View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8513_low_1 (Length: 481)
Name: NF8513_low_1
Description: NF8513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8513_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 432; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 16 - 470
Target Start/End: Complemental strand, 4632088 - 4631633
Alignment:
| Q |
16 |
attttctcatccaatatacacgtt-ccccctcaataaatgcaacttcttgcatgacaaacttcaacaaaaattctttagctatggccaacctcctaaaga |
114 |
Q |
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| T |
4632088 |
attttcccatccaatatacacgtttccccctcaataaatgcaacttcttgcatggcaaacttcaacaaaaattctttagctatggccaacctcctaaaga |
4631989 |
T |
|
| Q |
115 |
acatagttcctagtaaaatcaccctactgtctagtattttgtttctccttcatcttttgttgttccctctagaggttaacagcttgtatgatattttagc |
214 |
Q |
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| T |
4631988 |
acatagttcctagtaaaatcaccctactgtctagtaatttgtttctccttcatcttttgttgttccctctagaggttaacagcttgtatgatattttagc |
4631889 |
T |
|
| Q |
215 |
agtgaattgtggccacttcaacgatactatctttgaaaatcgaacatgggttggggacagggataacaccaaattattctctatcattgaaccacaaacc |
314 |
Q |
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| T |
4631888 |
agtgaattgtggccacttcaacgatactatctttgaaaatcgaacatgggttggggacagggataacaccaaattattctctatcattgaaccacaaacc |
4631789 |
T |
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| Q |
315 |
gaactcccgtctttcaaagccaaagctaatcctaactctgatgctgttaagcgaattcccttcgcctctgcacgtatttctttttcgaatttcacattct |
414 |
Q |
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| T |
4631788 |
gaactcccgtctttcaaagccaaagctaatcctaactctgatgctgttaagcgaattcccttcgcctctgcacgtatttctttttcgaatttcacattct |
4631689 |
T |
|
| Q |
415 |
ccttttcttccatcaccaatggccctatttttcttcgcctctatttttacccaaca |
470 |
Q |
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| T |
4631688 |
ccttttcttccatcaccaatggccctatttttcttcgcctctatttttatccaaca |
4631633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 31 - 470
Target Start/End: Complemental strand, 4668068 - 4667635
Alignment:
| Q |
31 |
atacacgttccccctcaataaatgcaacttcttgcatgacaaacttcaacaaaaattctttagctatggccaacctcctaaagaacatagttcctagtaa |
130 |
Q |
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| T |
4668068 |
atacacgttccacctcaataaatgcaacttcttgcatggcatacttcgacaaaaattctctagttatggccaactccctaaagaacatagttcctagtga |
4667969 |
T |
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| Q |
131 |
aatcaccctactgtctagtattttgtttctccttcatcttttgttgttccctctagaggttaacagcttgtatgatattttagcagtgaattgtggccac |
230 |
Q |
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| T |
4667968 |
aataaccttactgtctattactttgtttctccttcatctatcgttgtttcctctcgcggttaacagctcatatgatgttttagctgtaaattgtggtcat |
4667869 |
T |
|
| Q |
231 |
ttcaacgatactatctttgaaaatcgaacatgggttggggacagggataacaccaaattattctctatcattgaaccacaaaccgaactcccgtctttca |
330 |
Q |
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| T |
4667868 |
tccatagatactatctttgaaaatcgaacctgggttggggacaatgatgataccaaactcttctctgtcattgaaccacaaa------tcatatctgtaa |
4667775 |
T |
|
| Q |
331 |
aagccaaagctaatcctaactctgatgctgttaagcgaattcccttcgcctctgcacgtatttctttttcgaatttcacattctccttttcttccatcac |
430 |
Q |
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| T |
4667774 |
aagccaaagctaatcctaactctgattctgttaatcatattccattttcctctgcacgtatatcattttccgatttcacattctcattttctccgatcaa |
4667675 |
T |
|
| Q |
431 |
caatggccctatttttcttcgcctctatttttacccaaca |
470 |
Q |
| |
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| ||||||| |||||||||||||| |||||||||||||| |
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| T |
4667674 |
tagtggccctgtttttcttcgcctccatttttacccaaca |
4667635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 5e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 174 - 470
Target Start/End: Original strand, 18924850 - 18925143
Alignment:
| Q |
174 |
ttgttccctctagaggttaacagcttgtatgatattttagcagtgaattgtggccacttcaacgatactatctttgaaaatcgaacatgggttggggaca |
273 |
Q |
| |
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||||||||||||| ||||||| | ||||||| |||||| ||||||||||||||| || ||||| | |||||||||||||| |||||||| |||| |
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| T |
18924850 |
ttgttccctctagtggttaac---tcttatgataatttagccctgaattgtggccactccatagatacaacatttgaaaatcgaacctgggttggtgaca |
18924946 |
T |
|
| Q |
274 |
gggataacaccaaattattctctatcattgaaccacaaaccgaactcccgtctttcaaagccaaagctaatcctaactctgatgctgttaagcgaattcc |
373 |
Q |
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|||| |||||||| |||||||||||||||||||||| || ||| | | ||| ||||| ||||| | || |||||||||||| ||||||| | |||||| |
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| T |
18924947 |
tggatgacaccaaactattctctatcattgaaccacagactgaattttcatctatcaaatccaaacccaaccctaactctgattctgttaaccaaattcc |
18925046 |
T |
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| Q |
374 |
cttcgcctctgcacgtatttctttttcgaatttcacattctccttttcttccatcaccaatggccctatttttcttcgcctctatttttacccaaca |
470 |
Q |
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| T |
18925047 |
gtttgcctcagcacgtatttcattttccaacttcacattctcatttccttccgtcgctaatagccctatttttcttcgccttcatttttacccaaca |
18925143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 18924760 - 18924819
Alignment:
| Q |
77 |
caacaaaaattctttagctatggccaacctcctaaagaacatagttcctagtaaaatcacc |
137 |
Q |
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| T |
18924760 |
caacaaaaattctttaga-atggccaactacctaaagaacatagttcttactaaaatcacc |
18924819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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