View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8516_high_16 (Length: 285)
Name: NF8516_high_16
Description: NF8516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8516_high_16 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 17 - 285
Target Start/End: Complemental strand, 44371080 - 44370812
Alignment:
| Q |
17 |
accgacaaaagacaaacaaatgaaaccgaattaggcttaacacaagagtttctcatttcctgaaaagttcctaatgctgagttaaaatccccatttttca |
116 |
Q |
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|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44371080 |
accgacaaaagacaaacaaacgaaacagaattaggcttaacacaagagtttctcatttcctgaaaagttcctaatgctgagttaaaatccccatttttca |
44370981 |
T |
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| Q |
117 |
cataaccattaagcatgacattccacaaaatgcagtctctcacaggcaattcatcgaacagatatttagcatcatgaatataaccattatccgtatacaa |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44370980 |
cataaccattaagcatgacattccacaaaatgcagtctctcacaggcaattcatcaaacagatatttagcatcatgaatataaccattatccgtatacaa |
44370881 |
T |
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| Q |
217 |
cttaatcaaagaactaccaataaacaaatccatatgaaatcccatagaccgcgccaattcatgaaccat |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
44370880 |
cttaatcaaagaactaccaataaacaaatccatatgaaatcccatagaccgggccaattcatgaaccat |
44370812 |
T |
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