View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8515_low_1 (Length: 444)

Name: NF8515_low_1
Description: NF8515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8515_low_1
NF8515_low_1
[»] chr3 (14 HSPs)
chr3 (16-224)||(8794279-8794487)
chr3 (233-429)||(8795479-8795675)
chr3 (310-426)||(18680636-18680752)
chr3 (286-426)||(42339915-42340055)
chr3 (287-426)||(16194073-16194212)
chr3 (287-404)||(29306391-29306507)
chr3 (287-402)||(33282882-33282997)
chr3 (312-402)||(36260998-36261088)
chr3 (308-407)||(34629877-34629968)
chr3 (302-417)||(43369974-43370087)
chr3 (336-389)||(7579541-7579594)
chr3 (336-402)||(39028813-39028877)
chr3 (310-402)||(30299587-30299678)
chr3 (338-402)||(47731178-47731242)
[»] chr6 (6 HSPs)
chr6 (242-426)||(11785799-11785983)
chr6 (286-429)||(2391543-2391686)
chr6 (308-417)||(11752010-11752118)
chr6 (225-417)||(10479440-10479632)
chr6 (313-420)||(10629017-10629124)
chr6 (322-394)||(23888011-23888083)
[»] chr8 (16 HSPs)
chr8 (287-426)||(11175533-11175672)
chr8 (225-426)||(15174983-15175183)
chr8 (302-426)||(1824284-1824407)
chr8 (302-426)||(1858729-1858852)
chr8 (302-387)||(9555212-9555297)
chr8 (287-426)||(35170980-35171119)
chr8 (301-418)||(31447020-31447137)
chr8 (287-429)||(4606067-4606206)
chr8 (287-419)||(10839971-10840102)
chr8 (301-417)||(45537838-45537953)
chr8 (287-389)||(16816200-16816302)
chr8 (307-363)||(26601066-26601122)
chr8 (320-381)||(40112831-40112892)
chr8 (287-425)||(43915600-43915738)
chr8 (388-425)||(26601032-26601069)
chr8 (326-426)||(26916095-26916195)
[»] chr1 (16 HSPs)
chr1 (225-426)||(31064874-31065081)
chr1 (301-426)||(31165832-31165957)
chr1 (287-426)||(14579235-14579374)
chr1 (302-424)||(39984749-39984871)
chr1 (301-426)||(11581545-11581672)
chr1 (242-419)||(15183564-15183742)
chr1 (308-417)||(35307009-35307118)
chr1 (299-426)||(27458456-27458576)
chr1 (290-426)||(6568043-6568179)
chr1 (302-419)||(20710737-20710854)
chr1 (302-418)||(15939324-15939440)
chr1 (302-397)||(15947709-15947804)
chr1 (302-397)||(28292496-28292591)
chr1 (286-399)||(26801445-26801558)
chr1 (322-386)||(42241860-42241924)
chr1 (336-387)||(46798195-46798246)
[»] chr2 (15 HSPs)
chr2 (286-425)||(5187739-5187878)
chr2 (287-426)||(9298600-9298738)
chr2 (287-427)||(21436885-21437025)
chr2 (287-426)||(10221710-10221854)
chr2 (242-417)||(18704505-18704680)
chr2 (287-402)||(1130598-1130712)
chr2 (302-389)||(931122-931209)
chr2 (308-389)||(21508797-21508878)
chr2 (320-419)||(17200783-17200882)
chr2 (301-402)||(35716401-35716502)
chr2 (312-400)||(41959855-41959947)
chr2 (308-418)||(33721359-33721469)
chr2 (353-417)||(9158622-9158686)
chr2 (301-402)||(11862438-11862539)
chr2 (340-429)||(16216528-16216617)
[»] chr7 (11 HSPs)
chr7 (302-426)||(29408034-29408158)
chr7 (287-426)||(47084740-47084878)
chr7 (302-418)||(34596115-34596231)
chr7 (315-391)||(39983558-39983634)
chr7 (301-387)||(30053684-30053770)
chr7 (302-426)||(32297326-32297449)
chr7 (302-402)||(32450394-32450494)
chr7 (336-383)||(19048529-19048576)
chr7 (302-389)||(37204710-37204797)
chr7 (320-389)||(3839142-3839211)
chr7 (353-389)||(32438047-32438083)
[»] chr4 (18 HSPs)
chr4 (310-426)||(5750598-5750714)
chr4 (310-426)||(56094137-56094255)
chr4 (302-427)||(867683-867812)
chr4 (288-383)||(48546755-48546850)
chr4 (290-417)||(23480643-23480769)
chr4 (302-414)||(24195073-24195185)
chr4 (302-417)||(3161389-3161505)
chr4 (328-402)||(26644827-26644901)
chr4 (287-427)||(35293053-35293190)
chr4 (340-417)||(22097307-22097384)
chr4 (302-363)||(24273919-24273980)
chr4 (373-417)||(2819024-2819068)
chr4 (353-389)||(26003923-26003959)
chr4 (302-418)||(56361138-56361254)
chr4 (340-414)||(51983546-51983621)
chr4 (353-402)||(7556087-7556136)
chr4 (339-400)||(47808865-47808926)
chr4 (308-417)||(18521428-18521539)
[»] chr5 (11 HSPs)
chr5 (302-426)||(16600328-16600452)
chr5 (309-426)||(33401684-33401801)
chr5 (302-426)||(5474101-5474225)
chr5 (336-429)||(17053711-17053804)
chr5 (292-396)||(932483-932587)
chr5 (308-418)||(27499432-27499541)
chr5 (309-417)||(12920521-12920629)
chr5 (340-389)||(278964-279013)
chr5 (301-402)||(34366922-34367023)
chr5 (308-387)||(8822263-8822342)
chr5 (353-413)||(5552412-5552472)
[»] scaffold0001 (1 HSPs)
scaffold0001 (308-414)||(508288-508394)


Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 224
Target Start/End: Original strand, 8794279 - 8794487
Alignment:
Q  16 ttcagttgttgaggagaacggtgagtagcacaactcccgtttgaatggtctgattgaattagcagtgcatgagcatgaaaccatgggaagaattgataca 115  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  8794279 ttcagttgttgaggagaacgctgagtagcacaactcccgtttgaatggtctgattgaattagcagttcatgagcatgaaatcatgggaagaattgataca 8794378  T
Q  116 atgggtaaggttcaacattttggatgcaactcccctgttttagaaattgtctaccatcaatgcctcgccttctcaggttgcaactgccctagaagcacaa 215  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  8794379 atgggtaaggttcaacattttggatgcaactcccctattttagaaattgtctaccattaatgcctcgccttctcaagttgcaactgccctagaagcacaa 8794478  T
Q  216 tttcatgca 224  Q
    |||||||||    
T  8794479 tttcatgca 8794487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 233 - 429
Target Start/End: Original strand, 8795479 - 8795675
Alignment:
Q  233 atttgtgatc-tttaagttacatgattataactagttagttatttaannnnnnnagttacaaatttgttctttaattcataaaatatttgcaccattatc 331  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||       ||||| |||||||| |||||| ||||||||||||||||||||||||    
T  8795479 atttgtgatcctttaagttacataattataactagttagttatttaattttcttagttataaatttgtcctttaagtcataaaatatttgcaccattatc 8795578  T
Q  332 ctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattcattgctctcaaaactagagctcataagt 429  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8795579 ctaatttcatcaaactcaatcaaaaagtgtt-atgtggatgtttaatgttaagttggtttgtccaaattcattgctctcaaaactagagctcataagt 8795675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 310 - 426
Target Start/End: Original strand, 18680636 - 18680752
Alignment:
Q  310 ataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattcattgctct 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||    
T  18680636 ataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttgtatggatgtttaatgttaagttggtttgtccaaattaattgctct 18680735  T
Q  410 caaaactagagctcata 426  Q
    |||||||| ||||||||    
T  18680736 caaaactaaagctcata 18680752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 286 - 426
Target Start/End: Complemental strand, 42340055 - 42339915
Alignment:
Q  286 agttacaaatttgttctttaattcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagt 385  Q
    ||||||||||| ||  ||||  |||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||    
T  42340055 agttacaaattggtcatttatgtcataaaatatttgcaccattatcctaatttcgtcaaactcaaacaaaaaatgtttatgtggatgtttaatgttaagt 42339956  T
Q  386 tggtttgtccaaattcattgctctcaaaactagagctcata 426  Q
    | || |||||||||||||||||||||||||||||| |||||    
T  42339955 tcgtctgtccaaattcattgctctcaaaactagagttcata 42339915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 287 - 426
Target Start/End: Original strand, 16194073 - 16194212
Alignment:
Q  287 gttacaaatttgttctttaattcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagtt 386  Q
    |||| ||||| || |||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||| |||||||||||||| |||||||    
T  16194073 gttagaaattggtcctttaaatcataaaatatttgcatcattatcctaatttcatcaaattcaatcaaaaaatgtttttgtggatgtttaatattaagtt 16194172  T
Q  387 ggtttgtccaaattcattgctctcaaaactagagctcata 426  Q
    ||||||||||||||||| ||||| ||||||||||||||||    
T  16194173 ggtttgtccaaattcatagctcttaaaactagagctcata 16194212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 287 - 404
