcatattccaatctaaacccatttctgaatctaatctaaacacttccaaattccaatctaaaccca 166  Q
    |||||||||| |||||||||||||| ||||| |||||||||||||||  ||||||||| ||||||||||||||    
T  39270195 aatcctttcaaattccaatctaaactcatttttgaatctaatctaaattcttccaaatcccaatctaaaccca 39270267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 102; Significance: 9e-51; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 40812401 - 40812236
Alignment:
Q  1 ttgttcatccccttccctctttgttcatcttctcatcttccaatctttcataaaaaactcattttcgaattccaatccttcatcatcagcattaatcctt 100  Q
    |||||||| | ||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||| |||||||    
T  40812401 ttgttcattctcttccctctttgttcctgttctcatcttccaatctttcacaaaaaactcattttcgaattccaattcttcatcatcaacatcaatcctt 40812302  T
Q  101 tcatattccaatctaaacccatttctgaatctaatctaaacacttccaaattccaatctaaaccca 166  Q
    ||| ||||||||||||||| |||| || ||||||||||||  ||||||||| ||||| ||||||||    
T  40812301 tcacattccaatctaaacctatttttggatctaatctaaatccttccaaatcccaatttaaaccca 40812236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 2972035 - 2972196
Alignment:
Q  1 ttgttcatccccttccctctttgttcatcttctcatcttccaatctttcataaaaaactcattttcgaattccaatccttcatcatcagcattaatcctt 100  Q
    |||||||| | | ||| ||||||||||| || || |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||    
T  2972035 ttgttcattctcctccttctttgttcatgttttcttcttccaatctttcataaaaaactcattttcgaattccaatcattcatcatcaacatcaatcctt 2972134  T
Q  101 tcatattccaatctaaacccatttctgaatctaatctaaacacttccaaattccaatctaaa 162  Q
    ||| | |||||||||||||||||| || ||||||||||||| ||||||||||||||| ||||    
T  2972135 tcaaagtccaatctaaacccatttttggatctaatctaaacccttccaaattccaatataaa 2972196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 166
Target Start/End: Original strand, 16962717 - 16962868
Alignment:
Q  16 cctctttgttcatcttctcatcttccaatctttcataaaa-aactcattttcgaattccaatccttcatcatcagcattaatcctttcatattccaatct 114  Q
    ||||||||||  | ||||| |||||||||||||||||||| |||||||||| |||| |||||| ||||||||||  || |||||||||| ||| ||||||    
T  16962717 cctctttgtttctgttctcttcttccaatctttcataaaaaaactcatttttgaatgccaatcattcatcatcaatatcaatcctttcaaatttcaatct 16962816  T
Q  115 aaacccatttctgaatctaatctaaacacttccaaattccaatctaaaccca 166  Q
    |||||||||| || ||||||||||||  ||||||||| ||||||||||||||    
T  16962817 aaacccatttttggatctaatctaaattcttccaaatcccaatctaaaccca 16962868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 163
Target Start/End: Complemental strand, 51598738 - 51598589
Alignment:
Q  16 cctctttgttcatcttctcatcttccaatctttcataaaaaa--ctcattttcgaattccaatccttcatcatcagcattaatcctttcatattccaatc 113  Q
    ||||||||||| | ||||| ||||||||||||||||||||||  ||||||||||||| |||||| ||||||||||  |  |||||||||| |||||||||    
T  51598738 cctctttgttcctgttctcttcttccaatctttcataaaaaaaactcattttcgaatgccaatcattcatcatcaatagcaatcctttcaaattccaatc 51598639  T
Q  114 taaacccatttctgaatctaatctaaacacttccaaattccaatctaaac 163  Q
    |||| |||||| || ||||||||||||  ||||||||| |||||||||||    
T  51598638 taaatccatttttggatctaatctaaattcttccaaatcccaatctaaac 51598589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 40145555 - 40145392
Alignment:
Q  1 ttgttcatccccttccctctttgttcatcttctcatcttccaatctttcataaa-aaactcattttcgaattccaatccttcatcatcagcattaatcct 99  Q
    |||||||| | | ||||||||||||||| || || | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  40145555 ttgttcattctcctccctctttgttcatgttttctttttccaatctttcataaataaactcattttcgaattccaatccttcatcatcagcatcaatcct 40145456  T
Q  100 ttcatattccaatctaaacccatttctgaatctaatctaaacacttccaaattccaatctaaac 163  Q
