View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8512_high_3 (Length: 499)

Name: NF8512_high_3
Description: NF8512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8512_high_3
NF8512_high_3
[»] chr5 (4 HSPs)
chr5 (17-466)||(10329973-10330421)
chr5 (285-358)||(35518280-35518353)
chr5 (222-270)||(16552782-16552830)
chr5 (224-272)||(26525979-26526027)
[»] chr3 (3 HSPs)
chr3 (285-359)||(53653605-53653679)
chr3 (312-360)||(24781185-24781233)
chr3 (219-270)||(42133612-42133663)
[»] chr1 (1 HSPs)
chr1 (219-269)||(44632438-44632488)
[»] chr8 (1 HSPs)
chr8 (290-344)||(13465995-13466049)
[»] chr4 (1 HSPs)
chr4 (215-267)||(44598060-44598112)


Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 17 - 466
Target Start/End: Original strand, 10329973 - 10330421
Alignment:
Q  17 aaatatcccccgatttcatcatcgaaaattatcattttggaatcatgtggttgatcaaatcagagaagattgttatcttggaattgttgaaacctctgga 116  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  10329973 aaatatcccccgacttcatcatcgaaaattatcattttggaatcatgtggttcatcaaatcagagaagattgttatcttcgaattgttgaaacctctgga 10330072  T
Q  117 tgggtgacaacctaattcttttgaagtctatttaaacctctatgctagtatacctcctttcctttttcaaaggtttttcaggtattattcttaaaattga 216  Q
    ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||    
T  10330073 tggatgacaacctaattcttttgaagtctatttaaacatctatgctagtatacctcctttccttttttaaaggtttttcagatatcattcttaaaattga 10330172  T
Q  217 gacttgtaaaattcattgggttcattgagacaaagtgtgtttacctaaagagaaggaaggtgggggagtttacaagtttttaatttggctcttttaagga 316  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  10330173 gacttgtaaaattcgttgggttcattgagacaaagtgtgtttacctaaagagaaggaaggt-ggggagtttacaagttttttatttggctcttttaagga 10330271  T
Q  317 agtggtgttggaggttaaggagggagaaagatgagttttggtgtcacctttcggctcataaacatgggcttctaattagggaagtggttagagagagcat 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10330272 agtggtgttggaggttaaggagggagaaagatgagttttggtgtcacctttcggctcataaacatgggcttctaattagggaagtggttagagagagcat 10330371  T
Q  417 cacaaattcgatttggtggaagaatatttttagcagtatgagaggtgatg 466  Q
    ||||||||| ||||||||||||||||||||||| | ||||||||||||||    
T  10330372 cacaaattcaatttggtggaagaatatttttagaattatgagaggtgatg 10330421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 285 - 358
Target Start/End: Complemental strand, 35518353 - 35518280
Alignment:
Q  285 tttacaagtttttaatttggctcttttaaggaagtggtgttggaggttaaggagggagaaagatgagttttggt 358  Q
    |||| |||||||||||||   | ||||| ||||||||||||||| ||||||||||||||| ||||  |||||||    
T  35518353 tttaaaagtttttaatttacatattttagggaagtggtgttggatgttaaggagggagaatgatggattttggt 35518280  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 222 - 270
Target Start/End: Complemental strand, 16552830 - 16552782
Alignment:
Q  222 gtaaaattcattgggttcattgagacaaagtgtgtttacctaaagagaa 270  Q
    |||||||||||||||||||||   ||||||||| ||||| |||||||||    
T  16552830 gtaaaattcattgggttcatttgaacaaagtgtctttacataaagagaa 16552782  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 224 - 272
Target Start/End: Original strand, 26525979 - 26526027
Alignment:
Q  224 aaaattcattgggttcattgagacaaagtgtgtttacctaaagagaagg 272  Q
    |||||||||| ||| || ||| |||||||||||||||| ||||||||||    
T  26525979 aaaattcattaggtccactgaaacaaagtgtgtttaccaaaagagaagg 26526027  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 285 - 359
Target Start/End: Original strand, 53653605 - 53653679
Alignment:
Q  285 tttacaagtttttaatttggctcttttaaggaagtggtgttggaggttaaggagggagaaagatgagttttggtg 359  Q
    |||| ||||||||||||| |||||||||   |||||||||||||| |||| ||||||||||  ||||||||||||    
T  53653605 tttaaaagtttttaatttagctcttttagataagtggtgttggagattaaagagggagaaatgtgagttttggtg 53653679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 312 - 360
Target Start/End: Original strand, 24781185 - 24781233
Alignment:
Q  312 aaggaagtggtgttggaggttaaggagggagaaagatgagttttggtgt 360  Q
    |||||||||||||  |||||||||||  |||||||||||||||||||||    
T  24781185 aaggaagtggtgtaagaggttaaggaatgagaaagatgagttttggtgt 24781233  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 270
Target Start/End: Original strand, 42133612 - 42133663
Alignment:
Q  219 cttgtaaaattcattgggttcattgagacaaagtgtgtttacctaaagagaa 270  Q
    ||||||||| |||||  |||||||| |||||| |||||||||||||||||||    
T  42133612 cttgtaaaactcattaagttcattgggacaaaatgtgtttacctaaagagaa 42133663  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 44632438 - 44632488
Alignment:
Q  219 cttgtaaaattcattgggttcattgagacaaagtgtgtttacctaaagaga 269  Q
    ||||||||||| || ||||  ||||||||||||||||||||||||||||||    
T  44632438 cttgtaaaattgatcgggtctattgagacaaagtgtgtttacctaaagaga 44632488  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 344
Target Start/End: Complemental strand, 13466049 - 13465995
Alignment:
Q  290 aagtttttaatttggctcttttaaggaagtggtgttggaggttaaggagggagaa 344  Q
    ||||||||||||| ||  ||||| ||||||||||||||||||||| ||| |||||    
T  13466049 aagtttttaatttagccattttagggaagtggtgttggaggttaaagagtgagaa 13465995  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 44598112 - 44598060
Alignment:
Q  215 gagacttgtaaaattcattgggttcattgagacaaagtgtgtttacctaaaga 267  Q
    |||||| |||||||| ||||||||||||  |||||||||||||| | ||||||    
T  44598112 gagactcgtaaaatttattgggttcattaggacaaagtgtgtttgcataaaga 44598060  T

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