Target Start/End: Complemental strand, 29306507 - 29306391
Alignment:
Q  287 gttacaaatttgttctttaattcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagtt 386  Q
    |||||||||| || |||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||    
T  29306507 gttacaaattggt-ctttaagtcataaaatatttacaccattatcctaatttcatcaaacttaatcaaaaagcgtttatatggatgtttaatgttaagtt 29306409  T
Q  387 ggtttgtccaaattcatt 404  Q
    ||||||||||||||||||    
T  29306408 ggtttgtccaaattcatt 29306391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 287 - 402
Target Start/End: Complemental strand, 33282997 - 33282882
Alignment:
Q  287 gttacaaatttgttctttaattcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagtt 386  Q
    |||||||||| || |||||| |||||||| |||  || ||||||| || ||| |||||||||| | |||||||||||||||||| |||||||||||||||    
T  33282997 gttacaaattggtcctttaagtcataaaacattcacatcattatcatattttaatcaaactcagttaaaaagtgtttatgtggacgtttaatgttaagtt 33282898  T
Q  387 ggtttgtccaaattca 402  Q
    |||  ||| |||||||    
T  33282897 ggtaggtctaaattca 33282882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 312 - 402
Target Start/End: Complemental strand, 36261088 - 36260998
Alignment:
Q  312 aaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattca 402  Q
    ||||||| |||||||| |||||| |||||||||||||  | ||||||||||||| ||||  ||||||||||||| ||| ||||||||||||    
T  36261088 aaaatatatgcaccatgatcctattttcatcaaactctgttaaaaagtgtttatttggacatttaatgttaagtaggtatgtccaaattca 36260998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 308 - 407
Target Start/End: Original strand, 34629877 - 34629968
Alignment:
Q  308 tcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattcattgct 407  Q
    ||||||||||| || |||||||||||||||||||        | |||||||||||||||||||||||||||| ||||||| ||||| |||| ||||||||    
T  34629877 tcataaaatatatgtaccattatcctaatttcat--------accaaaaagtgtttatgtggatgtttaatggtaagttgatttgtacaaactcattgct 34629968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 302 - 417
Target Start/End: Complemental strand, 43370087 - 43369974
Alignment:
Q  302 tttaattcataaaatatttgcaccattatcctaatttcatcaaactcaatc-aaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaatt 400  Q
    ||||| || |||||||||||||||||| | |||||||||||||||| | || ||||| | ||| ||| |||||||||||   ||||| ||||||||||||    
T  43370087 tttaagtcgtaaaatatttgcaccatttttctaatttcatcaaactaagtcaaaaaaatatttgtgtagatgtttaatg---agttgatttgtccaaatt 43369991  T
Q  401 cattgctctcaaaacta 417  Q
    || | ||||||||||||    
T  43369990 cactactctcaaaacta 43369974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 336 - 389
Target Start/End: Complemental strand, 7579594 - 7579541
Alignment:
Q  336 tttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggt 389  Q
    |||||||||||||||| |||| |||||||||| || ||||||||||||||||||    
T  7579594 tttcatcaaactcaattaaaaggtgtttatgttgacgtttaatgttaagttggt 7579541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 402
Target Start/End: Complemental strand, 39028877 - 39028813
Alignment:
Q  336 tttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattca 402  Q
    |||||||||||||  | ||||||||||||||| ||||||||||||||||||  | ||||||||||||    
T  39028877 tttcatcaaactc--ttaaaaagtgtttatgtagatgtttaatgttaagtttatatgtccaaattca 39028813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 402
Target Start/End: Original strand, 30299587 - 30299678
Alignment:
Q  310 ataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattca 402  Q
    |||||||||||||| |||| ||||| |||||| ||||||| | ||||| | ||||||| || ||||||||||| |||| | | ||||||||||    
T  30299587 ataaaatatttgcatcattgtcctattttcataaaactcatttaaaaaatatttatgt-gacgtttaatgttacgttgttatttccaaattca 30299678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 338 - 402
Target Start/End: Complemental strand, 47731242 - 47731178
Alignment:
Q  338 tcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattca 402  Q
    |||||||||| ||| ||||||||||||| |||| |||||||||||||| ||| | | ||||||||    
T  47731242 tcatcaaacttaattaaaaagtgtttatatggacgtttaatgttaagtcggtattttcaaattca 47731178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 116; Significance: 7e-59; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 242 - 426
Target Start/End: Complemental strand, 11785983 - 11785799
Alignment:
Q  242 ctttaagttacatgattataactagttagttatttaannnnnnnagttacaaatttgttctttaattcataaaatatttgcaccattatcctaatttcat 341  Q
    ||||||||||||||||||| || |||||||  |||||       ||||| |||||  | |||||| ||||||||||||||||||||||||||||||||||    
T  11785983 ctttaagttacatgattatgacaagttagtactttaatttttttagttataaattgatcctttaagtcataaaatatttgcaccattatcctaatttcat 11785884  T
Q  342 caaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattcattgctctcaaaactagagctcata 426  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  11785883 cacactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattcattgctctcaaaactaaaactcata 11785799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 286 - 429
Target Start/End: Complemental strand, 2391686 - 2391543
Alignment:
Q  286 agttacaaatttgttctttaattcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagt 385  Q
    |||||||||||  | |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  2391686 agttacaaattgatcctttaagtcataaaatatttgcaccattaccctaatttcatcaaactcaatcaaaaagtatttatgtggatatttaatgttaagt 2391587  T
Q  386 tggtttgtccaaattcattgctctcaaaactagagctcataagt 429  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  2391586 tggtttgtccaaattcattgctctcaaaactagagcttataagt 2391543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 308 - 417
Target Start/End: Complemental strand, 11752118 - 11752010
Alignment:
Q  308 tcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattcattgct 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  11752118 tcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaatgtg-ttatgtggatgtttaatgttaagttggtttgtccaaatttattgct 11752020  T
Q  408 ctcaaaacta 417  Q
     |||||||||    
T  11752019 atcaaaacta 11752010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 225 - 417
Target Start/End: Original strand, 10479440 - 10479632
Alignment:
Q  225 caaataccatttgtgatctttaagttacatgattataactagttagttatttaannnnnnnagttacaaatttgttctttaattcataaaatatttgcac 324  Q
    |||||||||||| || ||||||||||| ||||||||||| || || || |||||        | |||||||| ||  ||||| | |||||||||||| ||    
T  10479440 caaataccatttctgctctttaagttagatgattataacaagataattctttaagtttttttgatacaaattggtcttttaaataataaaatatttgtac 10479539  T
Q  325 cattatcctaatttcatcaaactcaatcaaaaa-gtgtttatgtggatgtttaatgttaagttggtttgtccaaattcattgctctcaaaacta 417  Q
    | ||||||||||||||||||||||| |||||||  ||||| |||||||||||||||||||||| | ||||||||||||| | |||| |||||||    
T  10479540 ctttatcctaatttcatcaaactcagtcaaaaacatgtttgtgtggatgtttaatgttaagtt-gattgtccaaattcactactcttaaaacta 10479632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 313 - 420
Target Start/End: Complemental strand, 10629124 - 10629017
Alignment:
Q  313 aaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattcattgctctcaa 412  Q
    ||||||||||| |||||| ||| ||||| ||||||| || |||||  |||||||| |||||| ||| |||||||| | ||||||||||||||| ||||||    
T  10629124 aaatatttgcatcattattctattttcaccaaactcgattaaaaaaagtttatgttgatgttcaatattaagttgatatgtccaaattcattgttctcaa 10629025  T
Q  413 aactagag 420  Q
    ||||||||    
T  10629024 aactagag 10629017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 394
Target Start/End: Original strand, 23888011 - 23888083
Alignment:
Q  322 caccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtc 394  Q
    |||||||| |||  ||||||||||| ||||  |||| ||||||||||| |||| |||| ||||||||| ||||    
