View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8512_low_5 (Length: 269)
Name: NF8512_low_5
Description: NF8512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8512_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 14 - 127
Target Start/End: Complemental strand, 10330532 - 10330419
Alignment:
| Q |
14 |
ctgcaatgaaatgttacacaataaaaccctacactccaccaattcaacctcacaaacaaacaaatttcttctccaaagctaacaagccccctcaacacca |
113 |
Q |
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| T |
10330532 |
ctgcaatgaaatattagacaataaaaccctacactccaccaattcaacctcacaaacaaacaaatttcttctccaaagctaacaagccccctcaacacca |
10330433 |
T |
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| Q |
114 |
atacctaactacat |
127 |
Q |
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|||||||||||||| |
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| T |
10330432 |
atacctaactacat |
10330419 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 258
Target Start/End: Complemental strand, 24781448 - 24781379
Alignment:
| Q |
189 |
tttaccacctccccatctagccacgactcgtgtgaaaacaacgtcttactaccattttctattttattaa |
258 |
Q |
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||||||||||||||| ||||||||||||| || | |||||| | |||||||||||||||||| |||| |
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| T |
24781448 |
tttaccacctccccacctagccacgactcatgccaggacaacgcttcactaccattttctattttcttaa |
24781379 |
T |
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