View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8514_low_2 (Length: 278)
Name: NF8514_low_2
Description: NF8514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8514_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 16 - 144
Target Start/End: Original strand, 54880588 - 54880716
Alignment:
| Q |
16 |
caaggaacatgtaggctatagctaattccatgtgaatgtgaatgttagacaaacatgtgttatgtatacaaacactcaagctctatttctttgtgatggt |
115 |
Q |
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| T |
54880588 |
caaggaacatgtaggctatagctaattccatgtgaatgtgaatgttagacaaacatgtgttatgtatacaaacactcaagctctatttctttgtgatggt |
54880687 |
T |
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| Q |
116 |
aatagaaatagaaaagaaatccaggtgct |
144 |
Q |
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| T |
54880688 |
aatagtaatagaaaagaaatcctggtgct |
54880716 |
T |
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Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 220 - 269
Target Start/End: Original strand, 54880715 - 54880764
Alignment:
| Q |
220 |
ctacttatcaggaattggccagtttgaagaaattataatggaagtattat |
269 |
Q |
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| T |
54880715 |
ctacttatcaggaattggccagtttgaagaaattataatggaagtgttat |
54880764 |
T |
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