View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8516_high_10 (Length: 349)

Name: NF8516_high_10
Description: NF8516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8516_high_10
NF8516_high_10
[»] chr2 (7 HSPs)
chr2 (22-183)||(45082547-45082708)
chr2 (185-333)||(30266314-30266468)
chr2 (185-287)||(25616843-25616945)
chr2 (220-289)||(42847959-42848028)
chr2 (114-183)||(45040589-45040658)
chr2 (230-289)||(45632374-45632433)
chr2 (223-289)||(42848608-42848674)
[»] chr1 (4 HSPs)
chr1 (185-334)||(23732837-23732995)
chr1 (230-289)||(19534730-19534789)
chr1 (185-237)||(14237386-14237438)
chr1 (230-266)||(51097551-51097587)
[»] chr8 (6 HSPs)
chr8 (215-283)||(44495085-44495153)
chr8 (96-183)||(29378191-29378278)
chr8 (185-237)||(9044179-9044231)
chr8 (185-237)||(16723676-16723728)
chr8 (185-237)||(23546138-23546190)
chr8 (185-237)||(23546909-23546961)
[»] chr5 (6 HSPs)
chr5 (202-289)||(4427880-4427967)
chr5 (219-289)||(33573280-33573350)
chr5 (185-237)||(14098489-14098541)
chr5 (220-289)||(14098379-14098448)
chr5 (220-289)||(41609534-41609603)
chr5 (220-289)||(210403-210472)
[»] chr4 (8 HSPs)
chr4 (197-286)||(5941337-5941426)
chr4 (219-289)||(50185305-50185375)
chr4 (220-289)||(49648187-49648256)
chr4 (185-237)||(43428469-43428521)
chr4 (220-289)||(24844112-24844181)
chr4 (230-266)||(11380967-11381003)
chr4 (185-237)||(19638096-19638148)
chr4 (221-289)||(51702695-51702763)
[»] chr3 (10 HSPs)
chr3 (220-289)||(46889353-46889422)
chr3 (185-289)||(20111854-20111958)
chr3 (230-289)||(1093209-1093268)
chr3 (220-289)||(37915435-37915504)
chr3 (220-289)||(49308157-49308226)
chr3 (220-289)||(53467242-53467311)
chr3 (230-285)||(50704311-50704366)
chr3 (230-267)||(36863922-36863959)
chr3 (185-237)||(11617409-11617461)
chr3 (185-237)||(40934833-40934885)
[»] chr7 (9 HSPs)
chr7 (230-289)||(42745671-42745730)
chr7 (219-289)||(42418172-42418242)
chr7 (220-289)||(9146091-9146160)
chr7 (216-289)||(12294226-12294299)
chr7 (220-289)||(32577325-32577394)
chr7 (185-237)||(43448522-43448574)
chr7 (230-267)||(31077732-31077769)
chr7 (217-289)||(12293490-12293562)
chr7 (185-237)||(19068458-19068510)
[»] chr6 (2 HSPs)
chr6 (192-289)||(18970606-18970703)
chr6 (185-237)||(20508604-20508656)
[»] scaffold1370 (1 HSPs)
scaffold1370 (185-243)||(195-253)
[»] scaffold0136 (1 HSPs)
scaffold0136 (220-282)||(23689-23751)
[»] scaffold0159 (1 HSPs)
scaffold0159 (185-237)||(28147-28199)


Alignment Details
Target: chr2 (Bit Score: 122; Significance: 2e-62; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 22 - 183
Target Start/End: Original strand, 45082547 - 45082708
Alignment:
Q  22 tgattagcaatgactttaatcgaaacttctcaaatcccaggtagtaatttacttgccttaagcacactttattgttgcacatcatcacatgtctgcaacg 121  Q
    |||||||||||| |||||||||||||||||||||||||| ||| ||| ||||| ||||||||||||||| | ||||||||||||||||||| ||||||||    
T  45082547 tgattagcaatggctttaatcgaaacttctcaaatcccaagtactaaattactggccttaagcacacttcactgttgcacatcatcacatgcctgcaacg 45082646  T
Q  122 tagccactactcttagttttttcactagatccttcacgatcaacttgtatttatcacccatc 183  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  45082647 tagccactactcttagttttttcactagatcctccacggtcaacttgtatttatcacccatc 45082708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 185 - 333
Target Start/End: Original strand, 30266314 - 30266468
Alignment:
Q  185 tatatatagggcattttaaatgaaagcaccttttaaatgagagtgtgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgc 284  Q
    |||||||||||||||| |||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  30266314 tatatatagggcatttcaaatgagagcactttttaaatgagagggtgagaggaattaatttagaccgttggatctaaatcaacacttcagatttaattgc 30266413  T
Q  285 tcttt------tgtcatgcaatgtaacatccaccttttctcttctccactctctt 333  Q
    |||||       |||||| | ||||||||||||||||||||||||||||||||||    
T  30266414 tctttaaaaagggtcatggactgtaacatccaccttttctcttctccactctctt 30266468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 185 - 287
Target Start/End: Original strand, 25616843 - 25616945
Alignment:
Q  185 tatatatagggcattttaaatgaaagcaccttttaaatgagagtgtgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgc 284  Q
    |||||||| ||||||| |||||| || || ||||||||||||| ||||||| |||||| |||||||||||||| ||||||||  ||||| ||||||||||    
T  25616843 tatatatatggcatttcaaatgagaggactttttaaatgagagggtgagagaaattaacttagaccgttggatttaaatcaaggcttcagatttaattgc 25616942  T
Q  285 tct 287  Q
    |||    
T  25616943 tct 25616945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 220 - 289
Target Start/End: Original strand, 42847959 - 42848028
Alignment:
Q  220 aatgagagtgtgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgctcttt 289  Q
    |||||||| ||||||||||||| ||| |||| |||||||||||||||| ||||| |||||||||| ||||    
T  42847959 aatgagagggtgagaggaattagtttggaccattggatctaaatcaacgcttcagatttaattgcacttt 42848028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 114 - 183
Target Start/End: Complemental strand, 45040658 - 45040589
Alignment:
Q  114 ctgcaacgtagccactactcttagttttttcactagatccttcacgatcaacttgtatttatcacccatc 183  Q
    |||||||||||||||||||||||||||||||||||| ||||| |   |||| |||||||| |||||||||    
T  45040658 ctgcaacgtagccactactcttagttttttcactaggtcctttattgtcaagttgtatttgtcacccatc 45040589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 230 - 289
Target Start/End: Complemental strand, 45632433 - 45632374
Alignment:
Q  230 tgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgctcttt 289  Q
    ||||||||||||||||| |||||||||||||||||||| ||| | |||||||||| ||||    
T  45632433 tgagaggaattaatttaaaccgttggatctaaatcaacgctttagatttaattgcacttt 45632374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 223 - 289
Target Start/End: Complemental strand, 42848674 - 42848608
Alignment:
Q  223 gagagtgtgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgctcttt 289  Q
    ||||| |||||| |||||||||| |||||||| |||||||||||| ||||| |||||||||| ||||    
T  42848674 gagagggtgagaagaattaatttggaccgttgaatctaaatcaacgcttcagatttaattgcacttt 42848608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 185 - 334
Target Start/End: Complemental strand, 23732995 - 23732837
Alignment:
Q  185 tatatatagggcattttaaatgaaagcaccttttaaatgagagtgtgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgc 284  Q
    |||||||| ||||||| |||  | ||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||     
T  23732995 tatatatatggcatttcaaaatagagcactttttaaatgagagggtgagaggaattaatttagaccgttagatctaaatcaacacttcagatttaattgt 23732896  T
Q  285 tcttt------tgtcatg---caatgtaacatccaccttttctcttctccactctcttt 334  Q
    |||||       ||||||   ||  ||||||||||||||||||||||||||||||||||    
T  23732895 tctttaaaaagggtcatgcaccaccgtaacatccaccttttctcttctccactctcttt 23732837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 289
Target Start/End: Complemental strand, 19534789 - 19534730
Alignment:
Q  230 tgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgctcttt 289  Q
    ||||||| |||||||||||| |||||||||||||||||   ||||||| || ||||||||    
T  19534789 tgagagggattaatttagactgttggatctaaatcaacggctcaaattaaaatgctcttt 19534730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 237
Target Start/End: Complemental strand, 14237438 - 14237386
Alignment:
Q  185 tatatatagggcattttaaatgaaagcaccttttaaatgagagtgtgagagga 237  Q
    |||||||| ||||||| |||| | ||||| ||||||||||||| |||||||||    
T  14237438 tatatatatggcatttcaaataagagcactttttaaatgagagggtgagagga 14237386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 266
Target Start/End: Original strand, 51097551 - 51097587
Alignment:
Q  230 tgagaggaattaatttagaccgttggatctaaatcaa 266  Q
    |||||||||||||||| ||||||||||| ||||||||    
T  51097551 tgagaggaattaatttcgaccgttggatttaaatcaa 51097587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 215 - 283
Target Start/End: Complemental strand, 44495153 - 44495085
Alignment:
Q  215 ttttaaatgagagtgtgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattg 283  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  44495153 ttttaaatgagagggtgagaggaattaatttagaccgttggatctaaatcaacgcttcaaatttaattg 44495085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 96 - 183