    |||| |||||||||||||||||||| || ||||||| ||||| ||||||||||||||| |||||    
T  40145455 ttcaaattccaatctaaacccatttatggatctaatttaaactcttccaaattccaatttaaac 40145392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 16 - 166
Target Start/End: Complemental strand, 16039009 - 16038859
Alignment:
Q  16 cctctttgttcatcttctcatcttccaatctttcataaaaaactcattttcgaattccaatccttcatcatcagcattaatcctttcatattccaatcta 115  Q
    ||||||||||||| ||||| |||||||||||||||||||||||| ||||| |||| |||||| |||||| |||  || |||||||||| |||| ||||||    
T  16039009 cctctttgttcatgttctcttcttccaatctttcataaaaaactaatttttgaatgccaatcattcatcgtcaatatcaatcctttcaaattcaaatcta 16038910  T
Q  116 aacccatttctgaatctaatctaaacacttccaaattccaatctaaaccca 166  Q
    |||| |||| || ||||||||||||  ||||||||| ||||||||||||||    
T  16038909 aaccgatttttggatctaatctaaattcttccaaatcccaatctaaaccca 16038859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 16 - 166
Target Start/End: Complemental strand, 35056094 - 35055944
Alignment:
Q  16 cctctttgttcatcttctcatcttccaatctttcataaaaaactcattttcgaattccaatccttcatcatcagcattaatcctttcatattccaatcta 115  Q
    ||||||||||| | ||||| |||||||||||||||||||||||||||||| ||||  ||||| ||||||||||  || |||||||||| |||| ||||||    
T  35056094 cctctttgttcctgttctcttcttccaatctttcataaaaaactcatttttgaatgtcaatcattcatcatcaatatcaatcctttcaaattctaatcta 35055995  T
Q  116 aacccatttctgaatctaatctaaacacttccaaattccaatctaaaccca 166  Q
    |||| |||| || ||||||||||||  ||||||||| ||||||||||||||    
T  35055994 aacctatttttggatctaatctaaattcttccaaatcccaatctaaaccca 35055944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 60 - 163
Target Start/End: Original strand, 756826 - 756929
Alignment:
Q  60 cattttcgaattccaatccttcatcatcagcattaatcctttcatattccaatctaaacccatttctgaatctaatctaaacacttccaaattccaatct 159  Q
    |||||||||||  ||||| ||||||||||  |  |||||||||| |||||||||||||||||||| || ||||||||||||  ||||||||| |||||||    
T  756826 cattttcgaatgtcaatcattcatcatcaatagcaatcctttcaaattccaatctaaacccatttttggatctaatctaaattcttccaaatcccaatct 756925  T
Q  160 aaac 163  Q
    ||||    
T  756926 aaac 756929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 60 - 163
Target Start/End: Complemental strand, 702376 - 702273
Alignment:
Q  60 cattttcgaattccaatccttcatcatcagcattaatcctttcatattccaatctaaacccatttctgaatctaatctaaacacttccaaattccaatct 159  Q
    ||||||||||| |||||| ||||||||||  |  |||||||||| |||||||||||||| ||||| || ||||||||||||  ||||||||| | |||||    
T  702376 cattttcgaatgccaatcattcatcatcaatagcaatcctttcaaattccaatctaaactcatttttggatctaatctaaattcttccaaatcctaatct 702277  T
Q  160 aaac 163  Q
    ||||    
T  702276 aaac 702273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 60 - 163
Target Start/End: Complemental strand, 770675 - 770572
Alignment:
Q  60 cattttcgaattccaatccttcatcatcagcattaatcctttcatattccaatctaaacccatttctgaatctaatctaaacacttccaaattccaatct 159  Q
    ||||||||||| |||||| ||||||||||  |  |||||||||| |||||||||||||| ||||| || ||||||||||||  ||||||||| | |||||    
T  770675 cattttcgaatgccaatcattcatcatcaatagcaatcctttcaaattccaatctaaactcatttttggatctaatctaaattcttccaaatcctaatct 770576  T
Q  160 aaac 163  Q
    ||||    
T  770575 aaac 770572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 12 - 166
Target Start/End: Complemental strand, 17012 - 16858
Alignment:
Q  12 cttccctctttgttcatcttctcatcttccaatctttcataaaaaactcattttcgaattccaatccttcatcatcagcattaatcctttcatattccaa 111  Q
    ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||  || ||||||||||||||||||    
T  17012 cttccttctttgttcatgttctcttcttccaatctttcataaaaaactcatttttaaattccaatccttcatcatcaatatcaatcctttcatattccaa 16913  T