T  23888011 caccattacccttttttcatcaaacacaattcaaaactgtttatgtggttgttcaatgataagttggtatgtc 23888083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 108; Significance: 4e-54; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 287 - 426
Target Start/End: Complemental strand, 11175672 - 11175533
Alignment:
Q  287 gttacaaatttgttctttaattcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagtt 386  Q
    |||||||||| ||  ||||| || |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  11175672 gttacaaattggtcatttaagtcgtaaaatatttgcaccattatcctaattttatcaaacttaatcaaaaagtgtttatgtggatgtttaatgttaagtt 11175573  T
Q  387 ggtttgtccaaattcattgctctcaaaactagagctcata 426  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  11175572 ggtttgtccaaattctttgctctcaaaactagagctcata 11175533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 225 - 426
Target Start/End: Original strand, 15174983 - 15175183
Alignment:
Q  225 caaataccatttgtgatcttt-aagttacatgattataactagttagttatttaannnnnnn-agttacaaatttgttctttaattcataaaatatttgc 322  Q
    |||||||||||| || ||||| |||||| ||||||||||| |||||||  |||||        ||||| |||||||| |||||| |||||||||||||||    
T  15174983 caaataccatttatggtcttttaagttatatgattataacaagttagtcctttaaatttttttagttataaatttgtcctttaagtcataaaatatttgc 15175082  T
Q  323 accattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattcattgctctcaaaactagagct 422  Q
    |||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||   |||||||| |||||||||||    
T  15175083 accattattctaatttcatcaaactcaatcaaacaatgtttatgtggatgtttaatgttaagttggtttgtctaaat---ttgctctcgaaactagagct 15175179  T
Q  423 cata 426  Q
    ||||    
T  15175180 cata 15175183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 302 - 426
Target Start/End: Complemental strand, 1824407 - 1824284
Alignment:
Q  302 tttaattcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattc 401  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||  |||||| ||||| ||||||||||||||||||||||| |||||| |||||||    
T  1824407 tttaagtcataaaatatttgcactattatcctaatttcatcaaactcggtcaaaaggtgtt-atgtggatgtttaatgttaagtttgtttgttcaaattc 1824309  T
Q  402 attgctctcaaaactagagctcata 426  Q
    |||||||| ||||||||||||||||    
T  1824308 attgctctaaaaactagagctcata 1824284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 302 - 426
Target Start/End: Complemental strand, 1858852 - 1858729
Alignment:
Q  302 tttaattcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattc 401  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||  |||||| ||||| ||||||||||||||||||||||| |||||| |||||||    
T  1858852 tttaagtcataaaatatttgcactattatcctaatttcatcaaactcggtcaaaaggtgtt-atgtggatgtttaatgttaagtttgtttgttcaaattc 1858754  T
Q  402 attgctctcaaaactagagctcata 426  Q
    |||||||| ||||||||||||||||    
T  1858753 attgctctaaaaactagagctcata 1858729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 302 - 387
Target Start/End: Complemental strand, 9555297 - 9555212
Alignment:
Q  302 tttaattcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttg 387  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9555297 tttaagtcataaaatatttgcaccagtatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttg 9555212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 287 - 426
Target Start/End: Complemental strand, 35171119 - 35170980
Alignment:
Q  287 gttacaaatttgttctttaattcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagtt 386  Q
    |||||||||| ||  ||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| | | ||||||||||| ||||||    
T  35171119 gttacaaattggtcatttaagtcataaaatatatgcaccattatcctaatttcatcaaactcagtcaaaaagtgtttgtatagatgtttaatgctaagtt 35171020  T
Q  387 ggtttgtccaaattcattgctctcaaaactagagctcata 426  Q
    | |||||||||||||| | |||| |||| ||| |||||||    
T  35171019 gatttgtccaaattcacttctcttaaaattagggctcata 35170980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 301 - 418
Target Start/End: Original strand, 31447020 - 31447137
Alignment:
Q  301 ctttaattcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaatt 400  Q
    |||||| ||||||||||||||||| |||||| |||||| | |||||||  ||||||||||||| ||||| ||||||||||||||||| ||||||||||||    
T  31447020 ctttaagtcataaaatatttgcactattatcttaatttaaccaaactccgtcaaaaagtgtttgtgtgggtgtttaatgttaagttgatttgtccaaatt 31447119  T
Q  401 cattgctctcaaaactag 418  Q
    ||  ||||||||||||||    
T  31447120 caccgctctcaaaactag 31447137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 287 - 429
Target Start/End: Original strand, 4606067 - 4606206
Alignment:
Q  287 gttacaaatttgttctttaattcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagtt 386  Q
    ||||||| || ||||||||| |||||||||| |||||| |||||| || ||||| |||||||||| ||||| || ||||||   ||||||||||||||||    
T  4606067 gttacaatttggttctttaagtcataaaatacttgcacaattatcttattttcaccaaactcaattaaaaaatggttatgt---tgtttaatgttaagtt 4606163  T
Q  387 ggtttgtccaaattcattgctctcaaaactagagctcataagt 429  Q
    ||| |||||||||||||   ||| |||||||| | ||||||||    
T  4606164 ggtatgtccaaattcatccatcttaaaactagggttcataagt 4606206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 287 - 419
Target Start/End: Complemental strand, 10840102 - 10839971
Alignment:
Q  287 gttacaaatttgttctttaattcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagtt 386  Q
    |||||||||| || ||||||   ||||| ||| |||||||||||| || |||||||||||||  | |||| ||||||||||||| |||| ||||||||||    
T  10840102 gttacaaattagtcctttaaaatataaagtatatgcaccattatcttattttcatcaaactcggttaaaa-gtgtttatgtggacgttttatgttaagtt 10840004  T
Q  387 ggtttgtccaaattcattgctctcaaaactaga 419  Q
    | | |||||||||||| ||| ||||||||||||    
T  10840003 gatatgtccaaattcactgcactcaaaactaga 10839971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 301 - 417
Target Start/End: Complemental strand, 45537953 - 45537838
Alignment:
Q  301 ctttaattcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaatt 400  Q
    |||||| ||||||||| | ||||| |||||| || |||||||||||||  | ||||| | ||||||||||| ||||||||||| |||||  |||||||||    
T  45537953 ctttaagtcataaaatctctgcactattatcatattttcatcaaactcggttaaaaaatatttatgtggat-tttaatgttaaattggtaggtccaaatt 45537855  T
Q  401 cattgctctcaaaacta 417  Q
    ||| |||||||||||||    
T  45537854 catcgctctcaaaacta 45537838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 287 - 389
Target Start/End: Complemental strand, 16816302 - 16816200
Alignment:
Q  287 gttacaaatttgttctttaattcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagtt 386  Q
    |||| ||||| || |||||| ||||||||||| | || |||||| ||||||||||||||||| || ||||| | ||||||||||  ||||||||||||||    
T  16816302 gttataaattggtcctttaagtcataaaatatctacatcattattctaatttcatcaaactcgattaaaaaatatttatgtggacatttaatgttaagtt 16816203  T
Q  387 ggt 389  Q
    |||    
T  16816202 ggt 16816200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 307 - 363
Target Start/End: Complemental strand, 26601122 - 26601066
Alignment:
Q  307 ttcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgttt 363  Q
    |||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  26601122 ttcatacaatatttgcaccattatcttaattttatcaaactcaatcaaaaagtgttt 26601066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 320 - 381
Target Start/End: Complemental strand, 40112892 - 40112831
Alignment:
Q  320 tgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgtt 381  Q
    |||||||||||| || |||||||||||||||| ||||||||||||| || ||||||||||||    
T  40112892 tgcaccattatcttattttcatcaaactcaattaaaaagtgtttatatgaatgtttaatgtt 40112831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 287 - 425
Target Start/End: Complemental strand, 43915738 - 43915600
Alignment:
Q  287 gttacaaatttgttctttaattcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagtt 386  Q
