View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8512_high_1 (Length: 686)
Name: NF8512_high_1
Description: NF8512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8512_high_1 |
 | |
|
| [»] scaffold0187 (1 HSPs) |
| | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 671; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 671; E-Value: 0
Query Start/End: Original strand, 1 - 671
Target Start/End: Original strand, 13219749 - 13220419
Alignment:
| Q |
1 |
tgtccataatgatgtcatgcttgcttttgggactccggagaaacaaatcttgatcgaacctatatttgcccaatggatacaatctgctcatggtaaaact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13219749 |
tgtccataatgatgtcatgcttgcttttgggactccggagaaacaaatcttgatcgaacctatatttgcccaatggatacaatctgctcatggtaaaact |
13219848 |
T |
|
| Q |
101 |
tcatatgggttcgatgtacttttatcttcaacgaatagtccggcgctcagtgcggggcgaagcatatggttgcctggttggttaaatgctattaatgaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13219849 |
tcatatgggttcgatgtacttttatcttcaacgaatagtccggcgctcagtgcggggcgaagcatatggttgcctggttggttaaatgctattaatgaga |
13219948 |
T |
|
| Q |
201 |
atagtaattctctattcttaacaataggccctggagacttcttggttcatcatgctattgctcttggtttacatacaactacattgatcttagtaaaagg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13219949 |
atagtaattctctattcttaacaataggccctggagacttcttggttcatcatgctattgctcttggtttacatacaactacattgatcttagtaaaagg |
13220048 |
T |
|
| Q |
301 |
tgctttggatgcacgcggttccaagttaatgccggataaaaaggattttggttatagttttccttgcgatggtccgggacgaggtggtacttgtgatatt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13220049 |
tgctttggatgcacgcggttccaagttaatgccggataaaaaggattttggttatagttttccttgcgatggtccgggacgaggtggtacttgtgatatt |
13220148 |
T |
|
| Q |
401 |
tcggcttgggacgcattttatttggcagttttctggatgttaaataccattggatgggttactttttattggcattggaagcacattacattatggcagg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13220149 |
tcggcttgggacgcattttatttggcagttttctggatgttaaataccattggatgggttactttttattggcattggaagcacattacattatggcagg |
13220248 |
T |
|
| Q |
501 |
gtaatgtttcacaatttaatgaatcttctacctatttgatgggatggttaagagattatctatggttaaattcttcacaacttatcaatggatataaccc |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13220249 |
gtaatgtttcacaatttaatgaatcttctacctatttgatgggatggttaagagattatctatggttaaattcttcacaacttatcaatggatataaccc |
13220348 |
T |
|
| Q |
601 |
ttttggtatgaatagtttatcagtctgggcgtggatgttcttatttggacatcttgtttgggctactggat |
671 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13220349 |
ttttggtatgaatagtttatcagtctgggcgtggatgttcttatttggacatcttgtttgggctactggat |
13220419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 378 - 479
Target Start/End: Complemental strand, 21660074 - 21659973
Alignment:
| Q |
378 |
gacgaggtggtacttgtgatatttcggcttgggacgcattttatttggcagttttctggatgttaaataccattggatgggttactttttattggcattg |
477 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21660074 |
gacgaggtggtacttgtgatatttcggcttgggacgcattttatttggcagttttctggatgttaaataccattggatgggttactttttattggcattg |
21659975 |
T |
|
| Q |
478 |
ga |
479 |
Q |
| |
|
|| |
|
|
| T |
21659974 |
ga |
21659973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187 (Bit Score: 550; Significance: 0; HSPs: 1)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 46 - 622
Target Start/End: Original strand, 30215 - 30792
Alignment:
| Q |
46 |
aatcttgatcgaacctatatttgccc-aatggatacaatctgctcatggtaaaacttcatatgggttcgatgtacttttatcttcaacgaatagtccggc |
144 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
30215 |
aatcttgatcgaacctatatttgccccaatggatacaatctgctcatggtaaaacttcatatgggtacgatgtacttttatcttcaacgaatagtccggc |
30314 |
T |
|
| Q |
145 |
gctcagtgcggggcgaagcatatggttgcctggttggttaaatgctattaatgagaatagtaattctctattcttaacaataggccctggagacttcttg |
244 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30315 |
gctcagtgcggggcgaagcatatggtttcctggttggttaaatgctattaatgagaatagtaattctctattcttaacaataggccctggagacttcttg |