Q  112 tctaaacccatttctgaatctaatctaaacacttccaaattccaatctaaaccca 166  Q
    ||||||| ||||| || || |||||||||| ||||||||| ||||| || |||||    
T  16912 tctaaactcatttttggatgtaatctaaacccttccaaatcccaatatataccca 16858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 12 - 166
Target Start/End: Complemental strand, 14510307 - 14510152
Alignment:
Q  12 cttccctctttgttcatcttctcatcttccaatctttcataaaaaa-ctcattttcgaattccaatccttcatcatcagcattaatcctttcatattcca 110  Q
    ||||| ||||||||||| ||||| |||||||||||||||||||||| ||||||||| |||||||||| |||| ||||| ||| |||||||||||||||||    
T  14510307 cttccttctttgttcatgttctcttcttccaatctttcataaaaaaactcattttcaaattccaatctttcaccatcaacatcaatcctttcatattcca 14510208  T
Q  111 atctaaacccatttctgaatctaatctaaacacttccaaattccaatctaaaccca 166  Q
    |||||||| ||||| || ||||||||||||  ||||||| | ||||||||||||||    
T  14510207 atctaaactcatttttggatctaatctaaatccttccaactcccaatctaaaccca 14510152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 16 - 166
Target Start/End: Original strand, 21709885 - 21710036
Alignment:
Q  16 cctctttgttcatcttctcatcttccaatctttcataaaa-aactcattttcgaattccaatccttcatcatcagcattaatcctttcatattccaatct 114  Q
    ||||||||||| | ||||| |||||||||||||||||||| ||||||||||||||| |||||| ||||||||||  |  |||||||||| ||||||||||    
T  21709885 cctctttgttcctgttctcttcttccaatctttcataaaaaaactcattttcgaatgccaatcattcatcatcaatagcaatcctttcaaattccaatct 21709984  T
Q  115 aaacccatttctgaatctaatctaaacacttccaaattccaatctaaaccca 166  Q
    |||||||||| || ||||||||||||  ||||||||| ||||||||||||||    
T  21709985 aaacccatttttggatctaatctaaattcttccaaatcccaatctaaaccca 21710036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 60 - 163
Target Start/End: Complemental strand, 26025621 - 26025518
Alignment:
Q  60 cattttcgaattccaatccttcatcatcagcattaatcctttcatattccaatctaaacccatttctgaatctaatctaaacacttccaaattccaatct 159  Q
    ||||||||||| |||||| ||||||||||  |  |||||||||| |||||||||||||||||||| || ||||||||||||  ||||||||| |||||||    
T  26025621 cattttcgaatgccaatcattcatcatcaatagcaatcctttcaaattccaatctaaacccatttttggatctaatctaaattcttccaaatcccaatct 26025522  T
Q  160 aaac 163  Q
    ||||    
T  26025521 aaac 26025518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 98 - 163
Target Start/End: Original strand, 33458702 - 33458767
Alignment:
Q  98 ctttcatattccaatctaaacccatttctgaatctaatctaaacacttccaaattccaatctaaac 163  Q
    |||||| |||||||||||||||||||| || ||||||||||||| ||||||||||||||| |||||    
T  33458702 ctttcaaattccaatctaaacccatttttggatctaatctaaactcttccaaattccaatttaaac 33458767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 60 - 163
Target Start/End: Original strand, 123761 - 123864
Alignment:
Q  60 cattttcgaattccaatccttcatcatcagcattaatcctttcatattccaatctaaacccatttctgaatctaatctaaacacttccaaattccaatct 159  Q
    ||||||||||| |||||| ||||||||||  |  |||||||||| |||||||||||||||||||| |||||||||||||||  ||||||||| |||||||    
T  123761 cattttcgaatgccaatcattcatcatcaatagcaatcctttcaaattccaatctaaacccatttttgaatctaatctaaattcttccaaatcccaatct 123860  T
Q  160 aaac 163  Q
    ||||    
T  123861 aaac 123864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 118
Target Start/End: Original strand, 134632 - 134690
Alignment:
Q  60 cattttcgaattccaatccttcatcatcagcattaatcctttcatattccaatctaaac 118  Q
    ||||||||||| |||||| ||||||||||  |  |||||||||| ||||||||||||||    
T  134632 cattttcgaatgccaatcattcatcatcaatagcaatcctttcaaattccaatctaaac 134690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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