    |||| ||||| ||||||||| ||||||||||| | ||||||||| ||| |||||||||| |   | ||| ||||| |||||| | | |||||||||||||    
T  43915738 gttataaattggttctttaagtcataaaatatctacaccattattctattttcatcaaattatgttaaatagtgtgtatgtgtacgattaatgttaagtt 43915639  T
Q  387 ggtttgtccaaattcattgctctcaaaactagagctcat 425  Q
     |  || ||||||||| | |||| |||||||||| ||||    
T  43915638 agcatgcccaaattcactcctcttaaaactagagttcat 43915600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 388 - 425
Target Start/End: Complemental strand, 26601069 - 26601032
Alignment:
Q  388 gtttgtccaaattcattgctctcaaaactagagctcat 425  Q
    |||||||||||||||||||||| |||||||||||||||    
T  26601069 gtttgtccaaattcattgctctaaaaactagagctcat 26601032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 426
Target Start/End: Original strand, 26916095 - 26916195
Alignment:
Q  326 attatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattcattgctctcaaaactagagctcat 425  Q
    ||||| ||| ||||||||||||| || ||||||||||||| || | |||||||  ||| ||  | ||| ||||||||| ||||||||||||| || ||||    
T  26916095 attattctattttcatcaaactcgattaaaaagtgtttatttgaacgtttaatactaaattcatatgttcaaattcatcgctctcaaaactatagttcat 26916194  T
Q  426 a 426  Q
    |    
T  26916195 a 26916195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 2e-53; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 225 - 426
Target Start/End: Original strand, 31064874 - 31065081
Alignment:
Q  225 caaataccatttgtgatc-tttaagttacatgattataactagttagttatttaannnnnnnagttacaaatttgttctttaattcataaaatatttgca 323  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||| | |||||        ||||||||||  | |||||| || |||||||||||||    
T  31064874 caaataccatttgtgatcctttaagttacatgattataacaagttagatctttaattttttttgttacaaattgatcctttaagtcgtaaaatatttgca 31064973  T
Q  324 ccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattc-----attgctctcaaaactag 418  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||     |||||||||||||||||    
T  31064974 caattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttatgtttggttgtccaaattcattatattgctctcaaaactag 31065073  T
Q  419 agctcata 426  Q
    ||||||||    
T  31065074 agctcata 31065081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 301 - 426
Target Start/End: Complemental strand, 31165957 - 31165832
Alignment:
Q  301 ctttaattcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaatt 400  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31165957 ctttaagtcataaaatatttgcaccattatcttaatttcatcaaacaaaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaatt 31165858  T
Q  401 cattgctctcaaaactagagctcata 426  Q
    ||||||||||||||||| ||||||||    
T  31165857 cattgctctcaaaactaaagctcata 31165832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 287 - 426
Target Start/End: Complemental strand, 14579374 - 14579235
Alignment:
Q  287 gttacaaatttgttctttaattcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagtt 386  Q
    |||||||||| ||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||    
T  14579374 gttacaaattggtcttttaagtcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaagagtgtttatgtagatgtttaatgttaaatt 14579275  T
Q  387 ggtttgtccaaattcattgctctcaaaactagagctcata 426  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  14579274 ggtttctccaaattcattgctctcaaacctagagctcata 14579235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 302 - 424
Target Start/End: Original strand, 39984749 - 39984871
Alignment:
Q  302 tttaattcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattc 401  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  39984749 tttaagtcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaaatgtttatgtggatgtttaatgttaagttggtttatccaaattc 39984848  T
Q  402 attgctctcaaaactagagctca 424  Q
    ||||| |||||||||| ||||||    
T  39984849 attgccctcaaaactaaagctca 39984871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 301 - 426
Target Start/End: Complemental strand, 11581672 - 11581545
Alignment:
Q  301 ctttaattcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaa--tgttaagttggtttgtccaaa 398  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||| ||||  |||||||||||||||||||||    
T  11581672 ctttaagtcataaaatatttgcatcattatcctaatttcatcaaacttaatcaaaaagtatttatgtggatgcttaatgtgttaagttggtttgtccaaa 11581573  T
Q  399 ttcattgctctcaaaactagagctcata 426  Q
    ||||||||||||||||||| ||||||||    
T  11581572 ttcattgctctcaaaactatagctcata 11581545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 242 - 419
Target Start/End: Original strand, 15183564 - 15183742
Alignment:
Q  242 ctttaagttacatgattataactagttagttatttaannnnnnnagttacaaatttgttcttt-aattcataaaatatttgcaccattatcctaatttca 340  Q
    |||||||||||||||||||||| |||||||  |||||        |||||||||| || |||| || ||||||||||||| || ||||||| ||||||||    
T  15183564 ctttaagttacatgattataacaagttagtcctttaagtttttttgttacaaattggtccttttaagtcataaaatatttacatcattatcttaatttca 15183663  T
Q  341 tcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattcattgctctcaaaactaga 419  Q
    ||||||| ||||||||||||||||||| ||| ||||||||||||||||||| || ||||||||||||||||||||||||    
T  15183664 tcaaacttaatcaaaaagtgtttatgtagatttttaatgttaagttggtttatctaaattcattgctctcaaaactaga 15183742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 308 - 417
Target Start/End: Original strand, 35307009 - 35307118
Alignment:
Q  308 tcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattcattgct 407  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  35307009 tcataaaatatttgcatcattatcctaatttcatcaaactcaatcacaatgtgtttatgtggatgtttaatgataagttggtttgttcaaattcattgct 35307108  T
Q  408 ctcaaaacta 417  Q
    ||||||||||    
T  35307109 ctcaaaacta 35307118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 299 - 426
Target Start/End: Complemental strand, 27458576 - 27458456
Alignment:
Q  299 ttctttaattcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaa 398  Q
    |||||||| |||||||||||| |||||||||||||||||||||       |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27458576 ttctttaaatcataaaatattagcaccattatcctaatttcat-------aatcaaaaagtgtttatgtggatgcttaatgttaagttggtttgtccaaa 27458484  T
Q  399 ttcattgctctcaaaactagagctcata 426  Q
    ||||||||||| ||||||||||||||||    
T  27458483 ttcattgctcttaaaactagagctcata 27458456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 290 - 426
Target Start/End: Complemental strand, 6568179 - 6568043
Alignment:
Q  290 acaaatttgttctttaattcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggt 389  Q
    ||||||| || |||||| ||||||||||||| || || ||  ||| |||||||||||||||| ||||| ||||||||| ||||||||||||||||||| |    
T  6568179 acaaattggtactttaagtcataaaatattttcaacaatactctattttcatcaaactcaattaaaaattgtttatgtagatgtttaatgttaagttgat 6568080  T
Q  390 ttgtccaaattcattgctctcaaaactagagctcata 426  Q
      ||||||||||||||||  ||||||||||| |||||    
T  6568079 gggtccaaattcattgcttgcaaaactagagttcata 6568043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 302 - 419
Target Start/End: Complemental strand, 20710854 - 20710737
Alignment:
Q  302 tttaattcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattc 401  Q
    ||||| ||||||||||||| ||||||||||||  |||||||||||||||| ||||| | ||||||| | ||| ||||| |||||||||| ||||||||||    
T  20710854 tttaagtcataaaatattttcaccattatcctcttttcatcaaactcaattaaaaaatatttatgtagctgtctaatgctaagttggttggtccaaattc 20710755  T
Q  402 attgctctcaaaactaga 419  Q
    | || ||||||| |||||    
T  20710754 actgttctcaaagctaga 20710737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 302 - 418
Target Start/End: Complemental strand, 15939440 - 15939324
Alignment:
Q  302 tttaattcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattc 401  Q
