View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8513_low_2 (Length: 388)

Name: NF8513_low_2
Description: NF8513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8513_low_2
NF8513_low_2
[»] chr5 (4 HSPs)
chr5 (18-381)||(17914216-17914582)
chr5 (19-366)||(17976592-17976945)
chr5 (168-270)||(35273321-35273423)
chr5 (283-315)||(26099031-26099063)
[»] chr2 (1 HSPs)
chr2 (133-378)||(8823289-8823534)


Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 381
Target Start/End: Original strand, 17914216 - 17914582
Alignment:
Q  18 aattcattccctgcaccgtctccacggttaatctactcgctgaccctgttaccgatgaagtgttcgtcaaattacttctcactcctggtactaacaactg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  17914216 aattcattccctgcaccgtctccacggttaatctactcgctgaccctgttaccgatgaagtgttcgtcaaattacttctcactcctggtactaataactg 17914315  T
Q  118 tgtccacgaacctctt---gaggttcgtgaagaccaacatgacggggttgaggttgtttcctctggaaaaactctaactccgtctgatgctaataacggc 214  Q
    |||||||||||||| |   |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  17914316 tgtccacgaacctcctcctgaggttcgtgaagaccaacatgacggggttaaggttgtttcctctggcaaaactctaactccgtctgatgctaataacggc 17914415  T
Q  215 ggtgcattctcagtgcctagcgaatgcgaaaaattaatcttcccgccacttgacctccaggccgaaaagccatctcagaaactctcagtcactgacattc 314  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  17914416 ggtgcattctcagtgcctagcgaatgcgcaaaattaatcttcccgccacttgacctccaggccgaaaagccttctcagaaactctcagtcactgacattc 17914515  T
Q  315 acggcaaagaatggaagcttcgccacgtctaccgtgggactcccttgcgacacctgatcaccaccaa 381  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17914516 acggcaaagaatggaagcttcgccacgtctaccgtgggactcccttgcgacacctgatcaccaccaa 17914582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 19 - 366
Target Start/End: Complemental strand, 17976945 - 17976592
Alignment:
Q  19 attcattccctgcaccgtctccacggttaatctactcgctgaccctgttaccgatgaagtgttcgtcaaattacttctcactcctggtactaacaactgt 118  Q
    |||||||| |||||| |||||| ||||| ||||||||||||||| |  |||||||||||| ||||||||| |||| ||||||||||  ||||||||  ||    
T  17976945 attcattctctgcacagtctccgcggttgatctactcgctgacctttgtaccgatgaagtcttcgtcaaactactcctcactcctgtcactaacaaaggt 17976846  T
Q  119 gtccacgaacctc------ttgaggttcgtgaagaccaacatgacggggttgaggttgtttcctctggaaaaactctaactccgtctgatgctaataacg 212  Q
    || ||||||||||      ||||||||||||||||| || |||| |      |||||||||||| |   || ||||| || || ||||||||||| || |    
T  17976845 gttcacgaacctcactctcttgaggttcgtgaagacaaagatgatgacaaaaaggttgtttcctattccaagactctcaccccatctgatgctaacaatg 17976746  T
Q  213 gcggtgcattctcagtgcctagcgaatgcgaaaaattaatcttcccgccacttgacctccaggccgaaaagccatctcagaaactctcagtcactgacat 312  Q
    ||||||||||||| |||||    |||||||  ||||||||||||||||||||||||||| |  | |||||||| | |||  |||||||  ||| ||||||    
T  17976745 gcggtgcattctctgtgccagtggaatgcgcgaaattaatcttcccgccacttgacctcaatactgaaaagccgtttcaagaactctccatcagtgacat 17976646  T
Q  313 tcacggcaaagaatggaagcttcgccacgtctaccgtgggactcccttgcgaca 366  Q
    |||||||||||  |||||| ||||||| || |||||||||||||||||||||||    
T  17976645 tcacggcaaagtttggaagtttcgccatgtttaccgtgggactcccttgcgaca 17976592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 270
Target Start/End: Original strand, 35273321 - 35273423
Alignment:
Q  168 ttgtttcctctggaaaaactctaactccgtctgatgctaataacggcggtgcattctcagtgcctagcgaatgcgaaaaattaatcttcccgccacttga 267  Q
    |||||| |||||| || ||||| || | ||| ||||||||||| |||||||||||||| || |||   |||||||  ||||| || ||||||||||||||    
T  35273321 ttgttttctctggcaagactctcacccagtcggatgctaataatggcggtgcattctccgtaccttctgaatgcgcgaaattgatattcccgccacttga 35273420  T
Q  268 cct 270  Q
    |||    
T  35273421 cct 35273423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 315
Target Start/End: Complemental strand, 26099063 - 26099031
Alignment:
Q  283 gccatctcagaaactctcagtcactgacattca 315  Q
    |||||||||||||||||| ||||||||||||||    
T  26099063 gccatctcagaaactctccgtcactgacattca 26099031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 133 - 378
Target Start/End: Original strand, 8823289 - 8823534
Alignment:
Q  133 tgaggttcgtgaagaccaacatgacggggttgaggttgtttcctctggaaaaactctaactccgtctgatgctaataacggcggtgcattctcagtgcct 232  Q
    ||||||||| |||||| ||| | | || | |||| |||||||||||||||| |||||||| |  ||||||||||||||||| ||||||||||| || |||    
T  8823289 tgaggttcgggaagacgaacctaaaggtgatgagtttgtttcctctggaaagactctaaccctatctgatgctaataacggtggtgcattctccgtacct 8823388  T
Q  233 agcgaatgcgaaaaattaatcttcccgccacttgacctccaggccgaaaagccatctcagaaactctcagtcactgacattcacggcaaagaatggaagc 332  Q
     |    ||||  | || ||||||||| |  ||||||||| |  |  || ||||||||||  |||| || || || |||||||| ||||||   ||| ||     
T  8823389 cgttcttgcgcgacatcaatcttcccacagcttgacctcgaaacaaaacagccatctcaagaactgtctgttaccgacattcatggcaaaatctgggagt 8823488  T
Q  333 ttcgccacgtctaccgtgggactcccttgcgacacctgatcaccac 378  Q
    ||||||| ||||||||||| ||||||||| ||||||||||||||||    
T  8823489 ttcgccatgtctaccgtggaactcccttgagacacctgatcaccac 8823534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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