30414 |
T |
|
| Q |
245 |
gttcatcatgctattgctcttggtttacatacaactacattgatcttagtaaaaggtgctttggatgcacgcggttccaagttaatgccggataaaaagg |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30415 |
gttcatcatgctattgctcttggtttacatacaactacattgatcttagtaaaaggtgctctggatgcacgcggttccaagttaatgccggataaaaagg |
30514 |
T |
|
| Q |
345 |
attttggttatagttttccttgcgatggtccgggacgaggtggtacttgtgatatttcggcttgggacgcattttatttggcagttttctggatgttaaa |
444 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
30515 |
attttggttatagttttccttgcgatggtccgagacgaggtggtacttgtgatatttcggcttgggacgcattttatttggcaattttctggatgttaaa |
30614 |
T |
|
| Q |
445 |
taccattggatgggttactttttattggcattggaagcacattacattatggcagggtaatgtttcacaatttaatgaatcttctacctatttgatggga |
544 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30615 |
taccattggatgggttactttttattggcattggaagcacattacattatggcagggtaatgtttcacaatttaatgaatcttctacctatttgatggga |
30714 |
T |
|
| Q |
545 |
tggttaagagattatctatggttaaattcttcacaacttatcaatggatataacccttttggtatgaatagtttatca |
622 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30715 |
tggttaagagattatctatggttaaattcttcacaacttatcaatggatataacccttttggtatgaatagtttatca |
30792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 550; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 46 - 622
Target Start/End: Complemental strand, 37908862 - 37908285
Alignment:
| Q |
46 |
aatcttgatcgaacctatatttgccc-aatggatacaatctgctcatggtaaaacttcatatgggttcgatgtacttttatcttcaacgaatagtccggc |
144 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
37908862 |
aatcttgatcgaacctatatttgccccaatggatacaatctgctcatggtaaaacttcatatgggtacgatgtacttttatcttcaacgaatagtccggc |
37908763 |
T |
|
| Q |
145 |
gctcagtgcggggcgaagcatatggttgcctggttggttaaatgctattaatgagaatagtaattctctattcttaacaataggccctggagacttcttg |
244 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37908762 |
gctcagtgcggggcgaagcatatggtttcctggttggttaaatgctattaatgagaatagtaattctctattcttaacaataggccctggagacttcttg |
37908663 |
T |
|
| Q |
245 |
gttcatcatgctattgctcttggtttacatacaactacattgatcttagtaaaaggtgctttggatgcacgcggttccaagttaatgccggataaaaagg |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37908662 |
gttcatcatgctattgctcttggtttacatacaactacattgatcttagtaaaaggtgctctggatgcacgcggttccaagttaatgccggataaaaagg |
37908563 |
T |
|
| Q |
345 |
attttggttatagttttccttgcgatggtccgggacgaggtggtacttgtgatatttcggcttgggacgcattttatttggcagttttctggatgttaaa |
444 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
37908562 |
attttggttatagttttccttgcgatggtccgagacgaggtggtacttgtgatatttcggcttgggacgcattttatttggcaattttctggatgttaaa |
37908463 |
T |
|
| Q |
445 |
taccattggatgggttactttttattggcattggaagcacattacattatggcagggtaatgtttcacaatttaatgaatcttctacctatttgatggga |
544 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37908462 |
taccattggatgggttactttttattggcattggaagcacattacattatggcagggtaatgtttcacaatttaatgaatcttctacctatttgatggga |
37908363 |
T |
|
| Q |
545 |
tggttaagagattatctatggttaaattcttcacaacttatcaatggatataacccttttggtatgaatagtttatca |
622 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37908362 |
tggttaagagattatctatggttaaattcttcacaacttatcaatggatataacccttttggtatgaatagtttatca |
37908285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 5 - 671
Target Start/End: Complemental strand, 237956 - 237290
Alignment:
| Q |
5 |
cataatgatgtcatgcttgcttttgggactccggagaaacaaatcttgatcgaacctatatttgcccaatggatacaatctgctcatggtaaaacttcat |
104 |
Q |
| |
|
||||| || ||||||||||||||||| ||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||| || || ||| |
|
|
| T |
237956 |
cataacgacgtcatgcttgcttttggtactccagaaaagcaaatcttgatcgaacctatatttgcccaatggatacaatctgctcatggcaagacgacat |
237857 |
T |
|
| Q |
105 |
atgggttcgatgtacttttatcttcaacgaatagtccggcgctcagtgcggggcgaagcatatggttgcctggttggttaaatgctattaatgagaatag |