    ||||| ||||||||||| |||||||||||| || ||||||||||| || | |||||||||  ||||||| ||||||| |||||||||| |||||||| ||    
T  15939440 tttaaatcataaaatatctgcaccattatcatattttcatcaaacccagttaaaaagtgtgcatgtggacgtttaatcttaagttggtatgtccaaactc 15939341  T
Q  402 attgctctcaaaactag 418  Q
    || |||||||| |||||    
T  15939340 atcgctctcaacactag 15939324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 302 - 397
Target Start/End: Complemental strand, 15947804 - 15947709
Alignment:
Q  302 tttaattcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaa 397  Q
    ||||| ||||||||||| |||||||||||| || ||||||||||| || | |||||||||  |||||||  |||||| |||||||||  |||||||    
T  15947804 tttaagtcataaaatatctgcaccattatcatattttcatcaaacccagttaaaaagtgtgcatgtggacatttaatcttaagttggcatgtccaa 15947709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 302 - 397
Target Start/End: Complemental strand, 28292591 - 28292496
Alignment:
Q  302 tttaattcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaa 397  Q
    ||||| ||||||||||| |||||||||||| || ||||||||||| || | |||||||||  |||||||  |||||| |||||||||  |||||||    
T  28292591 tttaagtcataaaatatctgcaccattatcatattttcatcaaacccagttaaaaagtgtgcatgtggacatttaatcttaagttggcatgtccaa 28292496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 286 - 399
Target Start/End: Complemental strand, 26801558 - 26801445
Alignment:
Q  286 agttacaaatttgttctttaattcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagt 385  Q
    ||||| ||||| ||| | ||| |||||||||||||||| |||||||||| |||||||||  | | | ||||| ||||||| || ||  ||||||||||||    
T  26801558 agttataaattggttatctaagtcataaaatatttgcatcattatcctattttcatcaagtttagttaaaaaatgtttatatgaataattaatgttaagt 26801459  T
Q  386 tggtttgtccaaat 399  Q
    |||| | |||||||    
T  26801458 tggtatatccaaat 26801445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 322 - 386
Target Start/End: Original strand, 42241860 - 42241924
Alignment:
Q  322 caccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagtt 386  Q
    |||| ||||| || ||| |||||||| | | |||||||||||||||||| |||||||||||||||    
T  42241860 caccgttatcttatttttatcaaacttagttaaaaagtgtttatgtggacgtttaatgttaagtt 42241924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 387
Target Start/End: Original strand, 46798195 - 46798246
Alignment:
Q  336 tttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttg 387  Q
    ||||||||||| || | ||||||||||||||| |||||||||| ||||||||    
T  46798195 tttcatcaaacacagttaaaaagtgtttatgtagatgtttaatattaagttg 46798246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 1e-51; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 286 - 425
Target Start/End: Original strand, 5187739 - 5187878
Alignment:
Q  286 agttacaaatttgttctttaattcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagt 385  Q
    ||||||||||| || |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5187739 agttacaaattggtcctttaaatcataaaatatttgcaccattattctaatttcatcaaactcaatcaaaaagtgtttatgtgaatgtttaatgttaagt 5187838  T
Q  386 tggtttgtccaaattcattgctctcaaaactagagctcat 425  Q
    ||||| |||||||||||||  | |||||||||||||||||    
T  5187839 tggttggtccaaattcattattttcaaaactagagctcat 5187878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 287 - 426
Target Start/End: Original strand, 9298600 - 9298738
Alignment:
Q  287 gttacaaatttgttctttaattcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagtt 386  Q
    |||||||||| || |||||| ||||||||||||||||| |||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||    
T  9298600 gttacaaattggt-ctttaagtcataaaatatttgcactattatcctaatttcatcaaattcagtcaaaaagtatttatgtggatgtttaatgttaagtt 9298698  T
Q  387 ggtttgtccaaattcattgctctcaaaactagagctcata 426  Q
     || |||||||||||||||||||  |||||||||||||||    
T  9298699 tgtctgtccaaattcattgctctataaactagagctcata 9298738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 287 - 427
Target Start/End: Original strand, 21436885 - 21437025
Alignment:
Q  287 gttacaaatttgttctttaattcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagtt 386  Q
    |||||||||| || |||||| |||||||||| ||||||| ||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||    
T  21436885 gttacaaattggtcctttaagtcataaaataattgcaccgttatcctaatttcatcaaactaagtcaaaaagtgtttgtgtggatgtttaatgttaagtt 21436984  T
Q  387 ggtttgtccaaattcattgctctcaaaactagagctcataa 427  Q
    | |||||||||||||| |||| |||||||||| | ||||||    
T  21436985 gatttgtccaaattcactgctgtcaaaactagtgatcataa 21437025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 287 - 426
Target Start/End: Complemental strand, 10221854 - 10221710
Alignment:
Q  287 gttacaaatttgt-tctttaattcataaaatatttgcaccattatcctaatttcatcaaactca----atcaaaaagtgtttatgtggatgtttaatgtt 381  Q
    ||||||||||||| | ||||| ||||||||||||||||| |||||||||||||||||||||  |    || |||| ||||||||||||||||||||||||    
T  10221854 gttacaaatttgtctttttaagtcataaaatatttgcacgattatcctaatttcatcaaacatacataattaaaaggtgtttatgtggatgtttaatgtt 10221755  T
Q  382 aagttggtttgtccaaattcattgctctcaaaactagagctcata 426  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  10221754 aagttggtttgtccaaattcattgctctcaaaactatagctcata 10221710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 242 - 417
Target Start/End: Original strand, 18704505 - 18704680
Alignment:
Q  242 ctttaagttacatgattataactagttagttatttaannnnnnnagttacaaatttgttctttaattcataaaatatttgcaccattatcctaatttcat 341  Q
    |||||||||| ||| ||||||| ||||||| ||||||        |||||||||| ||  ||||| ||||||||||||| ||||||||||| ||||||||    
T  18704505 ctttaagttagatggttataacaagttagtcatttaagcttttttgttacaaattggtcatttaagtcataaaatattttcaccattatcccaatttcat 18704604  T
Q  342 caaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattcattgctctcaaaacta 417  Q
    |||||||  ||||||||||| | |||||||| |||||||||||||| ||||||| ||||||| |||||||||||||    
T  18704605 caaactcggtcaaaaagtgtatgtgtggatgcttaatgttaagttgatttgtcctaattcatcgctctcaaaacta 18704680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 287 - 402
Target Start/End: Original strand, 1130598 - 1130712
Alignment:
Q  287 gttacaaatttgttctttaattcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagtt 386  Q
    |||||||||| ||  ||||| ||||||||||| |||| |||||||||| ||| |||||||||| | |||||||||||||||||| ||||||||||| |||    
T  1130598 gttacaaattggtcttttaagtcataaaatatctgcatcattatcctattttaatcaaactcagttaaaaagtgtttatgtgga-gtttaatgttaggtt 1130696  T
Q  387 ggtttgtccaaattca 402  Q
    |||  ||| |||||||    
T  1130697 ggtaggtctaaattca 1130712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 302 - 389
Target Start/End: Original strand, 931122 - 931209
Alignment:
Q  302 tttaattcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggt 389  Q
    ||||| ||||||||||| |||| ||||||| || |||||||||||| | | |||| ||||||||||||  ||||||||||||||||||    
T  931122 tttaagtcataaaatatatgcatcattatcatactttcatcaaacttagttaaaaggtgtttatgtggccgtttaatgttaagttggt 931209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 308 - 389
Target Start/End: Original strand, 21508797 - 21508878
Alignment:
Q  308 tcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggt 389  Q
    |||||||| || ||||| ||||||||| ||||||||||  || | ||||||||||||||||||  |||||||||||||||||    
T  21508797 tcataaaacatatgcactattatcctattttcatcaaatgcagtaaaaaagtgtttatgtggacatttaatgttaagttggt 21508878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 320 - 419
Target Start/End: Complemental strand, 17200882 - 17200783
Alignment:
Q  320 tgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattcattgctctcaaaactaga 419  Q
    |||||||| |||||| |||| ||||||| ||| ||||| |||||| || || ||| |||||||||||||| |   ||||||||| |||||||||||||||    