Target Start/End: Complemental strand, 29378278 - 29378191
Alignment:
Q  96 ttgcacatcatcacatgtctgcaacgtagccactactcttagttttttcactagatccttcacgatcaacttgtatttatcacccatc 183  Q
    |||||||||||||||||  |||||| |||||||| ||||||||||||||||||||||||||||  |||| |||||||||| |||||||    
T  29378278 ttgcacatcatcacatgcttgcaacatagccacttctcttagttttttcactagatccttcactgtcaagttgtatttattacccatc 29378191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 237
Target Start/End: Original strand, 9044179 - 9044231
Alignment:
Q  185 tatatatagggcattttaaatgaaagcaccttttaaatgagagtgtgagagga 237  Q
    ||||||||||||||||||||||| |  || ||||||||||||| |||||||||    
T  9044179 tatatatagggcattttaaatgagatgactttttaaatgagagggtgagagga 9044231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 237
Target Start/End: Original strand, 16723676 - 16723728
Alignment:
Q  185 tatatatagggcattttaaatgaaagcaccttttaaatgagagtgtgagagga 237  Q
    |||||||||||||||| |||||| || || ||| ||||||||| |||||||||    
T  16723676 tatatatagggcatttcaaatgagaggacttttaaaatgagagggtgagagga 16723728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 237
Target Start/End: Original strand, 23546138 - 23546190
Alignment:
Q  185 tatatatagggcattttaaatgaaagcaccttttaaatgagagtgtgagagga 237  Q
    |||||||||||||||| |||||| ||  | ||||||||||||| |||||||||    
T  23546138 tatatatagggcatttcaaatgagagggcattttaaatgagagggtgagagga 23546190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 237
Target Start/End: Complemental strand, 23546961 - 23546909
Alignment:
Q  185 tatatatagggcattttaaatgaaagcaccttttaaatgagagtgtgagagga 237  Q
    |||||||||||||||| |||||| ||  | ||||||||||||| |||||||||    
T  23546961 tatatatagggcatttcaaatgagagagctttttaaatgagagggtgagagga 23546909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 202 - 289
Target Start/End: Original strand, 4427880 - 4427967
Alignment:
Q  202 aaatgaaagcaccttttaaatgagagtgtgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgctcttt 289  Q
    ||||||||  || |||||||| |||| |||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||    
T  4427880 aaatgaaaagactttttaaattagagggtgagaggaattaatttagaccgttgaatctaaatcgacactttaaatttaattgctcttt 4427967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 219 - 289
Target Start/End: Original strand, 33573280 - 33573350
Alignment:
Q  219 aaatgagagtgtgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgctcttt 289  Q
    |||||||||  |||||||||||||||||||||||| |||| |||||||| | ||| ||||||||| |||||    
T  33573280 aaatgagaggctgagaggaattaatttagaccgttagatcaaaatcaacgcctcagatttaattgttcttt 33573350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 185 - 237
Target Start/End: Original strand, 14098489 - 14098541
Alignment:
Q  185 tatatatagggcattttaaatgaaagcaccttttaaatgagagtgtgagagga 237  Q
    ||||||||||||||||||||||| || || ||||||||||||| |||||||||    
T  14098489 tatatatagggcattttaaatgagaggactttttaaatgagagggtgagagga 14098541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 289
Target Start/End: Complemental strand, 14098448 - 14098379
Alignment:
Q  220 aatgagagtgtgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgctcttt 289  Q
    ||||||||  ||| |||||||||||| |||| ||||| | |||||||| ||||| |||||||||||||||    
T  14098448 aatgagaggatgacaggaattaatttggaccattggaacaaaatcaacgcttcagatttaattgctcttt 14098379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 289
Target Start/End: Original strand, 41609534 - 41609603
Alignment:
Q  220 aatgagagtgtgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgctcttt 289  Q
    ||||||||  ||||||||||||||||  ||| ||||||| |||||||| | ||| |||||||||||||||    
T  41609534 aatgagaggatgagaggaattaatttgaaccattggatcaaaatcaacgcatcagatttaattgctcttt 41609603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 289
Target Start/End: Complemental strand, 210472 - 210403
Alignment:
Q  220 aatgagagtgtgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgctcttt 289  Q
    ||||||||  ||| |||||||||| | |||| ||||||| |||||||| ||| | |||||||||||||||    
