View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8512_low_4 (Length: 357)
Name: NF8512_low_4
Description: NF8512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8512_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 33550261 - 33550454
Alignment:
| Q |
1 |
tttccagacaatgttgacattatttttggatactacggaaataatctttttaaagttataatgttcagggaagtattttgcgctactaaaataccttctt |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33550261 |
tttccaaacaatgttgacattatttttggatactacggaaataatctttttaaagttataatgttcagggaagtattttgcgctactaaaataccttctt |
33550360 |
T |
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| Q |
101 |
ttcatagtcgtagcatgtatccagaggaagtcattatatttgatatacacatttctgataatgatttaaacactccaatcaaggtacgttatca |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33550361 |
ttcatagtcgtagcatgtatccagaggaagtcattatatttgatatacacatttctgataatgatttaaacactccaatcaaggtacgttatca |
33550454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 26230635 - 26230829
Alignment:
| Q |
1 |
tttccagacaatgttgacattatttttggatactacggaaataat-ctttttaaagttataatgttcagggaagtattttgcgctactaaaataccttct |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26230635 |
tttccagacaatgttgacattatttttggatactacggaaataattctttttaaagttataatgttcagggaagtattttgcgctactaaaataccttct |
26230734 |
T |
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| Q |
100 |
tttcatagtcgtagcatgtatccagaggaagtcattatatttgatatacacatttctgataatgatttaaacactccaatcaaggtacgttatca |
194 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26230735 |
tttcatagtcgtagcatgtatccagaggaagtcattatatttgatatacacatttctgataatgatttaaacactccaatcaaggtacgttatca |
26230829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 274 - 348
Target Start/End: Original strand, 26230909 - 26230983
Alignment:
| Q |
274 |
agatgttgcccaatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtgttgtgatgatg |
348 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26230909 |
agatgttgcccaatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtgttgtgatgatg |
26230983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 274 - 348
Target Start/End: Original strand, 33550533 - 33550607
Alignment:
| Q |
274 |
agatgttgcccaatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtgttgtgatgatg |
348 |
Q |
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| T |
33550533 |
agatgttgcccaatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtgttgtgatgatg |
33550607 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 178; Significance: 6e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 8335571 - 8335378
Alignment:
| Q |
1 |
tttccagacaatgttgacattatttttggatactacggaaataatctttttaaagttataatgttcagggaagtattttgcgctactaaaataccttctt |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
8335571 |
tttccagacaatgttgacattatttttggatactatggaaataatctttttaaagttataatgttcagggaagttttttgcgctactaaaataccttctt |
8335472 |
T |
|
| Q |
101 |
ttcatagtcgtagcatgtatccagaggaagtcattatatttgatatacacatttctgataatgatttaaacactccaatcaaggtacgttatca |
194 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
8335471 |
ttcatagtcgtagcatgtatccagaggaagtcattatatttgatatacacatttctgataatgatttcaacactccaatcaaggtacattatca |
8335378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 274 - 348
Target Start/End: Complemental strand, 8335298 - 8335224
Alignment:
| Q |
274 |
agatgttgcccaatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtgttgtgatgatg |
348 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
8335298 |
agatgttgcccgatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtgctgtgatgatg |
8335224 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 55 - 194
Target Start/End: Complemental strand, 4684949 - 4684810
Alignment:
| Q |
55 |
gttataatgttcagggaagtattttgcgctactaaaataccttcttttcatagtcgtagcatgtatccagaggaagtcattatatttgatatacacattt |
154 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4684949 |
gttataatgttcagggaagtattttgcgctactaaaataccttcttttcatagtcgtagcatgtatccagaggaagtcattatatttgatatacacattt |
4684850 |
T |
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| Q |
155 |
ctgataatgatttaaacactccaatcaaggtacgttatca |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
4684849 |
ctgataatgatttaaacactccaatcaaggtacgttatca |
4684810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 274 - 348
Target Start/End: Complemental strand, 4684730 - 4684656
Alignment:
| Q |
274 |
agatgttgcccaatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtgttgtgatgatg |
348 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4684730 |
agatgttgcccaatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtgttgtgatgatg |
4684656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 26632587 - 26632645
Alignment:
| Q |
10 |
aatgttgacattatttttggatactacggaaataatctttttaaagttataatgttcag |
68 |
Q |
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|||||||||||| |||||||||| || |||||||||||||||||||||||||||||| |
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| T |
26632587 |
aatgttgacattctttttggataatataaaaataatctttttaaagttataatgttcag |
26632645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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