T  17200882 tgcaccataatcctattttcctcaaacttaattaaaaaatgtttacgtagacgttgaatgttaagttggtatacacaaattcatcgctctcaaaactaga 17200783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 301 - 402
Target Start/End: Original strand, 35716401 - 35716502
Alignment:
Q  301 ctttaattcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaatt 400  Q
    |||||| || ||| |||||| |||||||| |||  |||| ||||||||| | |||||||| ||||||||| ||| |||| |||||||||  |||||||||    
T  35716401 ctttaagtcgtaacatattttcaccattaccctcttttcgtcaaactcagttaaaaagtgcttatgtggacgttgaatgctaagttggtgggtccaaatt 35716500  T
Q  401 ca 402  Q
    ||    
T  35716501 ca 35716502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 312 - 400
Target Start/End: Complemental strand, 41959947 - 41959855
Alignment:
Q  312 aaaatatttgcaccattatcctaatttcatcaaactc----aatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaatt 400  Q
    |||||||||||||||| |||||| ||| |||||||||    ||| ||||||||||  ||| |||||||||||||||||| || |||| |||||    
T  41959947 aaaatatttgcaccatgatcctatttttatcaaactcaattaattaaaaagtgttcgtgtagatgtttaatgttaagttagtatgtcgaaatt 41959855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 418
Target Start/End: Complemental strand, 33721469 - 33721359
Alignment:
Q  308 tcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattcattgct 407  Q
    ||||||||||||| | || ||| |||  ||| |||||| ||||| ||||| ||||||| ||   ||||||||||||||| ||  || ||||||||||| |    
T  33721469 tcataaaatattttcgccgttaccctccttttatcaaattcaattaaaaaatgtttatatgagcgtttaatgttaagttagtcggttcaaattcattgat 33721370  T
Q  408 ctcaaaactag 418  Q
    |||||||||||    
T  33721369 ctcaaaactag 33721359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 353 - 417
Target Start/End: Original strand, 9158622 - 9158686
Alignment:
Q  353 aaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattcattgctctcaaaacta 417  Q
    ||||||||||||| |||| |||| ||||||||||||| |||||||| |||   ||||||||||||    
T  9158622 aaaaagtgtttatttggaagtttgatgttaagttggtatgtccaaactcaccactctcaaaacta 9158686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 402
Target Start/End: Complemental strand, 11862539 - 11862438
Alignment:
Q  301 ctttaattcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaatt 400  Q
    |||||| |||||||| || |||||| ||| |||  ||  |||||||||| | ||||| |||||||||||| ||||| || || ||||||  |||||||||    
T  11862539 ctttaagtcataaaaaatgtgcaccgttaccctctttcaatcaaactcatttaaaaaatgtttatgtggacgtttagtgctatgttggtaggtccaaatt 11862440  T
Q  401 ca 402  Q
    ||    
T  11862439 ca 11862438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 429
Target Start/End: Complemental strand, 16216617 - 16216528
Alignment:
Q  340 atcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattcattgctctcaaaactagagctcataagt 429  Q
    |||||||||||| ||||||||||||||  || ||||| |  |||||||||  || |||||| || |||||||||| ||||  ||||||||    
T  16216617 atcaaactcaattaaaaagtgtttatgaagaagtttattactaagttggtaagttcaaatttatcgctctcaaaagtagaattcataagt 16216528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 7e-50; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 302 - 426
Target Start/End: Complemental strand, 29408158 - 29408034
Alignment:
Q  302 tttaattcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattc 401  Q
    ||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  29408158 tttaagtcataaaatatttgcactattattctaatttcatcaaactcaatcaaaaagtgtttatatggatgtttaatgttaagttggtttgtccaaattc 29408059  T
Q  402 attgctctcaaaactagagctcata 426  Q
    |||| |||||||||||||| |||||    
T  29408058 attgttctcaaaactagagttcata 29408034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 287 - 426
Target Start/End: Original strand, 47084740 - 47084878
Alignment:
Q  287 gttacaaatttgttctttaattcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatg-ttaagt 385  Q
    |||||||||| || |||||| |||  |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||    
T  47084740 gttacaaattggtcctttaagtca--aaatatttgcaccattatcctaatttcaacaaacttaatcaaaaagtgtttatgtggatgtttaatgtttaagt 47084837  T
Q  386 tggtttgtccaaattcattgctctcaaaactagagctcata 426  Q
    ||||||||| |||||||||| | ||||| |||||| |||||    
T  47084838 tggtttgtcaaaattcattgatgtcaaatctagagttcata 47084878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 302 - 418
Target Start/End: Complemental strand, 34596231 - 34596115
Alignment:
Q  302 tttaattcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattc 401  Q
    ||||| ||||||||||||||||| ||||||||| ||||||| |||| | ||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  34596231 tttaagtcataaaatatttgcactattatcctagtttcatcgaactaagtcaaaaagtgtttgtgtggatgtttaatgttaagttgatttgtccaaattc 34596132  T
Q  402 attgctctcaaaactag 418  Q
    | |||||||||||||||    
T  34596131 actgctctcaaaactag 34596115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 315 - 391
Target Start/End: Original strand, 39983558 - 39983634
Alignment:
Q  315 atatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggttt 391  Q
    |||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  39983558 atatatgcaccattatcctaatttcatcagattcaatcaaaaagtgtttatgtggatgtttaatgttaagttggttt 39983634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 301 - 387
Target Start/End: Original strand, 30053684 - 30053770
Alignment:
Q  301 ctttaattcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttg 387  Q
    |||||| ||||||||||| |||||||||||  || || ||||||||||||| |||||||| |||||||||||| || || |||||||    
T  30053684 ctttaagtcataaaatatatgcaccattattatatttccatcaaactcaattaaaaagtgcttatgtggatgtgtattgctaagttg 30053770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 302 - 426
Target Start/End: Complemental strand, 32297449 - 32297326
Alignment:
Q  302 tttaattcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattc 401  Q
    ||||| |||||||| || |||| ||| ||| || ||| |||||| || || ||||||||||||||||||  |||||| |||||||||| ||||| |||||    
T  32297449 tttaagtcataaaacatgtgcatcatcatcatatttttatcaaattcgattaaaaagtgtttatgtggagatttaat-ttaagttggtatgtccgaattc 32297351  T
Q  402 attgctctcaaaactagagctcata 426  Q
    |  | |||||||||||||| |||||    
T  32297350 accgttctcaaaactagagttcata 32297326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 402
Target Start/End: Complemental strand, 32450494 - 32450394
Alignment:
Q  302 tttaattcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattc 401  Q
    ||||| ||| ||||||  |||| ||||||| || |||||||||||||  | |||| || ||||||| || |||||||||||||||| ||||| |||||||    
T  32450494 tttaagtcagaaaatacatgcatcattatcttattttcatcaaactcggttaaaaggtatttatgtagacgtttaatgttaagttgatttgttcaaattc 32450395  T
Q  402 a 402  Q
    |    
T  32450394 a 32450394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 383
Target Start/End: Original strand, 19048529 - 19048576
Alignment:
Q  336 tttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaa 383  Q
    |||||||||||||||| ||||||||||||||| || ||||||||||||    
T  19048529 tttcatcaaactcaattaaaaagtgtttatgtcgacgtttaatgttaa 19048576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 302 - 389
Target Start/End: Original strand, 37204710 - 37204797
Alignment:
Q  302 tttaattcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggt 389  Q
    ||||| ||||||||||||| |||||||| |||   |||| ||||||||   ||||| |||||||||||| |||||||||||| |||||    
T  37204710 tttaagtcataaaatattttcaccattaccctcccttcaacaaactcagataaaaaatgtttatgtggaagtttaatgttaaattggt 37204797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 389
Target Start/End: Original strand, 3839142 - 3839211
Alignment:
Q  320 tgcaccattatcctaatttcatcaaactcaatcaaaaagtgttt-atgtggatgtttaatgttaagttggt 389  Q
    ||||| ||||||||| |||||| ||||||| | |||| |||||| ||||||| ||||||||||||||||||    
