View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8514_low_1 (Length: 392)

Name: NF8514_low_1
Description: NF8514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8514_low_1
NF8514_low_1
[»] scaffold0062 (4 HSPs)
scaffold0062 (324-378)||(48651-48705)
scaffold0062 (324-378)||(61190-61244)
scaffold0062 (324-378)||(63918-63972)
scaffold0062 (324-378)||(73309-73363)
[»] chr8 (1 HSPs)
chr8 (324-378)||(18692000-18692054)
[»] chr2 (4 HSPs)
chr2 (324-378)||(15699739-15699793)
chr2 (324-378)||(15712278-15712332)
chr2 (324-378)||(15724756-15724810)
chr2 (62-149)||(35905846-35905933)
[»] chr6 (1 HSPs)
chr6 (62-150)||(2281537-2281625)
[»] chr5 (1 HSPs)
chr5 (60-147)||(18939856-18939944)
[»] chr7 (3 HSPs)
chr7 (60-150)||(36966611-36966701)
chr7 (60-147)||(2764440-2764526)
chr7 (175-219)||(25184546-25184590)
[»] chr4 (1 HSPs)
chr4 (13-149)||(55280491-55280628)
[»] chr3 (1 HSPs)
chr3 (72-147)||(40489322-40489397)


Alignment Details
Target: scaffold0062 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 324 - 378
Target Start/End: Complemental strand, 48705 - 48651
Alignment:
Q  324 cagcatagtaattaaaggaaatatgatggtatttattaatagaatgggaaaaaac 378  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48705 cagcatagtaattaaaggaaatatgatggtatttattaatagaatgggaaaaaac 48651  T

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Target: scaffold0062; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 324 - 378
Target Start/End: Complemental strand, 61244 - 61190
Alignment:
Q  324 cagcatagtaattaaaggaaatatgatggtatttattaatagaatgggaaaaaac 378  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  61244 cagcatagtaattaaaggaaatatgatggtatttattaatagaatgggaaaaaac 61190  T

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Target: scaffold0062; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 324 - 378
Target Start/End: Complemental strand, 63972 - 63918
Alignment:
Q  324 cagcatagtaattaaaggaaatatgatggtatttattaatagaatgggaaaaaac 378  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  63972 cagcatagtaattaaaggaaatatgatggtatttattaatagaatgggaaaaaac 63918  T

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Target: scaffold0062; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 324 - 378
Target Start/End: Complemental strand, 73363 - 73309
Alignment:
Q  324 cagcatagtaattaaaggaaatatgatggtatttattaatagaatgggaaaaaac 378  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  73363 cagcatagtaattaaaggaaatatgatggtatttattaatagaatgggaaaaaac 73309  T

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Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 324 - 378
Target Start/End: Complemental strand, 18692054 - 18692000
Alignment:
Q  324 cagcatagtaattaaaggaaatatgatggtatttattaatagaatgggaaaaaac 378  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18692054 cagcatagtaattaaaggaaatatgatggtatttattaatagaatgggaaaaaac 18692000  T

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Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 324 - 378
Target Start/End: Complemental strand, 15699793 - 15699739
Alignment:
Q  324 cagcatagtaattaaaggaaatatgatggtatttattaatagaatgggaaaaaac 378  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15699793 cagcatagtaattaaaggaaatatgatggtatttattaatagaatgggaaaaaac 15699739  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 324 - 378
Target Start/End: Complemental strand, 15712332 - 15712278
Alignment:
Q  324 cagcatagtaattaaaggaaatatgatggtatttattaatagaatgggaaaaaac 378  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15712332 cagcatagtaattaaaggaaatatgatggtatttattaatagaatgggaaaaaac 15712278  T

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Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 324 - 378
Target Start/End: Complemental strand, 15724810 - 15724756
Alignment:
Q  324 cagcatagtaattaaaggaaatatgatggtatttattaatagaatgggaaaaaac 378  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15724810 cagcatagtaattaaaggaaatatgatggtatttattaatagaatgggaaaaaac 15724756  T

