View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8515_low_3 (Length: 390)
Name: NF8515_low_3
Description: NF8515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8515_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 2 - 384
Target Start/End: Complemental strand, 35072008 - 35071611
Alignment:
| Q |
2 |
tcagcgtgttgagcgtagtagtggtaaattcatgaggagttttactcttccagctaactgtaaattggatcaggttaaggcttctattgaagatggtgtt |
101 |
Q |
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| T |
35072008 |
tcagcgtgttgagcgtagtagtggtaaattcatgaggagttttactcttccagctaactgtaaattggatcaggttaaggcttctattgaagatggtgtt |
35071909 |
T |
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| Q |
102 |
cttactgttactgtccctaaggaagaggttaccaaccctgatcgtttgaccaatcagagttcacagtgagagtaattatgaaaagtt------------- |
188 |
Q |
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| T |
35071908 |
cttactgttactgtccctaaggaagaggttaccaaccctgatcgtttgaccaatcagagttcacagtgagagtaataatgaacagttctgttcgtgtgga |
35071809 |
T |
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| Q |
189 |
--gaaatttgaatccaaaaatgttccattttggctatttgtttttgtatgttagtgattaggaaatgctgttacaaataagaaacgtgtgtgtatcataa |
286 |
Q |
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| T |
35071808 |
ttgaaatttgaatccaaaaatgttccattttggctatttgtttttgtatgttagtgattaggaaatgctgttacaaataagaaacgtgtgtgtatcataa |
35071709 |
T |
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| Q |
287 |
gcattaatacgggttagataaagcacctacgtgttgatgtccaccacacatgtgattctacggaattatgttatttttcaattattattgatgtccat |
384 |
Q |
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| T |
35071708 |
gcattaatacgagttagataaagcacctacgtgttgatgtccaccacacatgtgattctacggaattatgttatttttcaattattattaatgtccat |
35071611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 127
Target Start/End: Original strand, 34919170 - 34919235
Alignment:
| Q |
62 |
taaattggatcaggttaaggcttctattgaagatggtgttcttactgttactgtccctaaggaaga |
127 |
Q |
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| T |
34919170 |
taaaatggatcaggttaaagctggtatggagaatggggttcttactgttactgttcctaaggaaga |
34919235 |
T |
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