View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8513_low_7 (Length: 233)

Name: NF8513_low_7
Description: NF8513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8513_low_7
NF8513_low_7
[»] chr2 (15 HSPs)
chr2 (1-225)||(9328917-9329141)
chr2 (5-225)||(9321297-9321514)
chr2 (1-216)||(9292261-9292470)
chr2 (50-122)||(9357604-9357676)
chr2 (1-123)||(9316448-9316570)
chr2 (45-107)||(10348227-10348289)
chr2 (45-108)||(10372305-10372368)
chr2 (49-114)||(10336273-10336338)
chr2 (50-114)||(9283827-9283891)
chr2 (48-108)||(10353556-10353616)
chr2 (55-216)||(9274845-9275000)
chr2 (5-114)||(7115231-7115340)
chr2 (50-114)||(9060772-9060836)
chr2 (149-210)||(9283923-9283984)
chr2 (147-216)||(10348121-10348190)
[»] chr4 (1 HSPs)
chr4 (48-108)||(26575308-26575368)
[»] chr3 (2 HSPs)
chr3 (48-114)||(37462927-37462993)
chr3 (147-191)||(37462853-37462897)
[»] scaffold0667 (1 HSPs)
scaffold0667 (45-114)||(4912-4981)
[»] chr8 (1 HSPs)
chr8 (52-114)||(41966362-41966424)
[»] chr1 (2 HSPs)
chr1 (52-113)||(29467429-29467489)
chr1 (52-108)||(29423703-29423759)


Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 9329141 - 9328917
Alignment:
Q  1 cttgctatccctaacattcttgaatctgacaacatccgtcgcttctccttatgcgttcacggtttcggttttgatcctttatccggtgattacaaactcc 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9329141 cttgctatccctaacattcttgaatctgacaacatccatcgcttctccttatgcgttcacggtttcggttttgatcctttatccggtgattacaaactcc 9329042  T
Q  101 tcagaatcgcttggatagccgatccaaatgaaagatcctcttttgttccacatgtcagactcttcaactctaaaacaaactcttggaaaattattcctgc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9329041 tcagaatcgcttggatagccgatccaaatgaaagatcctcttttgttccacatgtcagactcttcaactctaaaacaaactcttggaaaataattcctgc 9328942  T
Q  201 tatgccctacgctcttgtctatgct 225  Q
    |||||||||||||||||||||||||    
T  9328941 tatgccctacgctcttgtctatgct 9328917  T

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Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 225
Target Start/End: Complemental strand, 9321514 - 9321297
Alignment:
Q  5 ctatccctaacattcttgaatctgacaacatccgtcgcttctccttatgcgttcacggtttcggttttgatcctttatccggtgattacaaactcctcag 104  Q
    |||||||| ||||| | ||||| |||||||||  ||||| || |||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||    
T  9321514 ctatccctgacattatggaatccgacaacatcaatcgctgctgcttatgcgttcatggtttcggttttgatcctttaaccggcgattacaaactcctcag 9321415  T
Q  105 aatcgcttggatagccgatccaaatgaaagatcctcttttgttccacatgtcagactcttcaactctaaaacaaactcttggaaaattattcctgctatg 204  Q
    |||| ||||| |||||  ||||    | |  || | || || | |||||||||||||||||| ||||| ||||||||| |||||||| |||||   ||||    
T  9321414 aatctcttggttagcctctcca---cacaactctttttatgattcacatgtcagactcttcagctctataacaaactcgtggaaaataattcccagtatg 9321318  T
Q  205 ccctacgctcttgtctatgct 225  Q
    || ||| ||||| ||||||||    
T  9321317 ccgtactctcttatctatgct 9321297  T

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Target: chr2; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 9292470 - 9292261
Alignment:
Q  1 cttgctatccctaacattcttgaatctgacaacatccgtcgcttctccttatgcgttcacggtttcggttttgatcctttatccggtgattacaaactcc 100  Q
    |||||||||||||||||||| || ||||| |||||   ||||  |    ||||||||||||| ||||||| |||||| ||| |||| |||||||||||||    
T  9292470 cttgctatccctaacattctcgagtctgaaaacattgatcgcgccggtgtatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcc 9292371  T
Q  101 tcagaatcgcttggatagccgatccaaatgaaagatcctcttttgttccacatgtcagactcttcaactctaaaacaaactcttggaaaattattcctgc 200  Q
    |||||||| ||||||||||||| | | ||      | |||||||| |||||| || |||||||||| ||| ||||| ||||| |||||||| ||||||      
T  9292370 tcagaatctcttggatagccgacctacat------tactcttttgatccacaggtgagactcttcagctccaaaactaactcgtggaaaatcattcctag 9292277  T
Q  201 tatgccctacgctctt 216  Q
    |||||| |||||||||    
T  9292276 tatgccgtacgctctt 9292261  T