T  3839142 tgcactattatcctattttcattaaactcatt-aaaaggtgttttatgtggaggtttaatgttaagttggt 3839211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 389
Target Start/End: Original strand, 32438047 - 32438083
Alignment:
Q  353 aaaaagtgtttatgtggatgtttaatgttaagttggt 389  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  32438047 aaaaggtgtttatgtgcatgtttaatgttaagttggt 32438083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 7e-50; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 310 - 426
Target Start/End: Original strand, 5750598 - 5750714
Alignment:
Q  310 ataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattcattgctct 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||    
T  5750598 ataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttgtatggatgtttaatgttaagttggtttgtccaaattaattgctct 5750697  T
Q  410 caaaactagagctcata 426  Q
    |||||||| ||||||||    
T  5750698 caaaactaaagctcata 5750714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 310 - 426
Target Start/End: Original strand, 56094137 - 56094255
Alignment:
Q  310 ataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaag--tgtttatgtggatgtttaatgttaagttggtttgtccaaattcattgct 407  Q
    |||||||| ||||||||||||||||||||||||||||| | |||||||   ||||| ||||||||||||||||||||||| |||||||||||||| ||||    
T  56094137 ataaaataattgcaccattatcctaatttcatcaaactaagtcaaaaaaaatgtttgtgtggatgtttaatgttaagttgatttgtccaaattcactgct 56094236  T
Q  408 ctcaaaactagagctcata 426  Q
    ||||||||||| |||||||    
T  56094237 ctcaaaactagtgctcata 56094255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 302 - 427
Target Start/End: Complemental strand, 867812 - 867683
Alignment:
Q  302 tttaattcataaaatatttgcaccatta----tcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaa 397  Q
    ||||| |||||||||||||||| |||||    |||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||| ||||||||||    
T  867812 tttaagtcataaaatatttgcatcattaattgtcctaatttcatcaaacttaatcaaaaagtgtttacgtggatgtttactgttaagttagtttgtccaa 867713  T
Q  398 attcattgctctcaaaactagagctcataa 427  Q
    |||||||  | |||||| ||||||||||||    
T  867712 attcatttatatcaaaagtagagctcataa 867683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 288 - 383
Target Start/End: Original strand, 48546755 - 48546850
Alignment:
Q  288 ttacaaatttgttctttaattcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaa 383  Q
    |||||||||  | |||||| ||||||||||||||||||||||||||| |||||||||||| | | |||||||||||||||||| |||| |||||||    
T  48546755 ttacaaattgatcctttaaatcataaaatatttgcaccattatcctattttcatcaaacttagttaaaaagtgtttatgtggacgtttgatgttaa 48546850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 290 - 417
Target Start/End: Complemental strand, 23480769 - 23480643
Alignment:
Q  290 acaaatttgttctttaattcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggt 389  Q
    ||||||| || |||||||| ||||||||||| | |||||| |||  |||| |||||||   | ||||||||||||||| |||||||||||||||||||||    
T  23480769 acaaattggtcctttaatttataaaatattttcgccattaccctc-tttcttcaaacttggttaaaaagtgtttatgttgatgtttaatgttaagttggt 23480671  T
Q  390 ttgtccaaattcattgctctcaaaacta 417  Q
      || |||||||| ||||||||||||||    
T  23480670 gggttcaaattcactgctctcaaaacta 23480643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 302 - 414
Target Start/End: Complemental strand, 24195185 - 24195073
Alignment:
Q  302 tttaattcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattc 401  Q
    ||||| |||||||||||  ||||||||||  || |||| ||||||||| | |||||||||||||||| | |||| ||||||||||||| ||||||| |||    
T  24195185 tttaagtcataaaatatcggcaccattattatattttcttcaaactcagttaaaaagtgtttatgtgaacgtttgatgttaagttggtatgtccaatttc 24195086  T
Q  402 attgctctcaaaa 414  Q
    ||  |||||||||    
T  24195085 atcactctcaaaa 24195073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 417
Target Start/End: Original strand, 3161389 - 3161505
Alignment:
Q  302 tttaattcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaag-tgtttatgtggatgtttaatgttaagttggtttgtccaaatt 400  Q
    ||||| |||||||||| |||||| ||||||||| ||||||| |||  ||| |||||  | |||||||||| ||||||||||||||| ||  ||| |||||    
T  3161389 tttaagtcataaaatacttgcacaattatcctattttcatctaacctaattaaaaaaatatttatgtggacgtttaatgttaagtttgtgggtctaaatt 3161488  T
Q  401 cattgctctcaaaacta 417  Q
    ||   ||||||||||||    
T  3161489 caccactctcaaaacta 3161505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 402
Target Start/End: Original strand, 26644827 - 26644901
Alignment:
Q  328 tatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattca 402  Q
    ||||||| |||||||||||| | | ||||||||||||| ||||  || |||||||| ||||| ||||||||||||    
T  26644827 tatcctattttcatcaaacttagttaaaaagtgtttatttggacattcaatgttaaattggtatgtccaaattca 26644901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 287 - 427
Target Start/End: Complemental strand, 35293190 - 35293053
Alignment:
Q  287 gttacaaatttgttctttaattcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagtt 386  Q
    ||||||||||  | |||||| ||| || |||| ||||||| ||| ||| |||||| ||||||| | |||||   | ||| || | |||||||||||||||    
T  35293190 gttacaaattactcctttaagtcagaatatatctgcaccaatattctattttcattaaactcagttaaaaa---tgtatatgaacgtttaatgttaagtt 35293094  T
Q  387 ggtttgtccaaattcattgctctcaaaactagagctcataa 427  Q
    ||| |||| |||||||| |||||||||| ||| | ||||||    
T  35293093 ggtatgtctaaattcatcgctctcaaaattagggttcataa 35293053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 340 - 417
Target Start/End: Complemental strand, 22097384 - 22097307
Alignment:
Q  340 atcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattcattgctctcaaaacta 417  Q
    ||||||||||||||||||| |||| ||||||   ||||| ||||||  || |||||||||| ||| ||||||||||||    
T  22097384 atcaaactcaatcaaaaagcgtttgtgtggaaacttaattttaagtcagtatgtccaaatttattcctctcaaaacta 22097307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 302 - 363
Target Start/End: Original strand, 24273919 - 24273980
Alignment:
Q  302 tttaattcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgttt 363  Q
    ||||| ||||||||||| |||| |||||||||| |||||||||||||   ||||||||||||    
T  24273919 tttaagtcataaaatatctgcatcattatcctattttcatcaaactcgcgcaaaaagtgttt 24273980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 373 - 417
Target Start/End: Complemental strand, 2819068 - 2819024
Alignment:
Q  373 tttaatgttaagttggtttgtccaaattcattgctctcaaaacta 417  Q
    ||||||| |||||||||| ||| ||||||||||||||||||||||    
T  2819068 tttaatgctaagttggttggtcgaaattcattgctctcaaaacta 2819024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 353 - 389
Target Start/End: Complemental strand, 26003959 - 26003923
Alignment:
Q  353 aaaaagtgtttatgtggatgtttaatgttaagttggt 389  Q
    |||||||||||||||||| ||||||||||||||||||    
T  26003959 aaaaagtgtttatgtggaagtttaatgttaagttggt 26003923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 418
Target Start/End: Original strand, 56361138 - 56361254
Alignment:
Q  302 tttaattcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattc 401  Q
    ||||| |||||||||||||  |  |||||| || ||| || ||||||||| ||||||| ||||  | ||  |||||||||||||| || |||||| ||||    
T  56361138 tttaagtcataaaatattttaataattatcatatttttattaaactcaattaaaaagtatttacatagacatttaatgttaagttagtatgtccacattc 56361237  T
Q  402 attgctctcaaaactag 418  Q
    ||  |||||||||||||    
T  56361238 atctctctcaaaactag 56361254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 414
Target Start/End: Complemental strand, 51983621 - 51983546
Alignment:
Q  340 atcaaactcaatcaaaaagtgtttatgtggatgtttaa-tgttaagttggtttgtccaaattcattgctctcaaaa 414  Q
    |||||||||||| ||||| ||||||||| ||| ||||| |||||||||||| ||| |||||| | || ||||||||    