T  210472 aatgagaggatgaaaggaattaatctggaccattggatcaaaatcaacgctttagatttaattgctcttt 210403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 197 - 286
Target Start/End: Complemental strand, 5941426 - 5941337
Alignment:
Q  197 attttaaatgaaagcaccttttaaatgagagtgtgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgctc 286  Q
    ||||||||||| || || ||||||| ||||| ||||||||||||||| ||||| ||| ||||||||||||| ||||| || |||||||||    
T  5941426 attttaaatgagaggactttttaaacgagagggtgagaggaattaatatagacagttagatctaaatcaacgcttcagatataattgctc 5941337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 289
Target Start/End: Original strand, 50185305 - 50185375
Alignment:
Q  219 aaatgagagtgtgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgctcttt 289  Q
    ||||||||| ||||||||||||||||||||||||| |||| |||||||| | ||| ||||||||| |||||    
T  50185305 aaatgagagggtgagaggaattaatttagaccgttagatcaaaatcaacgcctcagatttaattgttcttt 50185375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 289
Target Start/End: Complemental strand, 49648256 - 49648187
Alignment:
Q  220 aatgagagtgtgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgctcttt 289  Q
    |||||||| ||||||||||||||||| |||| ||  |||||||||||| ||||| |||||||||| ||||    
T  49648256 aatgagagggtgagaggaattaatttggaccatttaatctaaatcaacgcttcagatttaattgcacttt 49648187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 237
Target Start/End: Original strand, 43428469 - 43428521
Alignment:
Q  185 tatatatagggcattttaaatgaaagcaccttttaaatgagagtgtgagagga 237  Q
    |||||| |||||||||||||||| || || ||||||||||||| |||||||||    
T  43428469 tatataaagggcattttaaatgagaggactttttaaatgagagggtgagagga 43428521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 289
Target Start/End: Original strand, 24844112 - 24844181
Alignment:
Q  220 aatgagagtgtgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgctcttt 289  Q
    ||||||||  |||||| ||||||| |  ||| ||||||| |||||||| ||||| |||||||||||||||    
T  24844112 aatgagagaatgagagaaattaatctgaaccattggatcaaaatcaacgcttcagatttaattgctcttt 24844181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 266
Target Start/End: Complemental strand, 11381003 - 11380967
Alignment:
Q  230 tgagaggaattaatttagaccgttggatctaaatcaa 266  Q
    |||||||||||||||| ||||||||||| ||||||||    
T  11381003 tgagaggaattaatttcgaccgttggatttaaatcaa 11380967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 237
Target Start/End: Original strand, 19638096 - 19638148
Alignment:
Q  185 tatatatagggcattttaaatgaaagcaccttttaaatgagagtgtgagagga 237  Q
    |||||||||||||||| |||||| || |  ||||||||||||| |||||||||    
T  19638096 tatatatagggcatttcaaatgagaggaatttttaaatgagagggtgagagga 19638148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 289
Target Start/End: Original strand, 51702695 - 51702763
Alignment:
Q  221 atgagagtgtgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgctcttt 289  Q
    |||||||  |||||||||||||| | || | ||||||| ||||||||  |||| |||||||||||||||    
T  51702695 atgagaggatgagaggaattaatctggatcattggatcaaaatcaacgtttcagatttaattgctcttt 51702763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 220 - 289
Target Start/End: Original strand, 46889353 - 46889422
Alignment:
Q  220 aatgagagtgtgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgctcttt 289  Q
    |||||||| ||||||||||||||||||||||||| |||| |||||||||| ||| ||||||||| |||||    
T  46889353 aatgagagggtgagaggaattaatttagaccgttagatcaaaatcaacacctcagatttaattgttcttt 46889422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 185 - 289
Target Start/End: Complemental strand, 20111958 - 20111854
Alignment:
Q  185 tatatatagggcattttaaatgaaagcaccttttaaatgagagtgtgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgc 284  Q
    |||||||| | ||||| |||| | || || ||| |||||||||  |||||||||||||||| || ||||||||||||||| || |||||||||||||| |    
T  20111958 tatatatatgacatttcaaataagaggacttttaaaatgagaggatgagaggaattaattttgatcgttggatctaaatcgacgcttcaaatttaattac 20111859  T
Q  285 tcttt 289  Q
    |||||    
T  20111858 tcttt 20111854  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 230 - 289
Target Start/End: Original strand, 1093209 - 1093268