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Target: chr2; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 50 - 122
Target Start/End: Complemental strand, 9357676 - 9357604
Alignment:
Q  50 tatgcgttcacggtttcggttttgatcctttatccggtgattacaaactcctcagaatcgcttggatagccga 122  Q
    ||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||    
T  9357676 tatgcgttcacggcttcggttttgatcctttaaccggcgattacaaactcctcagaatctcttggatagccga 9357604  T

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Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 9316570 - 9316448
Alignment:
Q  1 cttgctatccctaacattcttgaatctgacaacatccgtcgcttctccttatgcgttcacggtttcggttttgatcctttatccggtgattacaaactcc 100  Q
    ||||||||||||||||||||||||||||||||   |  ||||  |    ||||||||||||| |||||||||||||| | | | ||||||||||||||||    
T  9316570 cttgctatccctaacattcttgaatctgacaaacccaatcgcggcggtatatgcgttcacggcttcggttttgatccatcaacaggtgattacaaactcc 9316471  T
Q  101 tcagaatcgcttggatagccgat 123  Q
    |||||||  ||||||| ||||||    
T  9316470 tcagaatttcttggatggccgat 9316448  T

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Target: chr2; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 45 - 107
Target Start/End: Complemental strand, 10348289 - 10348227
Alignment:
Q  45 ctccttatgcgttcacggtttcggttttgatcctttatccggtgattacaaactcctcagaat 107  Q
    |||||||||||||||||| |||||||||||||   ||||||||||||||||||||||||||||    
T  10348289 ctccttatgcgttcacggcttcggttttgatcaaatatccggtgattacaaactcctcagaat 10348227  T

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Target: chr2; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 45 - 108
Target Start/End: Complemental strand, 10372368 - 10372305
Alignment:
Q  45 ctccttatgcgttcacggtttcggttttgatcctttatccggtgattacaaactcctcagaatc 108  Q
    ||||||||||||||| || |||||||||||| |||||||||| ||| |||||||||||||||||    
T  10372368 ctccttatgcgttcatggcttcggttttgattctttatccggcgatcacaaactcctcagaatc 10372305  T

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Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 49 - 114
Target Start/End: Complemental strand, 10336338 - 10336273
Alignment:
Q  49 ttatgcgttcacggtttcggttttgatcctttatccggtgattacaaactcctcagaatcgcttgg 114  Q
    |||||||||||||| |||||||||||| | |||||||  ||||||||||||||||||||| |||||    
T  10336338 ttatgcgttcacggattcggttttgattcattatccgccgattacaaactcctcagaatctcttgg 10336273  T

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Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 9283827 - 9283891
Alignment:
Q  50 tatgcgttcacggtttcggttttgatcctttatccggtgattacaaactcctcagaatcgcttgg 114  Q
    ||||| ||||||| |||||||||||||||||| |||| ||||||||||||||| ||||| |||||    
T  9283827 tatgcattcacggcttcggttttgatcctttaaccggcgattacaaactcctccgaatctcttgg 9283891  T

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Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 10353616 - 10353556
Alignment:
Q  48 cttatgcgttcacggtttcggttttgatcctttatccggtgattacaaactcctcagaatc 108  Q
    |||||||||||| || |||||||||||| || ||||||| |||||||||||||||||||||    
T  10353616 cttatgcgttcatggcttcggttttgattctgtatccggcgattacaaactcctcagaatc 10353556  T

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Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 55 - 216
Target Start/End: Complemental strand, 9275000 - 9274845
Alignment:
Q  55 gttcacggtttcggttttgatcctttatccggtgattacaaactcctcagaatcgcttggatagccgatccaaatgaaagatcctcttttgttccacatg 154  Q
    ||||||||||| |||||||||||||||||||| ||||| ||||| ||||||||| | ||| |||| |||  | ||      | ||||||||   ||||||    
T  9275000 gttcacggttttggttttgatcctttatccggcgattataaacttctcagaatctcatggttagctgatatacat------tactcttttgaatcacatg 9274907  T
Q  155 tcagactcttcaactctaaaacaaactcttggaaaattattcctgctatgccctacgctctt 216  Q
    | |||||||||| ||  ||||||||||| |||||||| |||||   |||||| |||||||||    
T  9274906 tgagactcttcagcttgaaaacaaactcgtggaaaataattcccagtatgccgtacgctctt 9274845  T

