View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8513_low_4 (Length: 281)

Name: NF8513_low_4
Description: NF8513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8513_low_4
NF8513_low_4
[»] chr7 (14 HSPs)
chr7 (1-281)||(4631317-4631597)
chr7 (2-247)||(4667365-4667604)
chr7 (91-247)||(4783353-4783506)
chr7 (91-247)||(4815782-4815935)
chr7 (83-232)||(4653935-4654081)
chr7 (85-234)||(4711584-4711730)
chr7 (182-247)||(4644131-4644196)
chr7 (182-247)||(4673127-4673192)
chr7 (85-247)||(4696702-4696861)
chr7 (85-147)||(4637378-4637440)
chr7 (85-147)||(4864446-4864508)
chr7 (86-149)||(4644214-4644277)
chr7 (83-147)||(4673224-4673288)
chr7 (182-234)||(4845618-4845670)
[»] chr4 (1 HSPs)
chr4 (1-247)||(18925173-18925413)


Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 4631597 - 4631317
Alignment:
Q  1 cctcttcacagtcaaagtaggaaccaaccttacccttctcaaagactttaatccctcgctttggctttcaaacgatagcaagacaatcaccaaagaatat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4631597 cctcttcacagtcaaagtaggaaccaaccttacccttctcaaagactttaatccctcgctttggctttcaaacgatagcaagacaatcaccaaagaatat 4631498  T
Q  101 tgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaacacaaaccaattaaatggtttagctttcatcaacggaattg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4631497 tgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaacacaaaccaattaaatggtttagctttcatcaacggaattg 4631398  T
Q  201 agattgtgtctatgccttcttttctctattacactaatctcagtgacacgaactaccattcaaagctacttggttctgaca 281  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| || |||||    
T  4631397 agattgtgtctatgccttcttttctctattacactaatctcagtgacacgaactaccatttaaagatacttgattttgaca 4631317  T

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Target: chr7; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 2 - 247
Target Start/End: Complemental strand, 4667604 - 4667365
Alignment:
Q  2 ctcttcacagtcaaagtaggaaccaaccttacccttctcaaagactttaatccctcgctttggctttcaaacgatagcaagacaatcaccaaagaatatt 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  || || ||||||||| ||||||||| |||||||||||||||||||||||    
T  4667604 ctcttcacagtcaaagtaggaaccaaccttacccttctcaaagactttagcccttcactttggcttccaaacgataacaagacaatcaccaaagaatatt 4667505  T
Q  102 gcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaacacaaaccaattaaatggtttagctttcatcaacggaattga 201  Q
    |||| || |     | |   ||||| ||| || ||||||||||||||||      |||||||||||||||||||| ||| ||||||||||||||||||||    
T  4667504 gcatccataccaaacaaggggagaaactagacgtaactttcattcccaa------aaacacaaaccaattaaatgcttttgctttcatcaacggaattga 4667411  T
Q  202 gattgtgtctatgccttcttttctctattacactaatctcagtgac 247  Q
    ||||||||||||||| ||||||||||||||||| || |||||||||    
T  4667410 gattgtgtctatgccgtcttttctctattacacaaacctcagtgac 4667365  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 91 - 247
Target Start/End: Original strand, 4783353 - 4783506
Alignment:
Q  91 caaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaacacaaaccaattaaatg---gtttagctttc 187  Q
    ||||||||||| ||| |||||    ||||| ||||||||||||||||||||||||||||| ||      |||||||||||| | |    |||  ||||||    
T  4783353 caaagaatattccatccaaatcaaaccaaacgagaagctaaacataactttcattcccaacaa------cacaaaccaattgattcctagttatgctttc 4783446  T
Q  188 atcaacggaattgagattgtgtctatgccttcttttctctattacactaatctcagtgac 247  Q
    || |||||||| ||  ||||||||||||||||||||||||||||||| || |||||||||    
T  4783447 attaacggaatcgaagttgtgtctatgccttcttttctctattacacaaacctcagtgac 4783506  T

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Target: chr7; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 91 - 247
Target Start/End: Original strand, 4815782 - 4815935
Alignment:
Q  91 caaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaacacaaaccaattaaatg---gtttagctttc 187  Q
    ||||||||||| ||| |||||    ||||| ||||||||||||||||||||||||||||| ||      |||||||||||| | |    |||  ||||||    
T  4815782 caaagaatattccatccaaatcaaaccaaacgagaagctaaacataactttcattcccaacaa------cacaaaccaattgagtcctagttatgctttc 4815875  T
Q  188 atcaacggaattgagattgtgtctatgccttcttttctctattacactaatctcagtgac 247  Q
    || |||||||| ||  ||||||||||||||||||||||||||||||| || |||||||||    
T  4815876 attaacggaatcgaagttgtgtctatgccttcttttctctattacacaaacctcagtgac 4815935  T

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Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 83 - 232
Target Start/End: Complemental strand, 4654081 - 4653935
Alignment:
Q  83 acaatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaacacaaaccaattaaatggt--tt 180  Q
    ||||||||||||||||||||||| ||| |    || ||| ||||||||||||||||||||||||||||       ||||||||||| | ||||  |  ||    
T  4654081 acaatcaccaaagaatattgcatccaagtccaaccgaataagaagctaaacataactttcattcccaa------caacacaaaccattcaaatccttatt 4653988  T
Q  181 a-gctttcatcaacggaattgagattgtgtctatgccttcttttctctattac 232  Q
    | |||||||| || ||||||||  |||||||||||||||||||||||||||||    
T  4653987 atgctttcattaatggaattgaagttgtgtctatgccttcttttctctattac 4653935  T

