View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8512_high_2 (Length: 519)
Name: NF8512_high_2
Description: NF8512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8512_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 157; Significance: 3e-83; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 18 - 174
Target Start/End: Complemental strand, 32570999 - 32570843
Alignment:
| Q |
18 |
tagccaaaacattatcatcaccttttccttgatgcttcctatctcatgcaaaataagcttttagattgattcttcctaatgaaaccttctttattcgttt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32570999 |
tagccaaaacattatcatcaccttttccttgatgcttcctatctcatgcaaaataagcttttagattgattcttcctaatgaaaccttctttattcgttt |
32570900 |
T |
|
| Q |
118 |
tcttcaagatttaaacaaaaacgtgactttggtatgttttataatacatacataacc |
174 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32570899 |
tcttcaagatttaaacaaaaacgtgactttggtatgttttataatacatacataacc |
32570843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 279 - 401
Target Start/End: Complemental strand, 32570738 - 32570616
Alignment:
| Q |
279 |
ctagaatctatgtcgtttgtgccagcaagaacggggagacaaagacaacgttatgaagacaaccttcgacttgtttctgggtaagttttacattttcatg |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32570738 |
ctagaatctatgtcgtttgtgccagcaagaacggggagacaaagacaacgttatgaagacaaccttcgacttgtttctgggtaagttttacattttcatg |
32570639 |
T |
|
| Q |
379 |
acatagattctttaccttcaaaa |
401 |
Q |
| |
|
|||||||||||||| |||||||| |
|
|
| T |
32570638 |
acatagattctttatcttcaaaa |
32570616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 453 - 510
Target Start/End: Complemental strand, 32570568 - 32570511
Alignment:
| Q |
453 |
ttatgaccatgcattattgtgcttattgatgtgattgaattgttttgtgttgatgatg |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
32570568 |
ttatgaccatgcattattgtgcttattgatatgattgaattgttttgtgttgttgatg |
32570511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University