204 |
Q |
| |
|
||||||||||| |||| ||||||||||||||| | || || ||| |||||| |||||| |||||||||| || ||||| |||||| ||||||||||||| |
|
|
| T |
237856 |
atgggttcgatatactcttatcttcaacgaatggccccgctttcaatgcgggtcgaagcctatggttgcccggatggttgaatgctgttaatgagaatag |
237757 |
T |
|
| Q |
205 |
taattctctattcttaacaataggccctggagacttcttggttcatcatgctattgctcttggtttacatacaactacattgatcttagtaaaaggtgct |
304 |
Q |
| |
|
|||||| || |||||||||||||| ||||| || |||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||| || ||| |
|
|
| T |
237756 |
taattcgcttttcttaacaataggacctggggatttcttggttcatcatgctattgctctaggtttgcatacaactacattgattttagtaaagggcgct |
237657 |
T |
|
| Q |
305 |
ttggatgcacgcggttccaagttaatgccggataaaaaggattttggttatagttttccttgcgatggtccgggacgaggtggtacttgtgatatttcgg |
404 |
Q |
| |
|
|| || |||||||||||||| |||||||||||||||||||||||||| |||||||||||||| || || || || || || ||||||||||||||||| | |
|
|
| T |
237656 |
ttagacgcacgcggttccaaattaatgccggataaaaaggattttgggtatagttttccttgtgacggcccagggcgcggcggtacttgtgatatttctg |
237557 |
T |
|
| Q |
405 |
cttgggacgcattttatttggcagttttctggatgttaaataccattggatgggttactttttattggcattggaagcacattacattatggcagggtaa |
504 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || || |||||||||||||| || |
|
|
| T |
237556 |
cttgggacgcattttatttggcagttttctggatgttaaataccattgggtgggttactttttattggcattggaaacatatcacattatggcagggcaa |
237457 |
T |
|
| Q |
505 |
tgtttcacaatttaatgaatcttctacctatttgatgggatggttaagagattatctatggttaaattcttcacaacttatcaatggatataaccctttt |
604 |
Q |
| |
|
|||||||||||||||||||| || || |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
237456 |
cgtttcacaatttaatgaatcctccacttatttgatgggatggttaagagattacctatggttaaactcttcacaacttatcaatggatataatcctttt |
237357 |
T |
|
| Q |
605 |
ggtatgaatagtttatcagtctgggcgtggatgttcttatttggacatcttgtttgggctactggat |
671 |
Q |
| |
|
|| |||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
237356 |
gggatgaatagtttatcggtatgggcttggatgttcttatttggacatcttgtttgggctactggat |
237290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 406 - 671
Target Start/End: Complemental strand, 43025981 - 43025716
Alignment:
| Q |
406 |
ttgggacgcattttatttggcagttttctggatgttaaataccattggatgggttactttttattggcattggaagcacattacattatggcagggtaat |
505 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43025981 |
ttgggacgcattttatttggcagttttctggatgttaaataccattggatgagttactttttattggcattggaagcacattacattatggcagggtaat |
43025882 |
T |
|
| Q |
506 |
gtttcacaatttaatgaatcttctacctatttgatgggatggttaagagattatctatggttaaattcttcacaacttatcaatggatataacccttttg |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43025881 |
gtttcacaatttaatgaatcttctacctatttgatgggatggttaagagattatctatggttaaattcttcacaacttatcaatggatataacccttttg |
43025782 |
T |
|
| Q |
606 |
gtatgaatagtttatcagtctgggcgtggatgttcttatttggacatcttgtttgggctactggat |
671 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43025781 |
gtatgaatagtttatcagtctgggcgtggatgttcttatttggacatcttgtttgggctactggat |
43025716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 140; Significance: 6e-73; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 225 - 372
Target Start/End: Original strand, 18045181 - 18045328
Alignment:
| Q |
225 |
taggccctggagacttcttggttcatcatgctattgctcttggtttacatacaactacattgatcttagtaaaaggtgctttggatgcacgcggttccaa |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
18045181 |
taggccctggagacttcttggttcatcatgctattgctcttggtttacatacaactacattgatcttagtaaaaggtgctttggatgcatgcggttccaa |
18045280 |
T |
|
| Q |
325 |
gttaatgccggataaaaaggattttggttatagttttccttgcgatgg |
372 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18045281 |
gttaatgtcggataaaaaggattttggttatagttttccttgcgatgg |
18045328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 313 - 447
Target Start/End: Complemental strand, 35070232 - 35070099
Alignment:
| Q |
313 |