Alignment:
Q  230 tgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgctcttt 289  Q
    ||||||||||||||||||||||||||||||||||||||  |||| || | ||||||||||    
T  1093209 tgagaggaattaatttagaccgttggatctaaatcaacgtttcagatgttattgctcttt 1093268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 289
Target Start/End: Original strand, 37915435 - 37915504
Alignment:
Q  220 aatgagagtgtgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgctcttt 289  Q
    ||||||||  |||||||||||||| |||||| ||||||| |||||||| ||||| ||||||||| |||||    
T  37915435 aatgagaggatgagaggaattaatctagaccattggatcaaaatcaacgcttcagatttaattgttcttt 37915504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 289
Target Start/End: Original strand, 49308157 - 49308226
Alignment:
Q  220 aatgagagtgtgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgctcttt 289  Q
    ||||||||  |||||||||||||||| || | ||||||| |||||||| ||||| |||||||||||||||    
T  49308157 aatgagaggatgagaggaattaatttggatcattggatcaaaatcaacgcttcagatttaattgctcttt 49308226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 289
Target Start/End: Complemental strand, 53467311 - 53467242
Alignment:
Q  220 aatgagagtgtgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgctcttt 289  Q
    ||||||||  |||||||||||||| | || | ||||||| |||||||| |||||||||||||||||||||    
T  53467311 aatgagaggatgagaggaattaatctggatcattggatcaaaatcaacgcttcaaatttaattgctcttt 53467242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 285
Target Start/End: Complemental strand, 50704366 - 50704311
Alignment:
Q  230 tgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgct 285  Q
    |||||||||||||| | |||| ||||||| |||||||| ||||| |||||||||||    
T  50704366 tgagaggaattaatctggaccattggatcaaaatcaacgcttcagatttaattgct 50704311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 267
Target Start/End: Original strand, 36863922 - 36863959
Alignment:
Q  230 tgagaggaattaatttagaccgttggatctaaatcaac 267  Q
    ||||||| |||||||||||| |||||||||||||||||    
T  36863922 tgagagggattaatttagactgttggatctaaatcaac 36863959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 237
Target Start/End: Original strand, 11617409 - 11617461
Alignment:
Q  185 tatatatagggcattttaaatgaaagcaccttttaaatgagagtgtgagagga 237  Q
    |||||||| ||||||| |||| ||||||  ||||||||||||| |||||||||    
T  11617409 tatatatatggcatttcaaataaaagcattttttaaatgagagggtgagagga 11617461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 237
Target Start/End: Complemental strand, 40934885 - 40934833
Alignment:
Q  185 tatatatagggcattttaaatgaaagcaccttttaaatgagagtgtgagagga 237  Q
    |||||||||||||||| |||| | || || ||||||||||||| |||||||||    
T  40934885 tatatatagggcatttcaaataagaggacattttaaatgagagggtgagagga 40934833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 230 - 289
Target Start/End: Original strand, 42745671 - 42745730
Alignment:
Q  230 tgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgctcttt 289  Q
    |||||||||||||||| ||||||||||||||||||||| ||||| |||||||||| ||||    
T  42745671 tgagaggaattaatttggaccgttggatctaaatcaacgcttcagatttaattgcacttt 42745730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 289
Target Start/End: Complemental strand, 42418242 - 42418172
Alignment:
Q  219 aaatgagagtgtgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgctcttt 289  Q
    ||||||||| ||||||||||||||||||||||||| |||| |||||||| | ||| ||||||||| |||||    
T  42418242 aaatgagagggtgagaggaattaatttagaccgttagatcaaaatcaacgcctcagatttaattgttcttt 42418172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 289
Target Start/End: Original strand, 9146091 - 9146160
Alignment:
Q  220 aatgagagtgtgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgctcttt 289  Q
    ||||||||  |||||||||||||||| |||  ||||||| |||||||| ||||| ||||||||| |||||    
T  9146091 aatgagaggatgagaggaattaatttggacatttggatcaaaatcaacgcttcagatttaattgttcttt 9146160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 289
Target Start/End: Complemental strand, 12294299 - 12294226
Alignment:
Q  216 tttaaatgagagtgtgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgctcttt 289  Q
    ||||||||||||  ||||| |||||||| |  ||| ||||||| |||||||| ||||| |||||||||||||||    
T  12294299 tttaaatgagaggatgagatgaattaatctgaaccattggatcaaaatcaacgcttcatatttaattgctcttt 12294226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 289
Target Start/End: Complemental strand, 32577394 - 32577325
Alignment:
Q  220 aatgagagtgtgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgctcttt 289  Q
    ||||||||  |||||||||||||| |  ||| ||||||| |||||||| ||||| |||||||||||||||    
T  32577394 aatgagaggatgagaggaattaatctgaaccattggatcaaaatcaacgcttcagatttaattgctcttt 32577325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 237
Target Start/End: Complemental strand, 43448574 - 43448522
Alignment:
Q  185 tatatatagggcattttaaatgaaagcaccttttaaatgagagtgtgagagga 237  Q
    |||||||||| ||||| |||||| || |||||||||||||||| |||||||||    
T  43448574 tatatataggacatttcaaatgagaggaccttttaaatgagagggtgagagga 43448522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 267
Target Start/End: Complemental strand, 31077769 - 31077732
Alignment:
Q  230 tgagaggaattaatttagaccgttggatctaaatcaac 267  Q
    |||||||||||||||||||||||| |||| ||||||||    
T  31077769 tgagaggaattaatttagaccgttagatcaaaatcaac 31077732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 289
Target Start/End: Original strand, 12293490 - 12293562
Alignment:
Q  217 ttaaatgagagtgtgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgctcttt 289  Q
    |||||||||||  |||||| ||||||| | || | ||||||| |||||||| ||||| ||||||||| |||||    
T  12293490 ttaaatgagaggatgagagaaattaatctggatcattggatcaaaatcaacgcttcagatttaattggtcttt 12293562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 237
Target Start/End: Original strand, 19068458 - 19068510
Alignment:
Q  185 tatatatagggcattttaaatgaaagcaccttttaaatgagagtgtgagagga 237  Q
    |||||| ||||||||| |||||| || || ||||||||||||| |||||||||    
T  19068458 tatatagagggcatttcaaatgagaggactttttaaatgagagggtgagagga 19068510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 192 - 289
Target Start/End: Complemental strand, 18970703 - 18970606
Alignment:
Q  192 agggcattttaaatgaaagcaccttttaaatgagagtgtgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaattgctcttt 289  Q
    ||||||||| |||| | || || ||| |||||||||  |||||||||||||||| || ||||||||||||||| || |||||||||||| | ||||||    
T  18970703 agggcatttcaaataagaggacttttaaaatgagaggatgagaggaattaattttgatcgttggatctaaatcgacgcttcaaatttaactactcttt 18970606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 237
Target Start/End: Original strand, 20508604 - 20508656
Alignment:
Q  185 tatatatagggcattttaaatgaaagcaccttttaaatgagagtgtgagagga 237  Q
    |||||||||||||||| |||||| |  || ||||||||||||| |||||||||    
T  20508604 tatatatagggcatttcaaatgagatgactttttaaatgagagggtgagagga 20508656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1370 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1370
Description:

Target: scaffold1370; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 195 - 253
Alignment:
Q  185 tatatatagggcattttaaatgaaagcaccttttaaatgagagtgtgagaggaattaat 243  Q
    |||||||||||||||| |||||| || || |||||||||||||  |||||||| |||||    
T  195 tatatatagggcatttcaaatgagaggactttttaaatgagaggatgagaggagttaat 253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 282
Target Start/End: Complemental strand, 23751 - 23689
Alignment:
Q  220 aatgagagtgtgagaggaattaatttagaccgttggatctaaatcaacacttcaaatttaatt 282  Q
    ||||||||  |||||||||||||| |||| | ||||||| |||||||| ||||| ||||||||    
T  23751 aatgagaggatgagaggaattaatatagatcattggatcaaaatcaacgcttcagatttaatt 23689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 237
Target Start/End: Original strand, 28147 - 28199
Alignment:
Q  185 tatatatagggcattttaaatgaaagcaccttttaaatgagagtgtgagagga 237  Q
    |||||||||||||||| |||| | || || ||||||||||||| |||||||||    
T  28147 tatatatagggcatttcaaataagaggactttttaaatgagagggtgagagga 28199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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