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Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 234
Target Start/End: Original strand, 4711584 - 4711730
Alignment:
Q  85 aatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaacacaaaccaattaaatggtt--ta- 181  Q
    ||||||||||||||||||||| |||||    |||||||||||||||| ||||||||||||||| || ||      || ||| || | ||||  ||  ||     
T  4711584 aatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaa------cataaatcattcaaatccttattat 4711677  T
Q  182 gctttcatcaacggaattgagattgtgtctatgccttcttttctctattacac 234  Q
    |||||||| |||||||| || ||||||||||||||||||||||||||||||||    
T  4711678 gctttcattaacggaatcgaaattgtgtctatgccttcttttctctattacac 4711730  T

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Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 4644196 - 4644131
Alignment:
Q  182 gctttcatcaacggaattgagattgtgtctatgccttcttttctctattacactaatctcagtgac 247  Q
    |||||||| |||||||| ||  ||||||||||||||||||||||||||||||| || |||||||||    
T  4644196 gctttcattaacggaatcgaagttgtgtctatgccttcttttctctattacacaaacctcagtgac 4644131  T

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Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 4673192 - 4673127
Alignment:
Q  182 gctttcatcaacggaattgagattgtgtctatgccttcttttctctattacactaatctcagtgac 247  Q
    |||||||| |||||||| || |||||||| ||||||||||||||||||||||| || |||||||||    
T  4673192 gctttcattaacggaatcgaaattgtgtcaatgccttcttttctctattacacaaacctcagtgac 4673127  T

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Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 247
Target Start/End: Original strand, 4696702 - 4696861
Alignment:
Q  85 aatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaacacaaaccaattaaatggtt--ta- 181  Q
    ||||||||||||||||||||| ||||     |||||||||||| |||||||||||||||||||||  ||      || |||||| | ||||  ||  ||     
T  4696702 aatcaccaaagaatattgcattcaaaccaaaccaaatgagaagttaaacataactttcattcccagcaa------cataaaccagtcaaatccttattat 4696795  T
Q  182 gctttcatcaacggaattgagattgtgtctatgccttcttttctctattacactaatctcagtgac 247  Q
    |||||||| |||||||| ||  ||||||| ||||||||||||||||||||||| || |||||||||    
T  4696796 gctttcattaacggaatagaagttgtgtcaatgccttcttttctctattacacaaacctcagtgac 4696861  T

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Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 4637440 - 4637378
Alignment:
Q  85 aatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcc 147  Q
    |||||||||||||||||||||||||||    |||||||| ||| |||||||||||||||||||    
T  4637440 aatcaccaaagaatattgcatacaaatcaaaccaaatgaaaagttaaacataactttcattcc 4637378  T

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Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 4864508 - 4864446
Alignment:
Q  85 aatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcc 147  Q
    ||||||||||||||||||||| |||||     |||||||||||||||||||||||||||||||    
T  4864508 aatcaccaaagaatattgcattcaaatcaaatcaaatgagaagctaaacataactttcattcc 4864446  T

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Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 149
Target Start/End: Complemental strand, 4644277 - 4644214
Alignment:
Q  86 atcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattccca 149  Q
    |||| |||||| |||||||| ||||||    |||||||||||||||||||||||||||||||||    
T  4644277 atcatcaaagagtattgcatccaaattaaaacaaatgagaagctaaacataactttcattccca 4644214  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 147
Target Start/End: Complemental strand, 4673288 - 4673224
Alignment:
Q  83 acaatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcc 147  Q
    |||||||||||||||| ||| || |||||    || ||||||||||||||||||| |||||||||    
T  4673288 acaatcaccaaagaattttgtatccaaatcaagcccaatgagaagctaaacataaatttcattcc 4673224  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 4845618 - 4845670
Alignment:
Q  182 gctttcatcaacggaattgagattgtgtctatgccttcttttctctattacac 234  Q
    |||||| | |||||||| ||  ||||||| |||||||||||||||||||||||    
T  4845618 gctttcgttaacggaatcgaagttgtgtcgatgccttcttttctctattacac 4845670  T

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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 18925173 - 18925413
Alignment:
Q  1 cctcttcacagtcaaagtaggaaccaaccttacccttctcaaagactttaatccctcgctttggctttcaaacgatagcaagacaatcaccaaagaatat 100  Q
    ||||||||| |||||||| ||||||||  | ||||||||||| |||||||| ||| | |||||||||  |||||||| |||||||||||| ||||| ||     
T  18925173 cctcttcaccgtcaaagttggaaccaatgtcacccttctcaatgactttaaccccgcactttggcttcaaaacgataacaagacaatcacgaaagagtac 18925272  T
Q  101 tgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaacacaaaccaattaaatggtttagctttcatcaacggaattg 200  Q
    ||| |  ||||    |||| ||||||| |||| ||||||||||||||   ||| ||   || ||| |||  ||| | ||  |||||||||||||||||||    
T  18925273 tgcctcaaaatgaaaccaactgagaagttaaatataactttcattcc---aaacac---cataaatcaaccaaaggcttatgctttcatcaacggaattg 18925366  T
Q  201 agattgtgtctatgccttcttttctctattacactaatctcagtgac 247  Q
    |||| ||||| ||||||||||||||||||||||| || |||| ||||    
T  18925367 agatcgtgtccatgccttcttttctctattacacaaacctcaatgac 18925413  T

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