acgcggttccaagttaatgccggataaaaaggattttggttatagttttccttgcgatggtccgggacgaggtggtacttgtgatatttcggcttgggac |
412 |
Q |
| |
|
|||| |||||||||||||| ||||||| |||||||| ||||||||||| ||||||| || || | |||||||||||||||||||||||||||||||| |
|
|
| T |
35070232 |
acgcagttccaagttaatggttgataaaatggattttgattatagttttctttgcgatagtttgg-atgaggtggtacttgtgatatttcggcttgggac |
35070134 |
T |
|
| Q |
413 |
gcattttatttggcagttttctggatgttaaatac |
447 |
Q |
| |
|
|| ||||||||||||| || |||||||||||||| |
|
|
| T |
35070133 |
acaatttatttggcagtcttttggatgttaaatac |
35070099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 313 - 447
Target Start/End: Complemental strand, 35096278 - 35096145
Alignment:
| Q |
313 |
acgcggttccaagttaatgccggataaaaaggattttggttatagttttccttgcgatggtccgggacgaggtggtacttgtgatatttcggcttgggac |
412 |
Q |
| |
|
|||| |||||||| ||||| ||||||| |||||||||||||||||||| ||| ||| || || | |||||||||||||||||||||||||||||||| |
|
|
| T |
35096278 |
acgcagttccaagctaatggttgataaaatggattttggttatagttttctttgagatagtttgg-atgaggtggtacttgtgatatttcggcttgggac |
35096180 |
T |
|
| Q |
413 |
gcattttatttggcagttttctggatgttaaatac |
447 |
Q |
| |
|
|| ||||||||||||| || |||||||||||||| |
|
|
| T |
35096179 |
acaatttatttggcagtcttttggatgttaaatac |
35096145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 385 - 431
Target Start/End: Original strand, 48364288 - 48364334
Alignment:
| Q |
385 |
tggtacttgtgatatttcggcttgggacgcattttatttggcagttt |
431 |
Q |
| |
|
|||||||| ||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
48364288 |
tggtacttatgatatttcggtttgggatgcattttatttggcagttt |
48364334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 4e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 268 - 433
Target Start/End: Original strand, 7243484 - 7243649
Alignment:
| Q |
268 |
tttacatacaactacattgatcttagtaaaaggtgctttggatgcacgcggttccaagttaatgccggataaaaaggattttggttatagttttccttgc |
367 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||||||||||| | |||||||||||||||||||||||||| || || ||||| |||| ||||| |
|
|
| T |
7243484 |
tttacatacaactacattgatattagtaaacggtgctttggatgcacacagttccaagttaatgccggataaaaagatttatgattataatttttcttgc |
7243583 |
T |
|
| Q |
368 |
gatggtccgggacgaggtggtacttgtgatatttcggcttgggacgcattttatttggcagttttc |
433 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
7243584 |
gatggtccgagacaaggtggtacttgtgatatttcggcttgggatgcattttatttggtagttttc |
7243649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 4e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 156 - 245
Target Start/End: Original strand, 29443212 - 29443301
Alignment:
| Q |
156 |
ggcgaagcatatggttgcctggttggttaaatgctattaatgagaatagtaattctctattcttaacaataggccctggagacttcttgg |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29443212 |
ggcgaagcatatggttgcctggttggttaaatgctattaatgagaatagtaattctctattcttaacaataggccctggagacttcttgg |
29443301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 5e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 275 - 347
Target Start/End: Complemental strand, 38363089 - 38363017
Alignment:
| Q |
275 |
acaactacattgatcttagtaaaaggtgctttggatgcacgcggttccaagttaatgccggataaaaaggatt |
347 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||| |||| |||||||||||| ||||||||||||||||| |
|
|
| T |
38363089 |
acaagtacattgatcttagtaaaatgtgctttggatgtacgcagttccaagttaacgccggataaaaaggatt |
38363017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 38 - 96
Target Start/End: Complemental strand, 41602085 - 41602027
Alignment:
| Q |
38 |
gagaaacaaatcttgatcgaacctatatttgcccaatggatacaatctgctcatggtaa |
96 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||||||| |||| ||||||| |
|
|
| T |
41602085 |
gagaaacaaatcttgatcgatcctatatttgtccaatggatacaatatgcttatggtaa |
41602027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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