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Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 62 - 149
Target Start/End: Original strand, 35905846 - 35905933
Alignment:
Q  62 tgtgttggtaaatttgactgttcaggttccacataaaaagataatttattcttccgcatattccgttttgcacactctgatcccaaca 149  Q
    |||||||||||||| || ||||||||||||||| ||| ||||||||||  ||||||||||||||| | ||| ||||||||| ||||||    
T  35905846 tgtgttggtaaattggattgttcaggttccacaaaaagagataatttaagcttccgcatattccgctctgcgcactctgattccaaca 35905933  T

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Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 62 - 150
Target Start/End: Original strand, 2281537 - 2281625
Alignment:
Q  62 tgtgttggtaaatttgactgttcaggttccacataaaaagataatttattcttccgcatattccgttttgcacactctgatcccaacac 150  Q
    |||| ||||||||| || ||||||||||||||| ||| ||||||||||  |||||||| |||||||||||| ||| |||||||||||||    
T  2281537 tgtgctggtaaattggattgttcaggttccacaaaaagagataatttaagcttccgcagattccgttttgcgcacactgatcccaacac 2281625  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 60 - 147
Target Start/End: Original strand, 18939856 - 18939944
Alignment:
Q  60 gttgtgttggtaaatttgactgttcaggttccacat-aaaaagataatttattcttccgcatattccgttttgcacactctgatcccaa 147  Q
    |||||| |||||||||||| ||||||| |||||||  ||||||||||||||  |||| |||||||  || |||||||||||||||||||    
T  18939856 gttgtgctggtaaatttgattgttcagattccacaagaaaaagataatttaagcttctgcatattttgtattgcacactctgatcccaa 18939944  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 60 - 150
Target Start/End: Complemental strand, 36966701 - 36966611
Alignment:
Q  60 gttgtgttggtaaatttgactgttcaggttccacataaaaagataatttattcttccgcatattccgttttgcacactctgatcccaacac 150  Q
    |||||| ||||| ||| || ||||||||||| ||| ||| |||||||| || |||||||| |||||  ||||| |||||||||||||||||    
T  36966701 gttgtgctggtatattggattgttcaggttctacaaaaagagataattcatgcttccgcacattccactttgcgcactctgatcccaacac 36966611  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 60 - 147
Target Start/End: Complemental strand, 2764526 - 2764440
Alignment:
Q  60 gttgtgttggtaaatttgactgttcaggttccacataaaaagataatttattcttccgcatattccgttttgcacactctgatcccaa 147  Q
    |||||| ||||||||| || ||||||| ||||||| ||||||||||||||  ||||| ||||||||   |||| ||||||||||||||    
T  2764526 gttgtgctggtaaattggattgttcagattccaca-aaaaagataatttaagcttccacatattcctcattgcgcactctgatcccaa 2764440  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 219
Target Start/End: Complemental strand, 25184590 - 25184546
Alignment:
Q  175 ttatcttacttttaacatttgaaagaatgaaacttgttttatcgt 219  Q
    |||||||| |||||||||||||| | ||||||||| |||||||||    
T  25184590 ttatcttaattttaacatttgaacggatgaaacttcttttatcgt 25184546  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 149
Target Start/End: Original strand, 55280491 - 55280628
Alignment:
Q  13 tttggtgttctggtctatagtttttattcctttttattgttgctact-gttgtgttggtaaatttgactgttcaggttccacataaaaagataatttatt 111  Q
    |||||||||||  | || ||| |||| ||||||||||||||| | || |||||| |||||||||     ||||| |||||||| ||| ||||||||||      
T  55280491 tttggtgttctcatttacagtatttactcctttttattgttgttgctggttgtgctggtaaattaagtcgttcaagttccacaaaaagagataatttaaa 55280590  T
Q  112 cttccgcatattccgttttgcacactctgatcccaaca 149  Q
    |||| ||||||| |||||||| |||||| |||||||||    
T  55280591 cttctgcatattgcgttttgcgcactctaatcccaaca 55280628  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 147
Target Start/End: Original strand, 40489322 - 40489397
Alignment:
Q  72 aatttgactgttcaggttccacataaaaagataatttattcttccgcatattccgttttgcacactctgatcccaa 147  Q
    ||||||| |||||| ||| |||| ||| |||||||  |  ||||||| |||||||| |||||||||||||||||||    
T  40489322 aatttgattgttcaagtttcacaaaaagagataatccaagcttccgcttattccgtattgcacactctgatcccaa 40489397  T

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