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Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 114
Target Start/End: Original strand, 7115231 - 7115340
Alignment:
Q  5 ctatccctaacattcttgaatctgacaacatccgtcgcttctccttatgcgttcacggtttcggttttgatcctttatccggtgattacaaactcctcag 104  Q
    |||||||||||||| || ||||||||| ||||  | ||||     ||||| ||||||| |||||||||||||||||| | | |||||||||||| |||||    
T  7115231 ctatccctaacattattcaatctgacatcatcaatggcttaggtctatgctttcacggcttcggttttgatcctttaacagatgattacaaacttctcag 7115330  T
Q  105 aatcgcttgg 114  Q
    |||| |||||    
T  7115331 aatctcttgg 7115340  T

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Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 9060772 - 9060836
Alignment:
Q  50 tatgcgttcacggtttcggttttgatcctttatccggtgattacaaactcctcagaatcgcttgg 114  Q
    ||||||||||||| |||||||||||||| ||  |||  ||||||||||||||||||||| |||||    
T  9060772 tatgcgttcacggcttcggttttgatccattcaccgccgattacaaactcctcagaatcacttgg 9060836  T

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Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 210
Target Start/End: Original strand, 9283923 - 9283984
Alignment:
Q  149 cacatgtcagactcttcaactctaaaacaaactcttggaaaattattcctgctatgccctac 210  Q
    |||||| ||||||||||| ||| ||||||||||| |||||||| ||||||  ||||||||||    
T  9283923 cacatgccagactcttcagctccaaaacaaactcgtggaaaataattcctattatgccctac 9283984  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 10348190 - 10348121
Alignment:
Q  147 tccacatgtcagactcttcaactctaaaacaaactcttggaaaattattcctgctatgccctacgctctt 216  Q
    |||||| || |||||||||| ||  ||||||||||| ||||| || |||||||||||||| |||| ||||    
T  10348190 tccacaagtgagactcttcagcttgaaaacaaactcatggaagataattcctgctatgccgtacgatctt 10348121  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 26575368 - 26575308
Alignment:
Q  48 cttatgcgttcacggtttcggttttgatcctttatccggtgattacaaactcctcagaatc 108  Q
    ||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||    
T  26575368 cttatgcgttcacggcttcggttttgattctttatccggcgattacaaactcctcagaatc 26575308  T

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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 37462993 - 37462927
Alignment:
Q  48 cttatgcgttcacggtttcggttttgatcctttatccggtgattacaaactcctcagaatcgcttgg 114  Q
    ||||||||||||||| |||||||||||| ||||| |||| ||||||||||||||||||||| |||||    
T  37462993 cttatgcgttcacggcttcggttttgattctttaaccggcgattacaaactcctcagaatctcttgg 37462927  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 191
Target Start/End: Complemental strand, 37462897 - 37462853
Alignment:
Q  147 tccacatgtcagactcttcaactctaaaacaaactcttggaaaat 191  Q
    ||||||||| |||||||||| ||| ||||||||||| ||||||||    
T  37462897 tccacatgtgagactcttcagctccaaaacaaactcgtggaaaat 37462853  T

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Target: scaffold0667 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 45 - 114
Target Start/End: Complemental strand, 4981 - 4912
Alignment:
Q  45 ctccttatgcgttcacggtttcggttttgatcctttatccggtgattacaaactcctcagaatcgcttgg 114  Q
    |||||||||||||||||| |||||||||||||||||| |||| ||||||||| |||||||| || |||||    
T  4981 ctccttatgcgttcacggcttcggttttgatcctttaaccggcgattacaaaatcctcagactctcttgg 4912  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 114
Target Start/End: Original strand, 41966362 - 41966424
Alignment:
Q  52 tgcgttcacggtttcggttttgatcctttatccggtgattacaaactcctcagaatcgcttgg 114  Q
    ||||||||||| |||||||||||||| ||| || | ||| ||||||||||||||||| |||||    
T  41966362 tgcgttcacggattcggttttgatccattaaccagcgatcacaaactcctcagaatctcttgg 41966424  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 113
Target Start/End: Original strand, 29467429 - 29467489
Alignment:
Q  52 tgcgttcacggtttcggttttgatcctttatccggtgattacaaactcctcagaatcgcttg 113  Q
    ||||||||||| |||||||||||||| ||| ||| |||||||||||| ||||||||| ||||    
T  29467429 tgcgttcacggcttcggttttgatccattaaccgatgattacaaact-ctcagaatctcttg 29467489  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 29423759 - 29423703
Alignment:
Q  52 tgcgttcacggtttcggttttgatcctttatccggtgattacaaactcctcagaatc 108  Q
    |||||| |||| |||||||||||||| ||| | | ||||||||||||||||| ||||    
T  29423759 tgcgtttacggcttcggttttgatccattaactgatgattacaaactcctcacaatc 29423703  T

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