T  51983621 atcaaactcaattaaaaaatgtttatgtagatatttaattgttaagttggtatgttcaaattaactgttctcaaaa 51983546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 402
Target Start/End: Complemental strand, 7556136 - 7556087
Alignment:
Q  353 aaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattca 402  Q
    |||| ||||||||||  |||||||||||||||||||| ||| ||||||||    
T  7556136 aaaatgtgtttatgtaaatgtttaatgttaagttggtatgttcaaattca 7556087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 400
Target Start/End: Original strand, 47808865 - 47808926
Alignment:
Q  339 catcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaatt 400  Q
    ||||||||||  | |||||||| ||||||||||||||| || |||||||||  |||||||||    
T  47808865 catcaaactcggttaaaaagtgcttatgtggatgtttattgctaagttggtaggtccaaatt 47808926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 417
Target Start/End: Complemental strand, 18521539 - 18521428
Alignment:
Q  308 tcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgttta--atgttaagttggtttgtccaaattcattg 405  Q
    ||||||||||| ||||||| |||| || |||||| |||||||| | |||||| |||| ||||  |||||  |||||||||||   ||||| | ||||  |    
T  18521539 tcataaaatatatgcaccactatcttattttcattaaactcaaccgaaaagtctttaggtgggcgtttaatatgttaagttgacatgtcctagttcaggg 18521440  T
Q  406 ctctcaaaacta 417  Q
    ||||||||||||    
T  18521439 ctctcaaaacta 18521428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 4e-45; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 302 - 426
Target Start/End: Original strand, 16600328 - 16600452
Alignment:
Q  302 tttaattcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattc 401  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||  ||||||||| |||    
T  16600328 tttaagtcataaaatatttgcaccattatcctaatttaatcaaactaagtcaaaaagtgtttatgtggatgtttaatgttaagtttatttgtccaagttc 16600427  T
Q  402 attgctctcaaaactagagctcata 426  Q
    ||||||||||||||||| |||||||    
T  16600428 attgctctcaaaactagtgctcata 16600452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 309 - 426
Target Start/End: Complemental strand, 33401801 - 33401684
Alignment:
Q  309 cataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattcattgctc 408  Q
    |||||||||||||||| ||||||||| |||||| ||| || |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  33401801 cataaaatatttgcactattatcctagtttcattaaattcgatcaaaaagtgtttatgtggatgtttaatgttaacttggtttgtccaaattaattgctc 33401702  T
Q  409 tcaaaactagagctcata 426  Q
    |||||||||||| |||||    
T  33401701 tcaaaactagaggtcata 33401684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 302 - 426
Target Start/End: Complemental strand, 5474225 - 5474101
Alignment:
Q  302 tttaattcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattc 401  Q
    ||||||||||||||||| |||| ||| |||||| |||||||||||| | | |||||||||||||||| |  ||||||||||  ||||| ||| ||||| |    
T  5474225 tttaattcataaaatatatgcatcatcatcctattttcatcaaacttagttaaaaagtgtttatgtgcacatttaatgttagattggtatgttcaaatcc 5474126  T
Q  402 attgctctcaaaactagagctcata 426  Q
    |  ||||||||||| |||| |||||    
T  5474125 accgctctcaaaaccagagttcata 5474101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 336 - 429
Target Start/End: Complemental strand, 17053804 - 17053711
Alignment:
Q  336 tttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattcattgctctcaaaactagagctcataagt 429  Q
    |||||||||||||||| ||||||||||||||  || ||||| |  |||||||||  || |||||| ||||||||||||||||||  ||||||||    
T  17053804 tttcatcaaactcaattaaaaagtgtttatgaagacgtttattactaagttggtaagttcaaatttattgctctcaaaactagaattcataagt 17053711  T

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Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 292 - 396
Target Start/End: Original strand, 932483 - 932587
Alignment:
Q  292 aaatttgttctttaattcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggttt 391  Q
    ||||| || |||||| |||||||||||||| | ||||||| |  ||||||||||||| || ||||| |||||||||||  |||||||||||| || || |    
T  932483 aaattggtcctttaaatcataaaatatttgaatcattatcttgttttcatcaaactcgattaaaaattgtttatgtgggcgtttaatgttaaatttgtat 932582  T
Q  392 gtcca 396  Q
    |||||    
T  932583 gtcca 932587  T

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Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 308 - 418
Target Start/End: Complemental strand, 27499541 - 27499432
Alignment:
Q  308 tcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattcattgct 407  Q
    ||||||||||||| ||||| |||| || |||||||||||||||| ||||| | ||||| | ||  ||||||||||||||| | |||| ||||| ||  ||    
T  27499541 tcataaaatatttacaccactatcttattttcatcaaactcaattaaaaaatatttat-ttgaactttaatgttaagttgctatgtctaaattaatcact 27499443  T
Q  408 ctcaaaactag 418  Q
    |||||||||||    
T  27499442 ctcaaaactag 27499432  T

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Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 417
Target Start/End: Complemental strand, 12920629 - 12920521
Alignment:
Q  309 cataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattcattgctc 408  Q
    |||||||||| |||| |||||||||  ||  |||||||||| | ||||| |||||||||||||||||| || |||||| ||   |||||||||| | |||    
T  12920629 cataaaatatatgcatcattatcctctttctatcaaactcagttaaaaattgtttatgtggatgtttattgctaagttagtagttccaaattcacttctc 12920530  T
Q  409 tcaaaacta 417  Q
     ||||||||    
T  12920529 ccaaaacta 12920521  T

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Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 340 - 389
Target Start/End: Original strand, 278964 - 279013
Alignment:
Q  340 atcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggt 389  Q
    ||||||||| || |||||||||||||||||||||| | ||||||||||||    
T  278964 atcaaactcgattaaaaagtgtttatgtggatgttaattgttaagttggt 279013  T

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Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 402
Target Start/End: Original strand, 34366922 - 34367023
Alignment:
Q  301 ctttaattcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaatt 400  Q
    |||||| ||||||||||| ||| |||||  |||  || ||||||||| | | |||||||| ||||||||| ||||| |||||||||||  |||| |||||    
T  34366922 ctttaagtcataaaatatatgcgccatttccctttttccatcaaacttagttaaaaagtgcttatgtggacgtttattgttaagttggcatgtctaaatt 34367021  T
Q  401 ca 402  Q
    ||    
T  34367022 ca 34367023  T

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Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 387
Target Start/End: Original strand, 8822263 - 8822342
Alignment:
Q  308 tcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttg 387  Q
    |||||||||||||||| |||||| ||  |||||| |||||| || |||||||||| || |||  |||||||| |||||||    
T  8822263 tcataaaatatttgcatcattattctcttttcattaaactctattaaaaagtgttcatatggtcgtttaatgctaagttg 8822342  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 413
Target Start/End: Original strand, 5552412 - 5552472
Alignment:
Q  353 aaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattcattgctctcaaa 413  Q
    ||||||| |||||||||| ||||||||||||||| ||  || |||||||| | ||||||||    
T  5552412 aaaaagtatttatgtggacgtttaatgttaagttagtgagttcaaattcactactctcaaa 5552472  T

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Target: scaffold0001 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 308 - 414
Target Start/End: Complemental strand, 508394 - 508288
Alignment:
Q  308 tcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattcattgct 407  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  508394 tcatagaatatttgcaccattatcctaatttcatcaaactcaatcaaaatgtgtttatgtggatgtttaatgttaagttgatttatccaaattcattgct 508295  T
Q  408 ctcaaaa 414  Q
    |||||||    
T  508294 ctcaaaa 508288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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